TEKT4 (tektin 4) - Rat Genome Database

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Gene: TEKT4 (tektin 4) Canis lupus familiaris
Analyze
Symbol: TEKT4
Name: tektin 4
RGD ID: 12353041
Description: INVOLVED IN cilium movement involved in cell motility (ortholog); regulation of brood size (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog); axonemal microtubule (ortholog); sperm midpiece (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC490081; tektin-4
RGD Orthologs
Human
Mouse
Rat
Bonobo
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1639,590,912 - 39,596,672 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha640,857,097 - 40,862,854 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0639,935,527 - 39,941,285 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl639,935,448 - 39,941,725 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1639,611,991 - 39,617,745 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0639,584,633 - 39,590,380 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0640,063,330 - 40,069,088 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TEKT4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1639,590,912 - 39,596,672 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha640,857,097 - 40,862,854 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0639,935,527 - 39,941,285 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl639,935,448 - 39,941,725 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1639,611,991 - 39,617,745 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0639,584,633 - 39,590,380 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0640,063,330 - 40,069,088 (+)NCBIUU_Cfam_GSD_1.0
TEKT4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38294,871,430 - 94,876,823 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl294,871,430 - 94,876,823 (+)EnsemblGRCh38hg38GRCh38
GRCh37295,537,175 - 95,542,568 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36294,900,959 - 94,906,295 (+)NCBINCBI36Build 36hg18NCBI36
Celera289,887,633 - 89,892,969 (+)NCBICelera
Cytogenetic Map2q11.1NCBI
HuRef289,566,262 - 89,571,598 (+)NCBIHuRef
CHM1_1295,541,540 - 95,546,876 (+)NCBICHM1_1
T2T-CHM13v2.0295,377,957 - 95,383,351 (+)NCBIT2T-CHM13v2.0
Tekt4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391725,673,511 - 25,695,576 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1725,673,515 - 25,695,576 (+)EnsemblGRCm39 Ensembl
GRCm381725,454,549 - 25,476,602 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1725,454,615 - 25,476,602 (+)EnsemblGRCm38mm10GRCm38
MGSCv371725,608,535 - 25,613,539 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361725,199,181 - 25,204,200 (+)NCBIMGSCv36mm8
Celera1726,000,231 - 26,005,233 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.6NCBI
Tekt4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81014,992,284 - 14,997,460 (+)NCBIGRCr8
mRatBN7.21014,487,760 - 14,492,936 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1014,487,760 - 14,492,936 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1019,228,280 - 19,233,448 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01018,717,151 - 18,722,319 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01014,216,324 - 14,221,492 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01014,828,642 - 14,833,818 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1014,828,597 - 14,833,827 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01014,644,898 - 14,650,074 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41014,721,884 - 14,727,060 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11014,721,883 - 14,727,060 (+)NCBI
Celera1014,158,676 - 14,163,852 (+)NCBICelera
Cytogenetic Map10q12NCBI
LOC117978981
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21234,080,917 - 34,086,217 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A34,083,728 - 34,088,976 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A104,533,252 - 104,538,659 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
Tekt4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344111,944,656 - 111,949,974 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650142,686 - 47,771 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650142,686 - 47,771 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC110259951
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl340,738,135 - 40,744,248 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1340,738,065 - 40,744,248 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TEKT4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112108,535,947 - 108,543,823 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl12108,535,895 - 108,541,359 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603896,935,169 - 96,940,598 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in TEKT4
83 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 6 6 8 1
Low 3 11 4 5 4 1 8 3
Below cutoff 5 2 5 2 1 2 5 6 2 1 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00845043513   ⟹   ENSCAFP00845034090
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl639,935,448 - 39,941,725 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845043573   ⟹   ENSCAFP00845034134
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl639,935,448 - 39,941,283 (+)Ensembl
RefSeq Acc Id: XM_038479586   ⟹   XP_038335514
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1639,611,991 - 39,617,745 (+)NCBI
RefSeq Acc Id: XM_038540860   ⟹   XP_038396788
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0640,063,330 - 40,069,088 (+)NCBI
RefSeq Acc Id: XM_038604982   ⟹   XP_038460910
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0639,584,633 - 39,590,380 (+)NCBI
RefSeq Acc Id: XM_038669661   ⟹   XP_038525589
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0639,935,527 - 39,941,285 (+)NCBI
RefSeq Acc Id: XM_547201   ⟹   XP_547201
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1639,590,912 - 39,596,672 (+)NCBI
Dog10K_Boxer_Tasha640,857,097 - 40,862,854 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_547201   ⟸   XM_547201
- Peptide Label: isoform X1
- UniProtKB: A0A8I3PMH2 (UniProtKB/TrEMBL),   A0A8P0NKS4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038335514   ⟸   XM_038479586
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038460910   ⟸   XM_038604982
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038525589   ⟸   XM_038669661
- Peptide Label: isoform X1
- UniProtKB: A0A8I3PMH2 (UniProtKB/TrEMBL),   A0A8P0NKS4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038396788   ⟸   XM_038540860
- Peptide Label: isoform X2
- UniProtKB: A0A8I3PMH2 (UniProtKB/TrEMBL),   A0A8P0NKS4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845034134   ⟸   ENSCAFT00845043573
RefSeq Acc Id: ENSCAFP00845034090   ⟸   ENSCAFT00845043513


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000019597 UniProtKB/TrEMBL
  ENSCAFG00845024643 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000031151.5 UniProtKB/TrEMBL
  ENSCAFT00845043513.1 UniProtKB/TrEMBL
  ENSCAFT00845043573 ENTREZGENE
  ENSCAFT00845043573.1 UniProtKB/TrEMBL
InterPro Tektin UniProtKB/TrEMBL
  Tektin-like UniProtKB/TrEMBL
KEGG Report cfa:490081 UniProtKB/TrEMBL
NCBI Gene LOC490081 ENTREZGENE
PANTHER PTHR19960 UniProtKB/TrEMBL
  TEKTIN-4 UniProtKB/TrEMBL
Pfam Tektin UniProtKB/TrEMBL
PRINTS TEKTIN UniProtKB/TrEMBL
UniProt A0A8I3PMH2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3Q3V3_CANLF UniProtKB/TrEMBL
  A0A8P0NKS4 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:103709 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-12 TEKT4  tektin 4  LOC490081  tektin-4  Symbol and/or name change 5135510 APPROVED