VASN (vasorin) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: VASN (vasorin) Canis lupus familiaris
Analyze
Symbol: VASN
Name: vasorin
RGD ID: 12354347
Description: ENCODES a protein that exhibits transforming growth factor beta binding (inferred); INVOLVED IN cellular response to hypoxia (ortholog); cellular response to redox state (ortholog); ASSOCIATED WITH epilepsy (ortholog); genetic disease (ortholog); hepatocellular carcinoma (ortholog); FOUND IN cell surface (inferred); extracellular exosome (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1637,014,704 - 37,025,734 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl637,015,333 - 37,017,351 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha638,343,008 - 38,354,053 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0637,219,012 - 37,230,058 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl637,219,014 - 37,230,061 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1637,013,260 - 37,024,304 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0636,906,434 - 36,917,479 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0637,307,717 - 37,318,765 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
VASN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1637,014,704 - 37,025,734 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl637,015,333 - 37,017,351 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha638,343,008 - 38,354,053 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0637,219,012 - 37,230,058 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl637,219,014 - 37,230,061 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1637,013,260 - 37,024,304 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0636,906,434 - 36,917,479 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0637,307,717 - 37,318,765 (-)NCBIUU_Cfam_GSD_1.0
VASN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38164,371,848 - 4,383,538 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl164,371,848 - 4,383,538 (+)EnsemblGRCh38hg38GRCh38
GRCh37164,421,849 - 4,433,539 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36164,361,850 - 4,373,530 (+)NCBINCBI36Build 36hg18NCBI36
Celera164,630,756 - 4,642,436 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef164,389,019 - 4,400,698 (+)NCBIHuRef
CHM1_1164,421,602 - 4,433,268 (+)NCBICHM1_1
T2T-CHM13v2.0164,401,028 - 4,412,717 (+)NCBIT2T-CHM13v2.0
Vasn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39164,457,809 - 4,469,030 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl164,457,805 - 4,468,666 (+)EnsemblGRCm39 Ensembl
GRCm38164,639,945 - 4,651,166 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl164,639,941 - 4,650,802 (+)EnsemblGRCm38mm10GRCm38
MGSCv37164,639,945 - 4,651,166 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36164,555,222 - 4,566,010 (+)NCBIMGSCv36mm8
Celera165,269,412 - 5,281,840 (+)NCBICelera
Cytogenetic Map16A1NCBI
cM Map162.46NCBI
Vasn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81011,424,174 - 11,434,681 (-)NCBIGRCr8
mRatBN7.21010,917,750 - 10,928,259 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1010,917,605 - 10,928,357 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1015,626,434 - 15,636,959 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01015,115,254 - 15,125,777 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01010,784,386 - 10,794,916 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01011,121,041 - 11,131,548 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1011,121,041 - 11,131,548 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0109,886,399 - 9,896,906 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41011,047,084 - 11,057,591 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera109,880,012 - 9,890,519 (-)NCBICelera
Cytogenetic Map10q12NCBI
Vasn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544213,060,923 - 13,071,303 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544213,060,923 - 13,071,303 (-)NCBIChiLan1.0ChiLan1.0
VASN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2184,902,858 - 4,915,238 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1168,693,212 - 8,704,924 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0163,298,836 - 3,310,548 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1164,466,452 - 4,478,154 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl164,475,506 - 4,477,527 (+)Ensemblpanpan1.1panPan2
Vasn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344106,570,513 - 106,581,227 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936694128,273 - 138,954 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936694128,398 - 138,954 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VASN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl337,961,432 - 37,972,114 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1337,961,425 - 37,972,477 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2339,016,527 - 39,029,208 (-)NCBISscrofa10.2Sscrofa10.2susScr3
VASN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.154,052,239 - 4,063,884 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606826,628,008 - 26,639,659 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vasn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248242,155,589 - 2,164,796 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248242,154,646 - 2,164,796 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in VASN
73 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 8 2 4 2 6 1 9 4
Low 5 5 14 4 2 4 5 11 8 1 2
Below cutoff 1

Sequence


RefSeq Acc Id: ENSCAFT00000030511   ⟹   ENSCAFP00000033001
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl637,015,333 - 37,017,351 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845002291   ⟹   ENSCAFP00845001817
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl637,219,014 - 37,230,061 (-)Ensembl
RefSeq Acc Id: XM_003434863   ⟹   XP_003434911
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1637,014,704 - 37,025,734 (-)NCBI
Dog10K_Boxer_Tasha638,343,008 - 38,354,053 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038479304   ⟹   XP_038335232
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1637,013,260 - 37,024,304 (-)NCBI
RefSeq Acc Id: XM_038540554   ⟹   XP_038396482
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0637,307,717 - 37,318,765 (-)NCBI
RefSeq Acc Id: XM_038604651   ⟹   XP_038460579
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0636,906,434 - 36,917,479 (-)NCBI
RefSeq Acc Id: XM_038669340   ⟹   XP_038525268
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0637,219,012 - 37,230,058 (-)NCBI
RefSeq Acc Id: XP_003434911   ⟸   XM_003434863
- UniProtKB: A0A8C0RCN8 (UniProtKB/TrEMBL),   A0A8C0LMP4 (UniProtKB/TrEMBL),   A0A8I3MK79 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000033001   ⟸   ENSCAFT00000030511
RefSeq Acc Id: XP_038335232   ⟸   XM_038479304
RefSeq Acc Id: XP_038460579   ⟸   XM_038604651
RefSeq Acc Id: XP_038525268   ⟸   XM_038669340
- UniProtKB: A0A8C0RCN8 (UniProtKB/TrEMBL),   A0A8C0LMP4 (UniProtKB/TrEMBL),   A0A8I3MK79 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038396482   ⟸   XM_038540554
- UniProtKB: A0A8C0LMP4 (UniProtKB/TrEMBL),   A0A8C0RCN8 (UniProtKB/TrEMBL),   A0A8I3MK79 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845001817   ⟸   ENSCAFT00845002291
Protein Domains
EGF-like   Fibronectin type-III


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000019224 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030004653 UniProtKB/TrEMBL
  ENSCAFG00040014866 UniProtKB/TrEMBL
  ENSCAFG00845001337 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000030511.3 UniProtKB/TrEMBL
  ENSCAFT00030008521.1 UniProtKB/TrEMBL
  ENSCAFT00040027392.1 UniProtKB/TrEMBL
  ENSCAFT00845002291 ENTREZGENE
  ENSCAFT00845002291.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro Cys-rich_flank_reg_C UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
KEGG Report cfa:100688709 UniProtKB/TrEMBL
NCBI Gene VASN ENTREZGENE
PANTHER ANTIGEN BSP, PUTATIVE-RELATED UniProtKB/TrEMBL
  VASORIN UniProtKB/TrEMBL
Pfam fn3 UniProtKB/TrEMBL
  LRR_8 UniProtKB/TrEMBL
PRINTS LEURICHRPT UniProtKB/TrEMBL
PROSITE EGF_1 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
  LRR UniProtKB/TrEMBL
SMART FN3 UniProtKB/TrEMBL
  LRR_SD22 UniProtKB/TrEMBL
  LRR_TYP UniProtKB/TrEMBL
  LRRCT UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
  L domain-like UniProtKB/TrEMBL
  SSF49265 UniProtKB/TrEMBL
UniProt A0A8C0LMP4 ENTREZGENE
  A0A8C0RCN8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MK79 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:54089 ENTREZGENE