CHD6 (chromodomain helicase DNA binding protein 6) - Rat Genome Database

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Gene: CHD6 (chromodomain helicase DNA binding protein 6) Canis lupus familiaris
Analyze
Symbol: CHD6
Name: chromodomain helicase DNA binding protein 6
RGD ID: 12355430
Description: ENCODES a protein that exhibits ATP-dependent activity, acting on DNA (ortholog); INVOLVED IN chromatin organization (inferred); DNA duplex unwinding (inferred); positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress (inferred); PARTICIPATES IN nuclear factor, erythroid 2 like 2 signaling pathway; ASSOCIATED WITH adult spinal cord ependymoma (ortholog); neuroblastoma (ortholog); Prostatic Neoplasms (ortholog); FOUND IN nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: chromodomain-helicase-DNA-binding protein 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12429,397,320 - 29,601,206 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2429,397,306 - 29,601,350 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2429,042,568 - 29,246,480 (-)NCBI
ROS_Cfam_1.02430,102,193 - 30,305,887 (-)NCBI
UMICH_Zoey_3.12429,370,977 - 29,574,934 (-)NCBI
UNSW_CanFamBas_1.02429,474,474 - 29,678,500 (-)NCBI
UU_Cfam_GSD_1.02429,971,008 - 30,174,849 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (IEA)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
CHD6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12429,397,320 - 29,601,206 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2429,397,306 - 29,601,350 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2429,042,568 - 29,246,480 (-)NCBI
ROS_Cfam_1.02430,102,193 - 30,305,887 (-)NCBI
UMICH_Zoey_3.12429,370,977 - 29,574,934 (-)NCBI
UNSW_CanFamBas_1.02429,474,474 - 29,678,500 (-)NCBI
UU_Cfam_GSD_1.02429,971,008 - 30,174,849 (-)NCBI
CHD6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2041,402,083 - 41,618,384 (-)EnsemblGRCh38hg38GRCh38
GRCh382041,402,083 - 41,618,377 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372040,030,723 - 40,247,016 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362039,464,584 - 39,680,547 (-)NCBINCBI36hg18NCBI36
Build 342039,464,583 - 39,680,547NCBI
Celera2036,741,838 - 36,957,790 (-)NCBI
Cytogenetic Map20q12NCBI
HuRef2036,768,458 - 36,984,731 (-)NCBIHuRef
CHM1_12039,935,021 - 40,151,300 (-)NCBICHM1_1
Chd6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392160,788,898 - 160,951,006 (-)NCBIGRCm39mm39
GRCm39 Ensembl2160,788,898 - 160,950,995 (-)Ensembl
GRCm382160,946,978 - 161,109,086 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2160,946,978 - 161,109,075 (-)EnsemblGRCm38mm10GRCm38
MGSCv372160,772,714 - 160,934,792 (-)NCBIGRCm37mm9NCBIm37
MGSCv362160,638,419 - 160,800,497 (-)NCBImm8
Celera2166,877,653 - 167,040,009 (-)NCBICelera
Cytogenetic Map2H2NCBI
Chd6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23149,596,509 - 149,757,765 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl3149,596,509 - 149,757,755 (-)Ensembl
Rnor_6.03156,937,746 - 157,099,328 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3156,937,733 - 157,099,306 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03163,164,938 - 163,324,764 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43151,741,389 - 151,924,668 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13151,647,823 - 151,830,771 (-)NCBI
Celera3148,269,027 - 148,429,163 (-)NCBICelera
Cytogenetic Map3q42NCBI
Chd6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544515,360,025 - 15,560,988 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544515,360,074 - 15,576,410 (+)NCBIChiLan1.0ChiLan1.0
CHD6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12038,839,685 - 38,988,719 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2038,839,685 - 38,999,501 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02037,744,012 - 37,953,593 (-)NCBIMhudiblu_PPA_v0panPan3
Chd6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640178,354,920 - 178,570,711 (-)NCBI
SpeTri2.0NW_004936561238,307 - 394,082 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHD6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1744,047,803 - 44,265,431 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11744,048,056 - 44,265,472 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21749,502,246 - 49,555,890 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CHD6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1222,163,836 - 22,373,098 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl222,223,919 - 22,373,275 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605070,981,245 - 71,189,656 (+)NCBIVero_WHO_p1.0
Chd6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462479012,610,418 - 12,858,062 (+)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 6 9 5
Low 5 5 16 6 6 6 6 6 3 8 5 6
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005635070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014107014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014107015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014107017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038433849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038433850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038433851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038433852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038433853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038433854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038457550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038457551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038457552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038457553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038508997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038508998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038509000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038509001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038509002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038509003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038572333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038572334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038572335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038572336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038572337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038572338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038636586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038636587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038636589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038636590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038636591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038636592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000014716   ⟹   ENSCAFP00000013610
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2429,399,752 - 29,601,350 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000048852   ⟹   ENSCAFP00000039028
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2429,397,306 - 29,546,439 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000063381   ⟹   ENSCAFP00000045573
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2429,397,306 - 29,601,350 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000077446   ⟹   ENSCAFP00000059254
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2429,400,608 - 29,601,350 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000078388   ⟹   ENSCAFP00000064290
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2429,404,605 - 29,546,439 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000085379   ⟹   ENSCAFP00000064262
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2429,397,306 - 29,546,439 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000087514   ⟹   ENSCAFP00000066186
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2429,397,306 - 29,546,439 (-)Ensembl
RefSeq Acc Id: XM_014107014   ⟹   XP_013962489
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12429,397,320 - 29,601,178 (-)NCBI
Dog10K_Boxer_Tasha2429,042,568 - 29,246,435 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014107015   ⟹   XP_013962490
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12429,397,320 - 29,601,206 (-)NCBI
Dog10K_Boxer_Tasha2429,042,568 - 29,246,476 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038433849   ⟹   XP_038289777
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02430,102,193 - 30,305,883 (-)NCBI
RefSeq Acc Id: XM_038433850   ⟹   XP_038289778
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02430,102,193 - 30,305,842 (-)NCBI
RefSeq Acc Id: XM_038433851   ⟹   XP_038289779
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02430,102,193 - 30,297,360 (-)NCBI
RefSeq Acc Id: XM_038433852   ⟹   XP_038289780
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02430,102,193 - 30,305,877 (-)NCBI
RefSeq Acc Id: XM_038433853   ⟹   XP_038289781
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02430,102,193 - 30,305,883 (-)NCBI
RefSeq Acc Id: XM_038433854   ⟹   XP_038289782
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02430,106,775 - 30,305,887 (-)NCBI
RefSeq Acc Id: XM_038457550   ⟹   XP_038313478
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2429,042,568 - 29,237,737 (-)NCBI
RefSeq Acc Id: XM_038457551   ⟹   XP_038313479
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2429,042,568 - 29,246,470 (-)NCBI
RefSeq Acc Id: XM_038457552   ⟹   XP_038313480
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2429,042,568 - 29,246,476 (-)NCBI
RefSeq Acc Id: XM_038457553   ⟹   XP_038313481
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2429,045,903 - 29,246,480 (-)NCBI
RefSeq Acc Id: XM_038508997   ⟹   XP_038364925
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12429,370,977 - 29,574,930 (-)NCBI
RefSeq Acc Id: XM_038508998   ⟹   XP_038364926
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12429,370,977 - 29,574,889 (-)NCBI
RefSeq Acc Id: XM_038509000   ⟹   XP_038364928
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12429,370,977 - 29,566,184 (-)NCBI
RefSeq Acc Id: XM_038509001   ⟹   XP_038364929
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12429,370,977 - 29,574,924 (-)NCBI
RefSeq Acc Id: XM_038509002   ⟹   XP_038364930
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12429,370,977 - 29,574,930 (-)NCBI
RefSeq Acc Id: XM_038509003   ⟹   XP_038364931
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12429,374,355 - 29,574,934 (-)NCBI
RefSeq Acc Id: XM_038572333   ⟹   XP_038428261
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02429,971,008 - 30,174,845 (-)NCBI
RefSeq Acc Id: XM_038572334   ⟹   XP_038428262
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02429,971,008 - 30,174,804 (-)NCBI
RefSeq Acc Id: XM_038572335   ⟹   XP_038428263
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02429,971,008 - 30,166,324 (-)NCBI
RefSeq Acc Id: XM_038572336   ⟹   XP_038428264
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02429,971,008 - 30,174,839 (-)NCBI
RefSeq Acc Id: XM_038572337   ⟹   XP_038428265
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02429,971,008 - 30,174,845 (-)NCBI
RefSeq Acc Id: XM_038572338   ⟹   XP_038428266
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02429,974,388 - 30,174,849 (-)NCBI
RefSeq Acc Id: XM_038636586   ⟹   XP_038492514
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02429,474,474 - 29,678,496 (-)NCBI
RefSeq Acc Id: XM_038636587   ⟹   XP_038492515
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02429,474,474 - 29,678,455 (-)NCBI
RefSeq Acc Id: XM_038636589   ⟹   XP_038492517
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02429,474,474 - 29,669,739 (-)NCBI
RefSeq Acc Id: XM_038636590   ⟹   XP_038492518
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02429,474,474 - 29,678,490 (-)NCBI
RefSeq Acc Id: XM_038636591   ⟹   XP_038492519
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02429,474,474 - 29,678,496 (-)NCBI
RefSeq Acc Id: XM_038636592   ⟹   XP_038492520
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02429,477,812 - 29,678,500 (-)NCBI
Protein Sequences
Protein RefSeqs XP_013962489 (Get FASTA)   NCBI Sequence Viewer  
  XP_013962490 (Get FASTA)   NCBI Sequence Viewer  
  XP_038289777 (Get FASTA)   NCBI Sequence Viewer  
  XP_038289778 (Get FASTA)   NCBI Sequence Viewer  
  XP_038289779 (Get FASTA)   NCBI Sequence Viewer  
  XP_038289780 (Get FASTA)   NCBI Sequence Viewer  
  XP_038289781 (Get FASTA)   NCBI Sequence Viewer  
  XP_038289782 (Get FASTA)   NCBI Sequence Viewer  
  XP_038313478 (Get FASTA)   NCBI Sequence Viewer  
  XP_038313479 (Get FASTA)   NCBI Sequence Viewer  
  XP_038313480 (Get FASTA)   NCBI Sequence Viewer  
  XP_038313481 (Get FASTA)   NCBI Sequence Viewer  
  XP_038364925 (Get FASTA)   NCBI Sequence Viewer  
  XP_038364926 (Get FASTA)   NCBI Sequence Viewer  
  XP_038364928 (Get FASTA)   NCBI Sequence Viewer  
  XP_038364929 (Get FASTA)   NCBI Sequence Viewer  
  XP_038364930 (Get FASTA)   NCBI Sequence Viewer  
  XP_038364931 (Get FASTA)   NCBI Sequence Viewer  
  XP_038428261 (Get FASTA)   NCBI Sequence Viewer  
  XP_038428262 (Get FASTA)   NCBI Sequence Viewer  
  XP_038428263 (Get FASTA)   NCBI Sequence Viewer  
  XP_038428264 (Get FASTA)   NCBI Sequence Viewer  
  XP_038428265 (Get FASTA)   NCBI Sequence Viewer  
  XP_038428266 (Get FASTA)   NCBI Sequence Viewer  
  XP_038492514 (Get FASTA)   NCBI Sequence Viewer  
  XP_038492515 (Get FASTA)   NCBI Sequence Viewer  
  XP_038492517 (Get FASTA)   NCBI Sequence Viewer  
  XP_038492518 (Get FASTA)   NCBI Sequence Viewer  
  XP_038492519 (Get FASTA)   NCBI Sequence Viewer  
  XP_038492520 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013962490   ⟸   XM_014107015
- Peptide Label: isoform X1
- UniProtKB: J9P0F6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013962489   ⟸   XM_014107014
- Peptide Label: isoform X1
- UniProtKB: J9P0F6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000064290   ⟸   ENSCAFT00000078388
RefSeq Acc Id: ENSCAFP00000059254   ⟸   ENSCAFT00000077446
RefSeq Acc Id: ENSCAFP00000045573   ⟸   ENSCAFT00000063381
RefSeq Acc Id: ENSCAFP00000013610   ⟸   ENSCAFT00000014716
RefSeq Acc Id: ENSCAFP00000066186   ⟸   ENSCAFT00000087514
RefSeq Acc Id: ENSCAFP00000039028   ⟸   ENSCAFT00000048852
RefSeq Acc Id: ENSCAFP00000064262   ⟸   ENSCAFT00000085379
RefSeq Acc Id: XP_038364930   ⟸   XM_038509002
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038364925   ⟸   XM_038508997
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038364929   ⟸   XM_038509001
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038364926   ⟸   XM_038508998
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038364928   ⟸   XM_038509000
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038364931   ⟸   XM_038509003
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038492519   ⟸   XM_038636591
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038492514   ⟸   XM_038636586
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038492518   ⟸   XM_038636590
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038492515   ⟸   XM_038636587
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038492517   ⟸   XM_038636589
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038492520   ⟸   XM_038636592
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038289781   ⟸   XM_038433853
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038289777   ⟸   XM_038433849
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038289780   ⟸   XM_038433852
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038289778   ⟸   XM_038433850
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038289779   ⟸   XM_038433851
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038289782   ⟸   XM_038433854
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038313480   ⟸   XM_038457552
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038313479   ⟸   XM_038457551
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038313478   ⟸   XM_038457550
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038313481   ⟸   XM_038457553
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038428265   ⟸   XM_038572337
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038428261   ⟸   XM_038572333
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038428264   ⟸   XM_038572336
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038428262   ⟸   XM_038572334
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038428263   ⟸   XM_038572335
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038428266   ⟸   XM_038572338
- Peptide Label: isoform X4

Promoters
RGD ID:13687613
Promoter ID:EPDNEW_C5681
Type:initiation region
Name:CHD6_1
Description:chromodomain helicase DNA binding protein 6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12429,601,132 - 29,601,192EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000009236 Ensembl
NCBI Gene CHD6 ENTREZGENE
UniProt J9P0F6 ENTREZGENE
VGNC ID VGNC:39204 ENTREZGENE