PCDH1 (protocadherin 1) - Rat Genome Database

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Gene: PCDH1 (protocadherin 1) Canis lupus familiaris
Analyze
Symbol: PCDH1
Name: protocadherin 1
RGD ID: 12352459
Description: ENCODES a protein that exhibits calcium ion binding (inferred); INVOLVED IN cell adhesion (inferred); homophilic cell adhesion via plasma membrane adhesion molecules (inferred); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); genetic disease (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN cell junction (inferred); intracellular membrane-bounded organelle (inferred); nucleolus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protocadherin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1236,813,663 - 36,836,941 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl236,813,657 - 36,836,497 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha233,863,495 - 33,889,885 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0237,265,925 - 37,292,153 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl237,265,589 - 37,291,537 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1234,340,392 - 34,366,791 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0235,151,686 - 35,177,896 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0235,959,180 - 35,985,407 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:37756605  


Genomics

Comparative Map Data
PCDH1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1236,813,663 - 36,836,941 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl236,813,657 - 36,836,497 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha233,863,495 - 33,889,885 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0237,265,925 - 37,292,153 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl237,265,589 - 37,291,537 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1234,340,392 - 34,366,791 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0235,151,686 - 35,177,896 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0235,959,180 - 35,985,407 (-)NCBIUU_Cfam_GSD_1.0
PCDH1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385141,853,090 - 141,878,410 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5141,853,090 - 141,879,246 (-)EnsemblGRCh38hg38GRCh38
GRCh375141,232,655 - 141,257,975 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365141,212,856 - 141,238,128 (-)NCBINCBI36Build 36hg18NCBI36
Build 345141,212,858 - 141,238,128NCBI
Celera5137,309,824 - 137,335,077 (-)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5136,376,728 - 136,401,983 (-)NCBIHuRef
CHM1_15140,666,027 - 140,691,306 (-)NCBICHM1_1
T2T-CHM13v2.05142,379,045 - 142,404,656 (-)NCBIT2T-CHM13v2.0
Pcdh1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391838,318,967 - 38,345,023 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1838,318,967 - 38,345,106 (-)EnsemblGRCm39 Ensembl
GRCm381838,185,914 - 38,212,048 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1838,185,914 - 38,212,053 (-)EnsemblGRCm38mm10GRCm38
MGSCv371838,356,348 - 38,369,416 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361838,322,668 - 38,335,736 (-)NCBIMGSCv36mm8
Celera1839,540,949 - 39,554,018 (-)NCBICelera
Cytogenetic Map18B3NCBI
cM Map1820.08NCBI
Pcdh1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81830,258,154 - 30,290,828 (-)NCBIGRCr8
mRatBN7.21830,011,692 - 30,039,679 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1830,013,185 - 30,039,318 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01831,330,081 - 31,343,147 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1831,328,919 - 31,343,797 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01831,011,244 - 31,023,532 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41831,110,955 - 31,124,786 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11831,137,850 - 31,157,777 (-)NCBI
Celera1829,658,359 - 29,671,795 (-)NCBICelera
Cytogenetic Map18p11NCBI
Pcdh1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541511,916,092 - 11,934,658 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541511,916,095 - 11,934,658 (+)NCBIChiLan1.0ChiLan1.0
PCDH1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24137,097,517 - 137,125,958 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15135,237,073 - 135,265,510 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05137,209,537 - 137,237,977 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15143,323,710 - 143,349,575 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5143,324,641 - 143,345,042 (-)Ensemblpanpan1.1panPan2
Pcdh1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213150,723,092 - 150,746,625 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650412,296,324 - 12,320,611 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650412,293,889 - 12,320,598 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PCDH1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2143,475,935 - 143,501,487 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12143,475,931 - 143,501,204 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22149,679,040 - 149,699,032 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PCDH1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12344,483,355 - 44,510,131 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2344,481,056 - 44,500,780 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603433,341,659 - 33,368,634 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pcdh1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247741,071,155 - 1,097,854 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247741,071,155 - 1,097,960 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PCDH1
192 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 9 2 6 12 8 1
Low 5 5 13 6 4 6 6 2 5
Below cutoff 8

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003638913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005617312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005617313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014108005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038469678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038469679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038469680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038469681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038530453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038530455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038530456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038530457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038594689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038594690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038594691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038594692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038658740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038658741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038658742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038658743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000010064   ⟹   ENSCAFP00000009335
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl236,813,657 - 36,836,497 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000071847   ⟹   ENSCAFP00000053144
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl236,815,362 - 36,828,360 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000077139   ⟹   ENSCAFP00000061387
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl236,815,386 - 36,836,497 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000085835   ⟹   ENSCAFP00000054743
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl236,813,657 - 36,828,360 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000090468   ⟹   ENSCAFP00000047652
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl236,813,657 - 36,836,497 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845030243   ⟹   ENSCAFP00845023715
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl237,265,589 - 37,291,537 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845030266   ⟹   ENSCAFP00845023732
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl237,269,118 - 37,291,537 (-)Ensembl
RefSeq Acc Id: XM_003638913   ⟹   XP_003638961
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1236,813,663 - 36,836,424 (-)NCBI
Dog10K_Boxer_Tasha233,863,495 - 33,889,281 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005617312   ⟹   XP_005617369
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1236,813,663 - 36,834,136 (-)NCBI
Dog10K_Boxer_Tasha233,863,495 - 33,887,102 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005617313   ⟹   XP_005617370
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1236,814,112 - 36,836,424 (-)NCBI
Dog10K_Boxer_Tasha233,867,065 - 33,889,281 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014108005   ⟹   XP_013963480
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1236,813,663 - 36,836,941 (-)NCBI
Dog10K_Boxer_Tasha233,863,495 - 33,889,885 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038469678   ⟹   XP_038325606
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1234,340,392 - 34,366,182 (-)NCBI
RefSeq Acc Id: XM_038469679   ⟹   XP_038325607
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1234,340,392 - 34,364,003 (-)NCBI
RefSeq Acc Id: XM_038469680   ⟹   XP_038325608
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1234,340,392 - 34,366,791 (-)NCBI
RefSeq Acc Id: XM_038469681   ⟹   XP_038325609
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1234,343,960 - 34,366,182 (-)NCBI
RefSeq Acc Id: XM_038530453   ⟹   XP_038386381
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0235,959,180 - 35,984,806 (-)NCBI
RefSeq Acc Id: XM_038530455   ⟹   XP_038386383
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0235,959,180 - 35,982,613 (-)NCBI
RefSeq Acc Id: XM_038530456   ⟹   XP_038386384
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0235,959,180 - 35,985,407 (-)NCBI
RefSeq Acc Id: XM_038530457   ⟹   XP_038386385
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0235,962,753 - 35,984,806 (-)NCBI
RefSeq Acc Id: XM_038594689   ⟹   XP_038450617
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0235,151,686 - 35,177,301 (-)NCBI
RefSeq Acc Id: XM_038594690   ⟹   XP_038450618
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0235,151,686 - 35,175,109 (-)NCBI
RefSeq Acc Id: XM_038594691   ⟹   XP_038450619
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0235,151,686 - 35,177,896 (-)NCBI
RefSeq Acc Id: XM_038594692   ⟹   XP_038450620
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0235,155,258 - 35,177,301 (-)NCBI
RefSeq Acc Id: XM_038658740   ⟹   XP_038514668
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0237,265,925 - 37,291,552 (-)NCBI
RefSeq Acc Id: XM_038658741   ⟹   XP_038514669
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0237,265,925 - 37,289,360 (-)NCBI
RefSeq Acc Id: XM_038658742   ⟹   XP_038514670
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0237,265,925 - 37,292,153 (-)NCBI
RefSeq Acc Id: XM_038658743   ⟹   XP_038514671
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0237,269,498 - 37,291,552 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003638961 (Get FASTA)   NCBI Sequence Viewer  
  XP_005617369 (Get FASTA)   NCBI Sequence Viewer  
  XP_005617370 (Get FASTA)   NCBI Sequence Viewer  
  XP_013963480 (Get FASTA)   NCBI Sequence Viewer  
  XP_038325606 (Get FASTA)   NCBI Sequence Viewer  
  XP_038325607 (Get FASTA)   NCBI Sequence Viewer  
  XP_038325608 (Get FASTA)   NCBI Sequence Viewer  
  XP_038325609 (Get FASTA)   NCBI Sequence Viewer  
  XP_038386381 (Get FASTA)   NCBI Sequence Viewer  
  XP_038386383 (Get FASTA)   NCBI Sequence Viewer  
  XP_038386384 (Get FASTA)   NCBI Sequence Viewer  
  XP_038386385 (Get FASTA)   NCBI Sequence Viewer  
  XP_038450617 (Get FASTA)   NCBI Sequence Viewer  
  XP_038450618 (Get FASTA)   NCBI Sequence Viewer  
  XP_038450619 (Get FASTA)   NCBI Sequence Viewer  
  XP_038450620 (Get FASTA)   NCBI Sequence Viewer  
  XP_038514668 (Get FASTA)   NCBI Sequence Viewer  
  XP_038514669 (Get FASTA)   NCBI Sequence Viewer  
  XP_038514670 (Get FASTA)   NCBI Sequence Viewer  
  XP_038514671 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000047652.1
  ENSCAFP00000053144.2
  ENSCAFP00030004030.1
  ENSCAFP00030004046.1
  ENSCAFP00030004065.1
  ENSCAFP00030004077.1
  ENSCAFP00040009822.1
  ENSCAFP00040009841.1
  ENSCAFP00040009860.1
  ENSCAFP00040009889.1
  ENSCAFP00845023715
  ENSCAFP00845023715.1
  ENSCAFP00845023732.1
Reference Protein Sequences
RefSeq Acc Id: XP_013963480   ⟸   XM_014108005
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LZG4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003638961   ⟸   XM_003638913
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RYU1 (UniProtKB/TrEMBL),   A0A8I3P9T9 (UniProtKB/TrEMBL),   A0A8C0LZG4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005617369   ⟸   XM_005617312
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LZG4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005617370   ⟸   XM_005617313
- Peptide Label: isoform X3
- UniProtKB: A0A8C0M548 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000061387   ⟸   ENSCAFT00000077139
RefSeq Acc Id: ENSCAFP00000009335   ⟸   ENSCAFT00000010064
RefSeq Acc Id: ENSCAFP00000047652   ⟸   ENSCAFT00000090468
RefSeq Acc Id: ENSCAFP00000054743   ⟸   ENSCAFT00000085835
RefSeq Acc Id: ENSCAFP00000053144   ⟸   ENSCAFT00000071847
RefSeq Acc Id: XP_038325608   ⟸   XM_038469680
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038325606   ⟸   XM_038469678
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038325607   ⟸   XM_038469679
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038325609   ⟸   XM_038469681
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038450619   ⟸   XM_038594691
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038450617   ⟸   XM_038594689
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038450618   ⟸   XM_038594690
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038450620   ⟸   XM_038594692
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038514670   ⟸   XM_038658742
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LZG4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038514668   ⟸   XM_038658740
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RYU1 (UniProtKB/TrEMBL),   A0A8I3P9T9 (UniProtKB/TrEMBL),   A0A8C0LZG4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038514669   ⟸   XM_038658741
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LZG4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038514671   ⟸   XM_038658743
- Peptide Label: isoform X3
- UniProtKB: A0A8C0M548 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038386384   ⟸   XM_038530456
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LZG4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038386381   ⟸   XM_038530453
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LZG4 (UniProtKB/TrEMBL),   A0A8C0RYU1 (UniProtKB/TrEMBL),   A0A8I3P9T9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038386383   ⟸   XM_038530455
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LZG4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038386385   ⟸   XM_038530457
- Peptide Label: isoform X3
- UniProtKB: A0A8C0M548 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845023715   ⟸   ENSCAFT00845030243
RefSeq Acc Id: ENSCAFP00845023732   ⟸   ENSCAFT00845030266
Protein Domains
Cadherin

Promoters
RGD ID:13682459
Promoter ID:EPDNEW_C527
Type:single initiation site
Name:PCDH1_1
Description:protocadherin 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1236,836,432 - 36,836,492EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000006229 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030002456 UniProtKB/TrEMBL
  ENSCAFG00040006071 UniProtKB/TrEMBL
  ENSCAFG00845017072 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000071847.2 UniProtKB/TrEMBL
  ENSCAFT00000090468.2 UniProtKB/TrEMBL
  ENSCAFT00030004547.1 UniProtKB/TrEMBL
  ENSCAFT00030004566.1 UniProtKB/TrEMBL
  ENSCAFT00030004585.1 UniProtKB/TrEMBL
  ENSCAFT00030004598.1 UniProtKB/TrEMBL
  ENSCAFT00040011339.1 UniProtKB/TrEMBL
  ENSCAFT00040011362.1 UniProtKB/TrEMBL
  ENSCAFT00040011380.1 UniProtKB/TrEMBL
  ENSCAFT00040011410.1 UniProtKB/TrEMBL
  ENSCAFT00845030243 ENTREZGENE
  ENSCAFT00845030243.1 UniProtKB/TrEMBL
  ENSCAFT00845030266.1 UniProtKB/TrEMBL
Gene3D-CATH Cadherins UniProtKB/TrEMBL
InterPro Cadherin-like_dom UniProtKB/TrEMBL
  Cadherin-like_sf UniProtKB/TrEMBL
  Cadherin_CS UniProtKB/TrEMBL
  Cadherin_N UniProtKB/TrEMBL
  Protocadherin UniProtKB/TrEMBL
KEGG Report cfa:100856703 UniProtKB/TrEMBL
NCBI Gene PCDH1 ENTREZGENE
PANTHER CADHERIN-87A UniProtKB/TrEMBL
  PROTOCADHERIN-1 UniProtKB/TrEMBL
Pfam Cadherin UniProtKB/TrEMBL
  Cadherin_2 UniProtKB/TrEMBL
  Protocadherin UniProtKB/TrEMBL
PRINTS CADHERIN UniProtKB/TrEMBL
PROSITE CADHERIN_1 UniProtKB/TrEMBL
  CADHERIN_2 UniProtKB/TrEMBL
SMART SM00112 UniProtKB/TrEMBL
Superfamily-SCOP SSF49313 UniProtKB/TrEMBL
UniProt A0A8C0LZG4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0M548 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0QBR0_CANLF UniProtKB/TrEMBL
  A0A8C0RYU1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3P708_CANLF UniProtKB/TrEMBL
  A0A8I3P9T9 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:44294 ENTREZGENE