IL29L (interleukin 29-like) - Rat Genome Database

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Gene: IL29L (interleukin 29-like) Canis lupus familiaris
Analyze
Symbol: IL29L
Name: interleukin 29-like
RGD ID: 12352405
Description: ENCODES a protein that exhibits interleukin-28 receptor binding (ortholog); INVOLVED IN negative regulation of cell population proliferation (ortholog); negative regulation of DNA-templated transcription (ortholog); negative regulation of interleukin-13 production (ortholog); ASSOCIATED WITH asthma (ortholog); Chronic Hepatitis B (ortholog); Chronic Hepatitis C (ortholog); FOUND IN interleukin-28 receptor complex (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: interferon lambda
RGD Orthologs
Human
Rat
Bonobo
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12436,440,445 - 36,441,017 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2436,440,445 - 36,441,017 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2435,681,783 - 35,682,355 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02437,144,224 - 37,144,796 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2437,144,224 - 37,144,796 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12436,385,609 - 36,386,181 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02436,518,941 - 36,519,513 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02437,062,250 - 37,062,822 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
IL29L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12436,440,445 - 36,441,017 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2436,440,445 - 36,441,017 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2435,681,783 - 35,682,355 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02437,144,224 - 37,144,796 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2437,144,224 - 37,144,796 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12436,385,609 - 36,386,181 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02436,518,941 - 36,519,513 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02437,062,250 - 37,062,822 (+)NCBIUU_Cfam_GSD_1.0
IFNL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381939,296,407 - 39,298,673 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1939,296,407 - 39,298,673 (+)EnsemblGRCh38hg38GRCh38
GRCh371939,787,047 - 39,789,313 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361944,478,805 - 44,481,152 (+)NCBINCBI36Build 36hg18NCBI36
Build 341944,478,804 - 44,481,152NCBI
Celera1936,588,638 - 36,590,984 (+)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1936,233,484 - 36,235,831 (+)NCBIHuRef
CHM1_11939,787,771 - 39,790,118 (+)NCBICHM1_1
T2T-CHM13v2.01942,100,680 - 42,102,942 (+)NCBIT2T-CHM13v2.0
Ifnl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8192,926,184 - 92,927,830 (-)NCBIGRCr8
mRatBN7.2183,798,651 - 83,800,297 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl183,798,703 - 83,800,235 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0185,252,103 - 85,253,635 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl185,252,103 - 85,253,635 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0186,468,148 - 86,469,680 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Cytogenetic Map1q21NCBI
LOC100976419
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22045,591,601 - 45,602,115 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11947,462,219 - 47,472,684 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01936,394,462 - 36,397,363 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11944,942,186 - 44,944,519 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1944,942,186 - 44,944,519 (+)Ensemblpanpan1.1panPan2
IL29
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1751,484,658 - 51,485,233 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11751,484,658 - 51,485,233 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LOC103234663
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1633,901,382 - 33,904,356 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl633,901,801 - 33,903,894 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607311,921,937 - 11,924,341 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in IL29L
12 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
3 1 14 10 8 3 6 13 10 5 10 8

Sequence


Ensembl Acc Id: ENSCAFT00000018214   ⟹   ENSCAFP00000016866
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2436,440,445 - 36,441,017 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845045501   ⟹   ENSCAFP00845035691
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2437,144,224 - 37,144,796 (+)Ensembl
RefSeq Acc Id: NM_001114853   ⟹   NP_001108325
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12436,440,445 - 36,441,017 (+)NCBI
Dog10K_Boxer_Tasha2435,681,783 - 35,682,355 (+)NCBI
ROS_Cfam_1.02437,144,224 - 37,144,796 (+)NCBI
UMICH_Zoey_3.12436,385,609 - 36,386,181 (+)NCBI
UNSW_CanFamBas_1.02436,518,941 - 36,519,513 (+)NCBI
UU_Cfam_GSD_1.02437,062,250 - 37,062,822 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001108325 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AGN92945 (Get FASTA)   NCBI Sequence Viewer  
  BAE94318 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000016866.3
  ENSCAFP00030038223.1
  ENSCAFP00040017382.1
  ENSCAFP00845035691
  ENSCAFP00845035691.1
RefSeq Acc Id: NP_001108325   ⟸   NM_001114853
- Peptide Label: precursor
- UniProtKB: A0A7R8GV11 (UniProtKB/TrEMBL),   A0A8P0SG82 (UniProtKB/TrEMBL),   F1PY54 (UniProtKB/TrEMBL),   Q1JUL3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000016866   ⟸   ENSCAFT00000018214
Ensembl Acc Id: ENSCAFP00845035691   ⟸   ENSCAFT00845045501


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000011481 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030023813 UniProtKB/TrEMBL
  ENSCAFG00040010851 UniProtKB/TrEMBL
  ENSCAFG00845025792 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000018214.4 UniProtKB/TrEMBL
  ENSCAFT00030043792.1 UniProtKB/TrEMBL
  ENSCAFT00040020037.1 UniProtKB/TrEMBL
  ENSCAFT00845045501 ENTREZGENE
  ENSCAFT00845045501.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.60 UniProtKB/TrEMBL
InterPro IFN-lambda_sf UniProtKB/TrEMBL
  INF_lambda UniProtKB/TrEMBL
KEGG Report cfa:611377 UniProtKB/TrEMBL
NCBI Gene IL29L ENTREZGENE
PANTHER INTERFERON LAMBDA-1 UniProtKB/TrEMBL
  PTHR31943 UniProtKB/TrEMBL
Pfam IL28A UniProtKB/TrEMBL
UniProt A0A7R8GV11 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0PPV5_CANLF UniProtKB/TrEMBL
  A0A8C0S8I0_CANLF UniProtKB/TrEMBL
  A0A8I3Q7V8_CANLF UniProtKB/TrEMBL
  A0A8P0SG82 ENTREZGENE, UniProtKB/TrEMBL
  F1PY54 ENTREZGENE
  Q1JUL3 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F1PY54 UniProtKB/TrEMBL