ZNF513 (zinc finger protein 513) - Rat Genome Database

Name: ZNF513
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: ZNF513 (zinc finger protein 513) Canis lupus familiaris

Analyze

Symbol:

ZNF513

Name:

zinc finger protein 513

RGD ID:

12356428

Description:

ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); metal ion binding (inferred); INVOLVED IN positive regulation of transcription by RNA polymerase II (inferred); regulation of DNA-templated transcription (inferred); regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH fundus dystrophy (ortholog); genetic disease (ortholog); retinitis pigmentosa (ortholog); FOUND IN nucleus (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZNF513 (zinc finger protein 513)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Treefam
Mus musculus (house mouse):	Zfp513 (zinc finger protein 513)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Zfp513 (zinc finger protein 513)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Znf513 (zinc finger protein 513)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZNF513 (zinc finger protein 513)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Znf513 (zinc finger protein 513)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZNF513 (zinc finger protein 513)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZNF513 (zinc finger protein 513)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Znf513 (zinc finger protein 513)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	21,332,279 - 21,335,954 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	21,332,621 - 21,335,577 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	21,224,038 - 21,227,715 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	21,653,595 - 21,657,272 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	21,653,595 - 21,656,893 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	21,340,257 - 21,343,934 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	21,349,961 - 21,353,638 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	21,397,970 - 21,401,648 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

fundus dystrophy (ISO)

genetic disease (ISO)

retinitis pigmentosa (ISO)

retinitis pigmentosa 58 (ISO)

Tatton-Brown-Rahman syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of transcription by RNA polymerase II (IEA)

regulation of DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IEA)

retina development in camera-type eye (IEA)

Cellular Component

nucleus (IEA)

Molecular Function

DNA binding (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IEA)

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IEA)

transcription cis-regulatory region binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

ZNF513
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	21,332,279 - 21,335,954 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	21,332,621 - 21,335,577 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	21,224,038 - 21,227,715 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	21,653,595 - 21,657,272 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	21,653,595 - 21,656,893 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	21,340,257 - 21,343,934 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	21,349,961 - 21,353,638 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	21,397,970 - 21,401,648 (-)	NCBI		UU_Cfam_GSD_1.0

ZNF513
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	27,377,235 - 27,380,734 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	27,377,235 - 27,380,790 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	27,600,102 - 27,603,601 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	27,453,606 - 27,457,097 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	27,511,754 - 27,515,244	NCBI
Celera	2	27,446,768 - 27,450,259 (-)	NCBI		Celera
Cytogenetic Map	2	p23.3	NCBI
HuRef	2	27,342,101 - 27,345,614 (-)	NCBI		HuRef
CHM1_1	2	27,530,046 - 27,533,559 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	27,419,630 - 27,423,129 (-)	NCBI		T2T-CHM13v2.0

Zfp513
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	31,356,325 - 31,360,007 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	31,356,325 - 31,359,647 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	31,198,981 - 31,202,663 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	31,198,981 - 31,202,303 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	31,501,354 - 31,504,676 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	31,475,562 - 31,478,814 (-)	NCBI		MGSCv36	mm8
Celera	5	28,678,030 - 28,681,352 (-)	NCBI		Celera
Cytogenetic Map	5	B1	NCBI
cM Map	5	17.27	NCBI

Zfp513
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	30,894,153 - 30,897,414 (+)	NCBI		GRCr8
mRatBN7.2	6	25,174,181 - 25,177,442 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	25,174,178 - 25,177,439 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	25,475,018 - 25,478,279 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	25,790,911 - 25,794,172 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	25,270,043 - 25,273,304 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	26,537,707 - 26,541,051 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	26,537,707 - 26,541,048 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	36,355,970 - 36,359,314 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	25,150,226 - 25,153,500 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	25,153,178 - 25,156,453 (+)	NCBI
Celera	6	24,665,482 - 24,668,746 (+)	NCBI		Celera
Cytogenetic Map	6	q14	NCBI

Znf513
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955469	9,340,878 - 9,344,593 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955469	9,340,872 - 9,344,593 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZNF513
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	99,129,762 - 99,133,414 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	99,133,882 - 99,137,386 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	27,381,102 - 27,384,980 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	27,469,512 - 27,473,068 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	27,469,512 - 27,473,068 (-)	Ensembl	panpan1.1		panPan2

Znf513
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	65,632,534 - 65,636,398 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936493	5,204,020 - 5,207,025 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936493	5,203,926 - 5,207,031 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNF513
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	111,771,239 - 111,774,925 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	111,771,406 - 111,774,928 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	118,698,748 - 118,702,967 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZNF513
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	80,230,849 - 80,234,354 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	80,231,062 - 80,234,046 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	31,917,872 - 31,921,425 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Znf513
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624738	9,450,789 - 9,454,479 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624738	9,450,789 - 9,454,476 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in ZNF513
27 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium	4		16		6		6		12	8	10	4
Low	1	5	6	6		6		6				2
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005630262	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022404575	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038498545	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038498546	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038498547	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038561098	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038561099	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038561100	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038625149	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038625150	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038625151	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038691054	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038691055	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038691056	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_540127	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000196	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000359	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000007894 ⟹ ENSCAFP00000007318

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	17	21,332,621 - 21,335,577 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000059872 ⟹ ENSCAFP00000058331

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	17	21,332,621 - 21,335,480 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845013472 ⟹ ENSCAFP00845010451

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	17	21,653,595 - 21,656,893 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845013487 ⟹ ENSCAFP00845010464

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	17	21,653,595 - 21,656,785 (-)	Ensembl

RefSeq Acc Id:

XM_005630262 ⟹ XP_005630319

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	17	21,332,279 - 21,335,677 (-)	NCBI
Dog10K_Boxer_Tasha	17	21,224,038 - 21,227,443 (-)	NCBI

Sequence:

show sequence

CCGCGGGCCCTGAGAAGAAGGGCGGGCGGGCAGGCCGGATTGGGAGGGGCGGGGCCGGGCGGCC
ACAGGCCGGAGGCGCGTCGGGCTGGAGCCGGTCACGATGCCCCGAAGGAAGCAGAGCCACCCGC
AGCCCGTGAAATGCGAGGGGGTCAAAGTGGATACCGAAGACTCCCTCGATGAAGGACCCGGGGC
CCTGGTATTGGAGAGTGATTTGCTACTAGGCCAGGATCTGGAGTTTGAGGAGGAAGAGGAAGAG
GAAGAGGAGGAAGGTGACGGCAACAGCGACCAGCTCATGGGCTTCGAGAGAGACTCTGAAGGAG
ACTCTCTGGGGGCCAGGCCTGGGCTTCCCTACGGGCTGAGTGATGACGAGTCTGGGGGCGGCCG
GCCGCTAAGTGCCGAGAGTGAAGTTGAGGAACCAGCCAGGGGTCCAGGGGAGGCCAGGGGTGAG
AGGCCAGGCCCAGCCTGCCAGCTGTGTGGGGGGCCGACAGGTGAGGGGCCGTGTTGTGGGGCAG
GAGGGCCGGGTGGGGGGCCCCCGCTGCCCCCACGGCTACTATACTCATGCCGCCTCTGCGCCTT
CGTGTCCCACTACTCGAGCCACCTGAAGCGGCACATGCAGACACACAGCGGGGAGAAGCCGTTC
CGCTGTGGCCGCTGCCCCTACGCCTCAGCCCAGCTCGTCAACCTGACGCGACATACCCGCACCC
ACACTGGCGAGAAGCCCTACCGCTGTCCCCACTGCCCCTTTGCCTGCAGCAGCCTGGGCAACCT
GAGGCGGCATCAGCGCACCCACGCGGGGCCCCCCACTCCTCCCTGCCCGACCTGTGGCTTCCGC
TGCTGTGCTCCACGTCCCACCCGGCCTCCCAGTCCCACAGAGCAGGAGGGGGCAGTGCCCCGGC
GACCTGAAGATGCTCTGCTGCTTCCAGATTTGAGCCTCCATGTGCCACCAGGTGGTGCCAGTTT
CCTGCCGGACTGTGGGCAGCTGCGGGGTGAAGGGGAGGGCCTCTGTGGGACTGGATCAGAACCA
CTGCCAGAGCTGCTGTTCCCTTGGACCTGCCGGAACTGTGGACAAGAGCTGGAGGAGGGGGAGG
GTAGTCGGCTGGGAGCTGCCATGTGTGGGCGCTGCATGCGAGGAGAGGCCGGAGGGGGTGCCAG
CGGGGGACCCCAGGGCCCCAGTGACAAAGGCTTCGCCTGTAGCCTCTGCCCCTTTGCCACCCAC
TATCCCAACCACCTGGCTCGGCATATGAAGACGCACAGTGGCGAGAAGCCTTTCCGCTGTGCTC
GCTGTCCCTATGCCTCTGCTCATCTGGATAACCTGAAACGGCACCAGCGTGTCCACACAGGAGA
GAAGCCCTACAAGTGCCCCCTCTGCCCCTATGCCTGTGGCAACCTGGCCAACCTCAAGCGTCAT
GGTCGTATCCACTCTGGGGACAAACCTTTTCGGTGTAGCCTTTGCAACTACAGCTGCAATCAGA
GCATGAACCTCAAACGCCACATGCTGCGGCACACAGGCGAGAAGCCCTTCCGCTGTGCCACCTG
CGCCTACACCACAGGCCACTGGGACAACTACAAACGCCACCAGAAGATGGACCAGAAGTCACCT
TCTACTTCCTCCCCCGCTGGCCAGGGGCTCCACAGACTACCCTAGGCACTATATGGACCAGCCC
AAACCCCATGGGCAAGGGGCCCATATGGACCAGGGGCCTTACTTGACTGATGCACTTAATGAGC
TCAGTGAGAAGGGCCCTGTATTCACCTCCACTGCTCCCAGGGGCAGCAGAGGAACTGGCTGGGG
GACTGCCCAGCCTCCCACCTGTTTATTTAACTTATTTCAGTGCTTTATAATAAAGGAAACACTA
ACAAA

hide sequence

RefSeq Acc Id:

XM_022404575 ⟹ XP_022260283

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	17	21,332,279 - 21,335,954 (-)	NCBI
Dog10K_Boxer_Tasha	17	21,224,038 - 21,227,715 (-)	NCBI

Sequence:

show sequence

TCTCATTTCTGATTGGCTCGCCTGCTTCTTTTCGTCACAATCACTTCCTGGTCACGCAGTGGAC
GTCTTCGCCGCTTCTGCTTTCCACGGACTACATGTCCCGTGTGGCTTTGCGGAAGCGGAAGCGG
AAGCGAGGACGGAGTGGATACCGAAGACTCCCTCGATGAAGGACCCGGGGCCCTGGTATTGGAG
AGTGATTTGCTACTAGGCCAGGATCTGGAGTTTGAGGAGGAAGAGGAAGAGGAAGAGGAGGAAG
GTGACGGCAACAGCGACCAGCTCATGGGCTTCGAGAGAGACTCTGAAGGAGACTCTCTGGGGGC
CAGGCCTGGGCTTCCCTACGGGCTGAGTGATGACGAGTCTGGGGGCGGCCGGCCGCTAAGTGCC
GAGAGTGAAGTTGAGGAACCAGCCAGGGGTCCAGGGGAGGCCAGGGGTGAGAGGCCAGGCCCAG
CCTGCCAGCTGTGTGGGGGGCCGACAGGTGAGGGGCCGTGTTGTGGGGCAGGAGGGCCGGGTGG
GGGGCCCCCGCTGCCCCCACGGCTACTATACTCATGCCGCCTCTGCGCCTTCGTGTCCCACTAC
TCGAGCCACCTGAAGCGGCACATGCAGACACACAGCGGGGAGAAGCCGTTCCGCTGTGGCCGCT
GCCCCTACGCCTCAGCCCAGCTCGTCAACCTGACGCGACATACCCGCACCCACACTGGCGAGAA
GCCCTACCGCTGTCCCCACTGCCCCTTTGCCTGCAGCAGCCTGGGCAACCTGAGGCGGCATCAG
CGCACCCACGCGGGGCCCCCCACTCCTCCCTGCCCGACCTGTGGCTTCCGCTGCTGTGCTCCAC
GTCCCACCCGGCCTCCCAGTCCCACAGAGCAGGAGGGGGCAGTGCCCCGGCGACCTGAAGATGC
TCTGCTGCTTCCAGATTTGAGCCTCCATGTGCCACCAGGTGGTGCCAGTTTCCTGCCGGACTGT
GGGCAGCTGCGGGGTGAAGGGGAGGGCCTCTGTGGGACTGGATCAGAACCACTGCCAGAGCTGC
TGTTCCCTTGGACCTGCCGGAACTGTGGACAAGAGCTGGAGGAGGGGGAGGGTAGTCGGCTGGG
AGCTGCCATGTGTGGGCGCTGCATGCGAGGAGAGGCCGGAGGGGGTGCCAGCGGGGGACCCCAG
GGCCCCAGTGACAAAGGCTTCGCCTGTAGCCTCTGCCCCTTTGCCACCCACTATCCCAACCACC
TGGCTCGGCATATGAAGACGCACAGTGGCGAGAAGCCTTTCCGCTGTGCTCGCTGTCCCTATGC
CTCTGCTCATCTGGATAACCTGAAACGGCACCAGCGTGTCCACACAGGAGAGAAGCCCTACAAG
TGCCCCCTCTGCCCCTATGCCTGTGGCAACCTGGCCAACCTCAAGCGTCATGGTCGTATCCACT
CTGGGGACAAACCTTTTCGGTGTAGCCTTTGCAACTACAGCTGCAATCAGAGCATGAACCTCAA
ACGCCACATGCTGCGGCACACAGGCGAGAAGCCCTTCCGCTGTGCCACCTGCGCCTACACCACA
GGCCACTGGGACAACTACAAACGCCACCAGAAGGTGCATGGCCATGGTGGGGCAGGAGGGCCTG
GCCTCTCTGCCTCTGAGGGTTGGGCCCCGCCTCATAGCCCCTCCTCTGTGTTGAGCTCTCGGGG
TCCCACACCCCTGAGCACTGCAGGTAGCCGGGCTCTCCATACAGACTCACCCTGAACTAGGTTG
TTCTCCCTCAGGGCCCTGTGGATTAGCCCTGACTCTCCTGTACGTTTTATACAGATGGACCAGA
AGTCACCTTCTACTTCCTCCCCCGCTGGCCAGGGGCTCCACAGACTACCCTAGGCACTATATGG
ACCAGCCCAAACCCCATGGGCAAGGGGCCCATATGGACCAGGGGCCTTACTTGACTGATGCACT
TAATGAGCTCAGTGAGAAGGGCCCTGTATTCACCTCCACTGCTCCCAGGGGCAGCAGAGGAACT
GGCTGGGGGACTGCCCAGCCTCCCACCTGTTTATTTAACTTATTTCAGTGCTTTATAATAAAGG
AAACACTAACAAA

hide sequence

RefSeq Acc Id:

XM_038498545 ⟹ XP_038354473

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	17	21,340,257 - 21,343,662 (-)	NCBI

RefSeq Acc Id:

XM_038498546 ⟹ XP_038354474

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	17	21,340,257 - 21,343,662 (-)	NCBI

RefSeq Acc Id:

XM_038498547 ⟹ XP_038354475

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	17	21,340,257 - 21,343,934 (-)	NCBI

RefSeq Acc Id:

XM_038561098 ⟹ XP_038417026

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	17	21,397,970 - 21,401,376 (-)	NCBI

RefSeq Acc Id:

XM_038561099 ⟹ XP_038417027

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	17	21,397,970 - 21,401,376 (-)	NCBI

RefSeq Acc Id:

XM_038561100 ⟹ XP_038417028

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	17	21,397,970 - 21,401,648 (-)	NCBI

RefSeq Acc Id:

XM_038625149 ⟹ XP_038481077

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	17	21,349,961 - 21,353,366 (-)	NCBI

RefSeq Acc Id:

XM_038625150 ⟹ XP_038481078

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	17	21,349,961 - 21,353,366 (-)	NCBI

RefSeq Acc Id:

XM_038625151 ⟹ XP_038481079

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	17	21,349,961 - 21,353,638 (-)	NCBI

RefSeq Acc Id:

XM_038691054 ⟹ XP_038546982

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	17	21,653,595 - 21,657,000 (-)	NCBI

RefSeq Acc Id:

XM_038691055 ⟹ XP_038546983

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	17	21,653,595 - 21,657,000 (-)	NCBI

RefSeq Acc Id:

XM_038691056 ⟹ XP_038546984

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	17	21,653,595 - 21,657,272 (-)	NCBI

RefSeq Acc Id:

XM_540127 ⟹ XP_540127

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	17	21,332,279 - 21,335,677 (-)	NCBI
Dog10K_Boxer_Tasha	17	21,224,038 - 21,227,443 (-)	NCBI

Sequence:

show sequence

CCGCGGGCCCTGAGAAGAAGGGCGGGCGGGCAGGCCGGATTGGGAGGGGCGGGGCCGGGCGGCC
ACAGGCCGGAGGCGCGTCGGGCTGGAGCCGGTCACGATGCCCCGAAGGAAGCAGAGCCACCCGC
AGCCCGTGAAATGCGAGGGGGTCAAAGTGGATACCGAAGACTCCCTCGATGAAGGACCCGGGGC
CCTGGTATTGGAGAGTGATTTGCTACTAGGCCAGGATCTGGAGTTTGAGGAGGAAGAGGAAGAG
GAAGAGGAGGAAGGTGACGGCAACAGCGACCAGCTCATGGGCTTCGAGAGAGACTCTGAAGGAG
ACTCTCTGGGGGCCAGGCCTGGGCTTCCCTACGGGCTGAGTGATGACGAGTCTGGGGGCGGCCG
GCCGCTAAGTGCCGAGAGTGAAGTTGAGGAACCAGCCAGGGGTCCAGGGGAGGCCAGGGGTGAG
AGGCCAGGCCCAGCCTGCCAGCTGTGTGGGGGGCCGACAGGTGAGGGGCCGTGTTGTGGGGCAG
GAGGGCCGGGTGGGGGGCCCCCGCTGCCCCCACGGCTACTATACTCATGCCGCCTCTGCGCCTT
CGTGTCCCACTACTCGAGCCACCTGAAGCGGCACATGCAGACACACAGCGGGGAGAAGCCGTTC
CGCTGTGGCCGCTGCCCCTACGCCTCAGCCCAGCTCGTCAACCTGACGCGACATACCCGCACCC
ACACTGGCGAGAAGCCCTACCGCTGTCCCCACTGCCCCTTTGCCTGCAGCAGCCTGGGCAACCT
GAGGCGGCATCAGCGCACCCACGCGGGGCCCCCCACTCCTCCCTGCCCGACCTGTGGCTTCCGC
TGCTGTGCTCCACGTCCCACCCGGCCTCCCAGTCCCACAGAGCAGGAGGGGGCAGTGCCCCGGC
GACCTGAAGATGCTCTGCTGCTTCCAGATTTGAGCCTCCATGTGCCACCAGGTGGTGCCAGTTT
CCTGCCGGACTGTGGGCAGCTGCGGGGTGAAGGGGAGGGCCTCTGTGGGACTGGATCAGAACCA
CTGCCAGAGCTGCTGTTCCCTTGGACCTGCCGGAACTGTGGACAAGAGCTGGAGGAGGGGGAGG
GTAGTCGGCTGGGAGCTGCCATGTGTGGGCGCTGCATGCGAGGAGAGGCCGGAGGGGGTGCCAG
CGGGGGACCCCAGGGCCCCAGTGACAAAGGCTTCGCCTGTAGCCTCTGCCCCTTTGCCACCCAC
TATCCCAACCACCTGGCTCGGCATATGAAGACGCACAGTGGCGAGAAGCCTTTCCGCTGTGCTC
GCTGTCCCTATGCCTCTGCTCATCTGGATAACCTGAAACGGCACCAGCGTGTCCACACAGGAGA
GAAGCCCTACAAGTGCCCCCTCTGCCCCTATGCCTGTGGCAACCTGGCCAACCTCAAGCGTCAT
GGTCGTATCCACTCTGGGGACAAACCTTTTCGGTGTAGCCTTTGCAACTACAGCTGCAATCAGA
GCATGAACCTCAAACGCCACATGCTGCGGCACACAGGCGAGAAGCCCTTCCGCTGTGCCACCTG
CGCCTACACCACAGGCCACTGGGACAACTACAAACGCCACCAGAAGGTGCATGGCCATGGTGGG
GCAGGAGGGCCTGGCCTCTCTGCCTCTGAGGGTTGGGCCCCGCCTCATAGCCCCTCCTCTGTGT
TGAGCTCTCGGGGTCCCACACCCCTGAGCACTGCAGGTAGCCGGGCTCTCCATACAGACTCACC
CTGAACTAGGTTGTTCTCCCTCAGGGCCCTGTGGATTAGCCCTGACTCTCCTGTACGTTTTATA
CAGATGGACCAGAAGTCACCTTCTACTTCCTCCCCCGCTGGCCAGGGGCTCCACAGACTACCCT
AGGCACTATATGGACCAGCCCAAACCCCATGGGCAAGGGGCCCATATGGACCAGGGGCCTTACT
TGACTGATGCACTTAATGAGCTCAGTGAGAAGGGCCCTGTATTCACCTCCACTGCTCCCAGGGG
CAGCAGAGGAACTGGCTGGGGGACTGCCCAGCCTCCCACCTGTTTATTTAACTTATTTCAGTGC
TTTATAATAAAGGAAACACTAACAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005630319	(Get FASTA)	NCBI Sequence Viewer
	XP_022260283	(Get FASTA)	NCBI Sequence Viewer
	XP_038354473	(Get FASTA)	NCBI Sequence Viewer
	XP_038354474	(Get FASTA)	NCBI Sequence Viewer
	XP_038354475	(Get FASTA)	NCBI Sequence Viewer
	XP_038417026	(Get FASTA)	NCBI Sequence Viewer
	XP_038417027	(Get FASTA)	NCBI Sequence Viewer
	XP_038417028	(Get FASTA)	NCBI Sequence Viewer
	XP_038481077	(Get FASTA)	NCBI Sequence Viewer
	XP_038481078	(Get FASTA)	NCBI Sequence Viewer
	XP_038481079	(Get FASTA)	NCBI Sequence Viewer
	XP_038546982	(Get FASTA)	NCBI Sequence Viewer
	XP_038546983	(Get FASTA)	NCBI Sequence Viewer
	XP_038546984	(Get FASTA)	NCBI Sequence Viewer
	XP_540127	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000007318.4
	ENSCAFP00000058331.2
	ENSCAFP00030014492.1
	ENSCAFP00030014528.1
	ENSCAFP00040016661.1
	ENSCAFP00040016697.1
	ENSCAFP00845010451
	ENSCAFP00845010451.1
	ENSCAFP00845010464
	ENSCAFP00845010464.1

RefSeq Acc Id:

XP_005630319 ⟸ XM_005630262

- Peptide Label:

isoform X2

- Sequence:

show sequence

MPRRKQSHPQPVKCEGVKVDTEDSLDEGPGALVLESDLLLGQDLEFEEEEEEEEEEGDGNSDQL
MGFERDSEGDSLGARPGLPYGLSDDESGGGRPLSAESEVEEPARGPGEARGERPGPACQLCGGP
TGEGPCCGAGGPGGGPPLPPRLLYSCRLCAFVSHYSSHLKRHMQTHSGEKPFRCGRCPYASAQL
VNLTRHTRTHTGEKPYRCPHCPFACSSLGNLRRHQRTHAGPPTPPCPTCGFRCCAPRPTRPPSP
TEQEGAVPRRPEDALLLPDLSLHVPPGGASFLPDCGQLRGEGEGLCGTGSEPLPELLFPWTCRN
CGQELEEGEGSRLGAAMCGRCMRGEAGGGASGGPQGPSDKGFACSLCPFATHYPNHLARHMKTH
SGEKPFRCARCPYASAHLDNLKRHQRVHTGEKPYKCPLCPYACGNLANLKRHGRIHSGDKPFRC
SLCNYSCNQSMNLKRHMLRHTGEKPFRCATCAYTTGHWDNYKRHQKMDQKSPSTSSPAGQGLHR
LP

hide sequence

RefSeq Acc Id:	XP_540127 ⟸ XM_540127
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0N1H1 (UniProtKB/TrEMBL), A0A8C0LN50 (UniProtKB/TrEMBL), A0A8I3MVY7 (UniProtKB/TrEMBL), A0A8I3N3A6 (UniProtKB/TrEMBL), A0A8P0TAA3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPRRKQSHPQPVKCEGVKVDTEDSLDEGPGALVLESDLLLGQDLEFEEEEEEEEEEGDGNSDQL MGFERDSEGDSLGARPGLPYGLSDDESGGGRPLSAESEVEEPARGPGEARGERPGPACQLCGGP TGEGPCCGAGGPGGGPPLPPRLLYSCRLCAFVSHYSSHLKRHMQTHSGEKPFRCGRCPYASAQL VNLTRHTRTHTGEKPYRCPHCPFACSSLGNLRRHQRTHAGPPTPPCPTCGFRCCAPRPTRPPSP TEQEGAVPRRPEDALLLPDLSLHVPPGGASFLPDCGQLRGEGEGLCGTGSEPLPELLFPWTCRN CGQELEEGEGSRLGAAMCGRCMRGEAGGGASGGPQGPSDKGFACSLCPFATHYPNHLARHMKTH SGEKPFRCARCPYASAHLDNLKRHQRVHTGEKPYKCPLCPYACGNLANLKRHGRIHSGDKPFRC SLCNYSCNQSMNLKRHMLRHTGEKPFRCATCAYTTGHWDNYKRHQKVHGHGGAGGPGLSASEGW APPHSPSSVLSSRGPTPLSTAGSRALHTDSP hide sequence

RefSeq Acc Id:	XP_022260283 ⟸ XM_022404575
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0N1K8 (UniProtKB/TrEMBL), A0A8I3N3A6 (UniProtKB/TrEMBL), A0A8P0TAA3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGFERDSEGDSLGARPGLPYGLSDDESGGGRPLSAESEVEEPARGPGEARGERPGPACQLCGGP TGEGPCCGAGGPGGGPPLPPRLLYSCRLCAFVSHYSSHLKRHMQTHSGEKPFRCGRCPYASAQL VNLTRHTRTHTGEKPYRCPHCPFACSSLGNLRRHQRTHAGPPTPPCPTCGFRCCAPRPTRPPSP TEQEGAVPRRPEDALLLPDLSLHVPPGGASFLPDCGQLRGEGEGLCGTGSEPLPELLFPWTCRN CGQELEEGEGSRLGAAMCGRCMRGEAGGGASGGPQGPSDKGFACSLCPFATHYPNHLARHMKTH SGEKPFRCARCPYASAHLDNLKRHQRVHTGEKPYKCPLCPYACGNLANLKRHGRIHSGDKPFRC SLCNYSCNQSMNLKRHMLRHTGEKPFRCATCAYTTGHWDNYKRHQKVHGHGGAGGPGLSASEGW APPHSPSSVLSSRGPTPLSTAGSRALHTDSP hide sequence

RefSeq Acc Id:

ENSCAFP00000058331 ⟸ ENSCAFT00000059872

RefSeq Acc Id:

ENSCAFP00000007318 ⟸ ENSCAFT00000007894

RefSeq Acc Id:	XP_038354475 ⟸ XM_038498547
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038354474 ⟸ XM_038498546
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038354473 ⟸ XM_038498545
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038481079 ⟸ XM_038625151
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038481078 ⟸ XM_038625150
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038481077 ⟸ XM_038625149
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038546984 ⟸ XM_038691056
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0N1K8 (UniProtKB/TrEMBL), A0A8I3N3A6 (UniProtKB/TrEMBL), A0A8P0TAA3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038546983 ⟸ XM_038691055
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038546982 ⟸ XM_038691054
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0N1H1 (UniProtKB/TrEMBL), A0A8C0LN50 (UniProtKB/TrEMBL), A0A8I3MVY7 (UniProtKB/TrEMBL), A0A8I3N3A6 (UniProtKB/TrEMBL), A0A8P0TAA3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038417028 ⟸ XM_038561100
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0N1K8 (UniProtKB/TrEMBL), A0A8I3N3A6 (UniProtKB/TrEMBL), A0A8P0TAA3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038417027 ⟸ XM_038561099
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038417026 ⟸ XM_038561098
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0LN50 (UniProtKB/TrEMBL), A0A8C0N1H1 (UniProtKB/TrEMBL), A0A8I3MVY7 (UniProtKB/TrEMBL), A0A8I3N3A6 (UniProtKB/TrEMBL), A0A8P0TAA3 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845010451 ⟸ ENSCAFT00845013472

RefSeq Acc Id:

ENSCAFP00845010464 ⟸ ENSCAFT00845013487

Protein Domains

C2H2-type

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000004909	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030008968	UniProtKB/TrEMBL
	ENSCAFG00040010350	UniProtKB/TrEMBL
	ENSCAFG00845007642	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000007894.5	UniProtKB/TrEMBL
	ENSCAFT00000059872.2	UniProtKB/TrEMBL
	ENSCAFT00030016589.1	UniProtKB/TrEMBL
	ENSCAFT00030016629.1	UniProtKB/TrEMBL
	ENSCAFT00040019199.1	UniProtKB/TrEMBL
	ENSCAFT00040019244.1	UniProtKB/TrEMBL
	ENSCAFT00845013472	ENTREZGENE
	ENSCAFT00845013472.1	UniProtKB/TrEMBL
	ENSCAFT00845013487	ENTREZGENE
	ENSCAFT00845013487.1	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	Znf_C2H2_sf	UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/TrEMBL
NCBI Gene	ZNF513	ENTREZGENE
PANTHER	PROTEIN ESCARGOT	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 513	UniProtKB/TrEMBL
Pfam	zf-C2H2	UniProtKB/TrEMBL
PROSITE	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
SMART	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57667	UniProtKB/TrEMBL
UniProt	A0A8C0LN50	ENTREZGENE
	A0A8C0N1H1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0N1K8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3MVY7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3N3A6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0TAA3	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:48745	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

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