OCSTAMP (osteoclast stimulatory transmembrane protein) - Rat Genome Database

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Gene: OCSTAMP (osteoclast stimulatory transmembrane protein) Canis lupus familiaris
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Symbol: OCSTAMP
Name: osteoclast stimulatory transmembrane protein
RGD ID: 12354340
Description: INVOLVED IN positive regulation of macrophage fusion (ortholog); ASSOCIATED WITH focal epilepsy (ortholog); genetic disease (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C24H20orf123
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12433,796,582 - 33,802,385 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2433,796,027 - 33,802,270 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2433,256,850 - 33,263,138 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02434,505,222 - 34,511,487 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2434,505,960 - 34,509,115 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12433,762,334 - 33,766,264 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02433,879,039 - 33,885,338 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02434,417,948 - 34,424,217 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
OCSTAMP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12433,796,582 - 33,802,385 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2433,796,027 - 33,802,270 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2433,256,850 - 33,263,138 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02434,505,222 - 34,511,487 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2434,505,960 - 34,509,115 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12433,762,334 - 33,766,264 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02433,879,039 - 33,885,338 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02434,417,948 - 34,424,217 (-)NCBIUU_Cfam_GSD_1.0
OCSTAMP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382046,540,946 - 46,550,654 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2046,540,946 - 46,550,654 (-)EnsemblGRCh38hg38GRCh38
GRCh372045,169,585 - 45,179,293 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362044,603,075 - 44,612,620 (-)NCBINCBI36Build 36hg18NCBI36
Celera2041,880,995 - 41,890,661 (-)NCBICelera
Cytogenetic Map20q13.12NCBI
HuRef2041,910,547 - 41,920,133 (-)NCBIHuRef
CHM1_12045,072,274 - 45,081,828 (-)NCBICHM1_1
T2T-CHM13v2.02048,277,079 - 48,286,798 (-)NCBIT2T-CHM13v2.0
Ocstamp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392165,237,370 - 165,242,314 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2165,235,680 - 165,242,325 (-)EnsemblGRCm39 Ensembl
GRCm382165,395,450 - 165,400,394 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2165,393,760 - 165,400,405 (-)EnsemblGRCm38mm10GRCm38
MGSCv372165,220,950 - 165,225,894 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362165,086,655 - 165,091,599 (-)NCBIMGSCv36mm8
Celera2171,337,645 - 171,342,591 (-)NCBICelera
Cytogenetic Map2H3NCBI
cM Map285.53NCBI
Ocstamp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83174,550,420 - 174,560,907 (-)NCBIGRCr8
mRatBN7.23154,131,113 - 154,141,611 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3154,132,328 - 154,136,991 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.03162,073,573 - 162,080,487 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3162,075,340 - 162,080,192 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03168,255,822 - 168,262,735 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43156,438,652 - 156,442,984 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13156,327,279 - 156,349,020 (-)NCBI
Celera3152,729,869 - 152,736,787 (-)NCBICelera
Cytogenetic Map3q42NCBI
Ocstamp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544510,836,545 - 10,842,410 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544510,836,404 - 10,842,811 (+)NCBIChiLan1.0ChiLan1.0
OCSTAMP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22152,276,361 - 52,285,823 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12052,269,480 - 52,278,928 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02042,873,552 - 42,883,785 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12043,958,499 - 43,968,118 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2043,958,736 - 43,968,110 (-)Ensemblpanpan1.1panPan2
Ocstamp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640191,147,882 - 191,155,622 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365146,601,637 - 6,608,785 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365146,601,580 - 6,608,785 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OCSTAMP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1748,703,941 - 48,711,144 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11748,703,937 - 48,711,690 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21754,443,438 - 54,450,669 (-)NCBISscrofa10.2Sscrofa10.2susScr3
OCSTAMP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1217,331,486 - 17,340,460 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl217,332,024 - 17,340,162 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605065,975,515 - 65,983,666 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ocstamp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247908,110,491 - 8,116,657 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in OCSTAMP
95 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system nervous system reproductive system respiratory system adipose tissue
High
Medium
Low 1 2 1
Below cutoff 1 3 5 1 3 1 3 4 5 4 3

Sequence


RefSeq Acc Id: ENSCAFT00000039166   ⟹   ENSCAFP00000034981
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2433,796,027 - 33,802,270 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000087076   ⟹   ENSCAFP00000064958
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2433,796,027 - 33,800,049 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845034148   ⟹   ENSCAFP00845026734
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2434,505,960 - 34,509,115 (-)Ensembl
RefSeq Acc Id: XM_022409459   ⟹   XP_022265167
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12433,796,582 - 33,802,385 (-)NCBI
Dog10K_Boxer_Tasha2433,256,850 - 33,263,138 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038432878   ⟹   XP_038288806
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02434,505,222 - 34,511,487 (-)NCBI
RefSeq Acc Id: XM_038509641   ⟹   XP_038365569
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12433,762,334 - 33,766,264 (-)NCBI
RefSeq Acc Id: XM_038571383   ⟹   XP_038427311
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02434,417,948 - 34,424,217 (-)NCBI
RefSeq Acc Id: XM_038635582   ⟹   XP_038491510
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02433,879,039 - 33,885,338 (-)NCBI
RefSeq Acc Id: XP_022265167   ⟸   XM_022409459
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KR82 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000034981   ⟸   ENSCAFT00000039166
RefSeq Acc Id: ENSCAFP00000064958   ⟸   ENSCAFT00000087076
RefSeq Acc Id: XP_038365569   ⟸   XM_038509641
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038491510   ⟸   XM_038635582
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038288806   ⟸   XM_038432878
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KR82 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038427311   ⟸   XM_038571383
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KR82 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845026734   ⟸   ENSCAFT00845034148

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000010435 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00845019351 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000039166.4 UniProtKB/TrEMBL
  ENSCAFT00845034148.1 UniProtKB/TrEMBL
InterPro DC_STAMP-like UniProtKB/TrEMBL
NCBI Gene OCSTAMP ENTREZGENE
PANTHER DENDRITIC CELL-SPECIFIC TRANSMEMBRANE PROTEIN UniProtKB/TrEMBL
  OSTEOCLAST STIMULATORY TRANSMEMBRANE PROTEIN UniProtKB/TrEMBL
Pfam DC_STAMP UniProtKB/TrEMBL
UniProt A0A8C0KR82 ENTREZGENE
  A0A8I3S116_CANLF UniProtKB/TrEMBL
  A0A8P0SQK0_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:54657 ENTREZGENE