FBXO42 (F-box protein 42) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: FBXO42 (F-box protein 42) Canis lupus familiaris
Analyze
Symbol: FBXO42
Name: F-box protein 42
RGD ID: 12358553
Description: ENCODES a protein that exhibits ubiquitin-like ligase-substrate adaptor activity (inferred); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); genetic disease (ortholog); FOUND IN SCF ubiquitin ligase complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: F-box only protein 42
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1281,358,204 - 81,460,603 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl281,358,212 - 81,456,916 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha277,894,110 - 77,996,832 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0282,003,981 - 82,105,114 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl282,003,974 - 82,106,745 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1278,756,902 - 78,858,094 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0279,773,947 - 79,876,973 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0280,842,557 - 80,943,172 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
FBXO42
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1281,358,204 - 81,460,603 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl281,358,212 - 81,456,916 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha277,894,110 - 77,996,832 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0282,003,981 - 82,105,114 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl282,003,974 - 82,106,745 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1278,756,902 - 78,858,094 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0279,773,947 - 79,876,973 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0280,842,557 - 80,943,172 (+)NCBIUU_Cfam_GSD_1.0
FBXO42
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38116,246,840 - 16,352,480 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl116,246,840 - 16,352,480 (-)EnsemblGRCh38hg38GRCh38
GRCh37116,573,335 - 16,678,975 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36116,449,146 - 16,551,535 (-)NCBINCBI36Build 36hg18NCBI36
Build 34116,321,865 - 16,424,254NCBI
Celera115,056,452 - 15,158,874 (-)NCBICelera
Cytogenetic Map1p36.13NCBI
HuRef115,093,755 - 15,196,329 (-)NCBIHuRef
CHM1_1116,375,153 - 16,477,623 (-)NCBICHM1_1
T2T-CHM13v2.0115,688,176 - 15,793,999 (-)NCBIT2T-CHM13v2.0
Fbxo42
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394140,875,216 - 140,931,373 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4140,875,224 - 140,931,373 (+)EnsemblGRCm39 Ensembl
GRCm384141,147,922 - 141,204,062 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4141,147,913 - 141,204,062 (+)EnsemblGRCm38mm10GRCm38
MGSCv374140,703,837 - 140,759,977 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364140,420,007 - 140,476,138 (+)NCBIMGSCv36mm8
Celera4142,955,099 - 143,012,796 (+)NCBICelera
Cytogenetic Map4D3NCBI
cM Map473.41NCBI
Fbxo42
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85158,734,165 - 158,792,560 (+)NCBIGRCr8
mRatBN7.25153,451,162 - 153,509,564 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5153,451,153 - 153,506,342 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5156,139,864 - 156,198,142 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05157,913,137 - 157,971,419 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05157,902,324 - 157,960,606 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05159,670,662 - 159,729,070 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5159,670,662 - 159,729,064 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05163,382,899 - 163,444,733 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45160,005,496 - 160,061,687 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15160,015,781 - 160,072,342 (+)NCBI
Celera5151,815,504 - 151,870,636 (+)NCBICelera
Cytogenetic Map5q36NCBI
Fbxo42
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555271,967,232 - 2,049,524 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555271,967,232 - 2,049,524 (+)NCBIChiLan1.0ChiLan1.0
FBXO42
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21210,568,617 - 210,674,961 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11209,817,242 - 209,923,531 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0115,383,505 - 15,489,800 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1116,375,319 - 16,481,012 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl116,375,319 - 16,481,012 (-)Ensemblpanpan1.1panPan2
Fbxo42
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505837,913,546 - 37,994,035 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364743,738,234 - 3,818,842 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364743,738,332 - 3,818,796 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FBXO42
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl675,364,450 - 75,446,085 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1675,365,130 - 75,446,121 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2669,680,295 - 69,761,252 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FBXO42
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120115,971,342 - 116,056,150 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20115,971,369 - 116,059,285 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605419,454,277 - 19,554,377 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fbxo42
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247642,368,251 - 2,466,298 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247642,368,251 - 2,465,867 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FBXO42
1097 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 8 3 5 3 7
Low 5 5 14 6 3 6 1 6 9 8 3 6
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005617959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022414239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022414240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022414243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022414246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038470985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038470986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038470987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038470988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038470989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038470990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038529598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038596118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038596119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038596121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038596122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038596123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038596124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038660205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038660206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038660207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038660208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038660209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038660210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_846933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000049392   ⟹   ENSCAFP00000043198
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl281,358,212 - 81,456,916 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000084121   ⟹   ENSCAFP00000056450
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl281,407,540 - 81,456,916 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000088387   ⟹   ENSCAFP00000047169
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl281,358,212 - 81,456,916 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845008513   ⟹   ENSCAFP00845006717
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl282,003,974 - 82,106,745 (+)Ensembl
RefSeq Acc Id: XM_005617959   ⟹   XP_005618016
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1281,421,909 - 81,460,603 (+)NCBI
Dog10K_Boxer_Tasha277,957,629 - 77,996,832 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022414239   ⟹   XP_022269947
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1281,358,849 - 81,460,603 (+)NCBI
Dog10K_Boxer_Tasha277,894,762 - 77,996,832 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022414240   ⟹   XP_022269948
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1281,358,204 - 81,460,603 (+)NCBI
Dog10K_Boxer_Tasha277,894,110 - 77,996,832 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022414243   ⟹   XP_022269951
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1281,406,782 - 81,460,603 (+)NCBI
Dog10K_Boxer_Tasha277,942,701 - 77,996,832 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022414246   ⟹   XP_022269954
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1281,358,854 - 81,460,603 (+)NCBI
Dog10K_Boxer_Tasha277,894,766 - 77,996,832 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038470985   ⟹   XP_038326913
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1278,757,554 - 78,858,094 (+)NCBI
RefSeq Acc Id: XM_038470986   ⟹   XP_038326914
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1278,756,902 - 78,858,094 (+)NCBI
RefSeq Acc Id: XM_038470987   ⟹   XP_038326915
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1278,805,647 - 78,858,094 (+)NCBI
RefSeq Acc Id: XM_038470988   ⟹   XP_038326916
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1278,757,558 - 78,858,094 (+)NCBI
RefSeq Acc Id: XM_038470989   ⟹   XP_038326917
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1278,756,903 - 78,858,094 (+)NCBI
RefSeq Acc Id: XM_038470990   ⟹   XP_038326918
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1278,820,550 - 78,858,094 (+)NCBI
RefSeq Acc Id: XM_038529598   ⟹   XP_038385526
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0280,842,557 - 80,943,172 (+)NCBI
RefSeq Acc Id: XM_038596118   ⟹   XP_038452046
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0279,774,599 - 79,876,973 (+)NCBI
RefSeq Acc Id: XM_038596119   ⟹   XP_038452047
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0279,773,947 - 79,876,973 (+)NCBI
RefSeq Acc Id: XM_038596121   ⟹   XP_038452049
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0279,822,875 - 79,876,973 (+)NCBI
RefSeq Acc Id: XM_038596122   ⟹   XP_038452050
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0279,774,603 - 79,876,973 (+)NCBI
RefSeq Acc Id: XM_038596123   ⟹   XP_038452051
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0279,773,948 - 79,876,973 (+)NCBI
RefSeq Acc Id: XM_038596124   ⟹   XP_038452052
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0279,837,778 - 79,876,973 (+)NCBI
RefSeq Acc Id: XM_038660205   ⟹   XP_038516133
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0282,004,633 - 82,105,114 (+)NCBI
RefSeq Acc Id: XM_038660206   ⟹   XP_038516134
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0282,003,981 - 82,105,114 (+)NCBI
RefSeq Acc Id: XM_038660207   ⟹   XP_038516135
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0282,052,598 - 82,105,114 (+)NCBI
RefSeq Acc Id: XM_038660208   ⟹   XP_038516136
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0282,004,638 - 82,105,114 (+)NCBI
RefSeq Acc Id: XM_038660209   ⟹   XP_038516137
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0282,003,982 - 82,105,114 (+)NCBI
RefSeq Acc Id: XM_038660210   ⟹   XP_038516138
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0282,067,515 - 82,105,114 (+)NCBI
RefSeq Acc Id: XM_846933   ⟹   XP_852026
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1281,358,205 - 81,460,603 (+)NCBI
Dog10K_Boxer_Tasha277,894,111 - 77,996,832 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005618016 (Get FASTA)   NCBI Sequence Viewer  
  XP_022269947 (Get FASTA)   NCBI Sequence Viewer  
  XP_022269948 (Get FASTA)   NCBI Sequence Viewer  
  XP_022269951 (Get FASTA)   NCBI Sequence Viewer  
  XP_022269954 (Get FASTA)   NCBI Sequence Viewer  
  XP_038326913 (Get FASTA)   NCBI Sequence Viewer  
  XP_038326914 (Get FASTA)   NCBI Sequence Viewer  
  XP_038326915 (Get FASTA)   NCBI Sequence Viewer  
  XP_038326916 (Get FASTA)   NCBI Sequence Viewer  
  XP_038326917 (Get FASTA)   NCBI Sequence Viewer  
  XP_038326918 (Get FASTA)   NCBI Sequence Viewer  
  XP_038385526 (Get FASTA)   NCBI Sequence Viewer  
  XP_038452046 (Get FASTA)   NCBI Sequence Viewer  
  XP_038452047 (Get FASTA)   NCBI Sequence Viewer  
  XP_038452049 (Get FASTA)   NCBI Sequence Viewer  
  XP_038452050 (Get FASTA)   NCBI Sequence Viewer  
  XP_038452051 (Get FASTA)   NCBI Sequence Viewer  
  XP_038452052 (Get FASTA)   NCBI Sequence Viewer  
  XP_038516133 (Get FASTA)   NCBI Sequence Viewer  
  XP_038516134 (Get FASTA)   NCBI Sequence Viewer  
  XP_038516135 (Get FASTA)   NCBI Sequence Viewer  
  XP_038516136 (Get FASTA)   NCBI Sequence Viewer  
  XP_038516137 (Get FASTA)   NCBI Sequence Viewer  
  XP_038516138 (Get FASTA)   NCBI Sequence Viewer  
  XP_852026 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000043198.1
  ENSCAFP00030018158.1
  ENSCAFP00040004758.1
  ENSCAFP00040004774.1
  ENSCAFP00845006717
  ENSCAFP00845006717.1
Reference Protein Sequences
RefSeq Acc Id: XP_852026   ⟸   XM_846933
- Peptide Label: isoform X4
- UniProtKB: A0A8I3MRA1 (UniProtKB/TrEMBL),   A0A8P0SWG8 (UniProtKB/TrEMBL),   A0A8C0N6H5 (UniProtKB/TrEMBL),   A0A8C0Q7Y1 (UniProtKB/TrEMBL),   A0A8C0QVL9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005618016   ⟸   XM_005617959
- Peptide Label: isoform X5
- UniProtKB: A0A8C0PVG1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022269948   ⟸   XM_022414240
- Peptide Label: isoform X2
- UniProtKB: A0A8C0N6H5 (UniProtKB/TrEMBL),   A0A8C0Q7Y1 (UniProtKB/TrEMBL),   A0A8C0QVL9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022269947   ⟸   XM_022414239
- Peptide Label: isoform X1
- UniProtKB: A0A8C0N6H5 (UniProtKB/TrEMBL),   A0A8C0Q7Y1 (UniProtKB/TrEMBL),   A0A8C0QVL9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022269954   ⟸   XM_022414246
- Peptide Label: isoform X3
- UniProtKB: A0A8C0N6H5 (UniProtKB/TrEMBL),   A0A8C0Q7Y1 (UniProtKB/TrEMBL),   A0A8C0QVL9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022269951   ⟸   XM_022414243
- Peptide Label: isoform X2
- UniProtKB: A0A8C0N6H5 (UniProtKB/TrEMBL),   A0A8C0Q7Y1 (UniProtKB/TrEMBL),   A0A8C0QVL9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000047169   ⟸   ENSCAFT00000088387
RefSeq Acc Id: ENSCAFP00000043198   ⟸   ENSCAFT00000049392
RefSeq Acc Id: ENSCAFP00000056450   ⟸   ENSCAFT00000084121
RefSeq Acc Id: XP_038326914   ⟸   XM_038470986
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038326917   ⟸   XM_038470989
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038326913   ⟸   XM_038470985
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038326916   ⟸   XM_038470988
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038326915   ⟸   XM_038470987
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038326918   ⟸   XM_038470990
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038452047   ⟸   XM_038596119
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038452051   ⟸   XM_038596123
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038452046   ⟸   XM_038596118
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038452050   ⟸   XM_038596122
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038452049   ⟸   XM_038596121
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038452052   ⟸   XM_038596124
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038516134   ⟸   XM_038660206
- Peptide Label: isoform X2
- UniProtKB: A0A8C0N6H5 (UniProtKB/TrEMBL),   A0A8C0Q7Y1 (UniProtKB/TrEMBL),   A0A8C0QVL9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038516137   ⟸   XM_038660209
- Peptide Label: isoform X4
- UniProtKB: A0A8I3MRA1 (UniProtKB/TrEMBL),   A0A8P0SWG8 (UniProtKB/TrEMBL),   A0A8C0N6H5 (UniProtKB/TrEMBL),   A0A8C0Q7Y1 (UniProtKB/TrEMBL),   A0A8C0QVL9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038516133   ⟸   XM_038660205
- Peptide Label: isoform X1
- UniProtKB: A0A8C0N6H5 (UniProtKB/TrEMBL),   A0A8C0Q7Y1 (UniProtKB/TrEMBL),   A0A8C0QVL9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038516136   ⟸   XM_038660208
- Peptide Label: isoform X3
- UniProtKB: A0A8C0N6H5 (UniProtKB/TrEMBL),   A0A8C0Q7Y1 (UniProtKB/TrEMBL),   A0A8C0QVL9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038516135   ⟸   XM_038660207
- Peptide Label: isoform X2
- UniProtKB: A0A8C0N6H5 (UniProtKB/TrEMBL),   A0A8C0Q7Y1 (UniProtKB/TrEMBL),   A0A8C0QVL9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038516138   ⟸   XM_038660210
- Peptide Label: isoform X5
- UniProtKB: A0A8C0PVG1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038385526   ⟸   XM_038529598
- Peptide Label: isoform X6
- UniProtKB: A0A8C0Q7Y1 (UniProtKB/TrEMBL),   A0A8C0QVL9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845006717   ⟸   ENSCAFT00845008513
Protein Domains
F-box

Promoters
RGD ID:13682642
Promoter ID:EPDNEW_C710
Type:multiple initiation site
Name:FBXO42_1
Description:F-box protein 42
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1281,358,200 - 81,358,260EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000031747 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030011243 UniProtKB/TrEMBL
  ENSCAFG00040002910 UniProtKB/TrEMBL
  ENSCAFG00845004752 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000049392.3 UniProtKB/TrEMBL
  ENSCAFT00030020815.1 UniProtKB/TrEMBL
  ENSCAFT00040005534.1 UniProtKB/TrEMBL
  ENSCAFT00040005550.1 UniProtKB/TrEMBL
  ENSCAFT00845008513 ENTREZGENE
  ENSCAFT00845008513.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1280.50 UniProtKB/TrEMBL
  2.120.10.80 UniProtKB/TrEMBL
InterPro F-box-like_dom_sf UniProtKB/TrEMBL
  F-box_dom UniProtKB/TrEMBL
  Kelch-typ_b-propeller UniProtKB/TrEMBL
NCBI Gene FBXO42 ENTREZGENE
PANTHER F-BOX ONLY PROTEIN 42 UniProtKB/TrEMBL
  F-BOX ONLY PROTEIN 42 UniProtKB/TrEMBL
Pfam F-box-like UniProtKB/TrEMBL
  Kelch_3 UniProtKB/TrEMBL
  Kelch_5 UniProtKB/TrEMBL
PROSITE FBOX UniProtKB/TrEMBL
SMART FBOX UniProtKB/TrEMBL
Superfamily-SCOP SSF117281 UniProtKB/TrEMBL
  SSF81383 UniProtKB/TrEMBL
UniProt A0A8C0N6H5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0PVG1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0Q7Y1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0QVL9 ENTREZGENE
  A0A8I3MRA1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SWG8 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:40782 ENTREZGENE