EFNB2 (ephrin B2) - Rat Genome Database

Name: EFNB2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: EFNB2 (ephrin B2) Canis lupus familiaris

Analyze

Symbol:

EFNB2

Name:

ephrin B2

RGD ID:

12349983

Description:

ENCODES a protein that exhibits ephrin receptor binding (inferred); signaling receptor binding (inferred); INVOLVED IN animal organ morphogenesis (ortholog); blood vessel morphogenesis (ortholog); cellular response to lipopolysaccharide (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); colon carcinoma (ortholog); colorectal carcinoma (ortholog); FOUND IN dendrite (ortholog); glutamatergic synapse (ortholog); postsynaptic density membrane (ortholog)

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

ephrin-B2

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	EFNB2 (ephrin B2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther
Mus musculus (house mouse):	Efnb2 (ephrin B2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Efnb2 (ephrin B2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Efnb2 (ephrin B2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	EFNB2 (ephrin B2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Efnb2 (ephrin B2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	EFNB2 (ephrin B2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	EFNB2 (ephrin B2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Efnb2 (ephrin B2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	22	55,567,992 - 55,609,210 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	22	55,566,039 - 55,609,443 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	22	55,325,721 - 55,366,922 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	22	56,079,969 - 56,121,281 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	22	56,078,458 - 56,121,514 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	22	55,672,831 - 55,714,054 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	22	55,659,581 - 55,700,849 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	22	55,698,309 - 55,739,598 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Anal Atresia, Hypospadias, and Penoscrotal Inversion (ISO)

colon carcinoma (ISO)

colorectal carcinoma (ISO)

esophagus squamous cell carcinoma (ISO)

Focal Nodular Hyperplasia (ISO)

genetic disease (ISO)

irritable bowel syndrome (ISO)

Liver Neoplasms (ISO)

Lung Agenesis (ISO)

Lung Neoplasms (ISO)

nasopharynx carcinoma (ISO)

Neoplasm Metastasis (ISO)

oral squamous cell carcinoma (ISO)

Oxygen-Induced Retinopathy (ISO)

pre-malignant neoplasm (ISO)

Reperfusion Injury (ISO)

Spinal Cord Injuries (ISO)

stomach cancer (ISO)

varicose veins (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adherens junction organization (IEA)

animal organ morphogenesis (IEA,ISO)

axon guidance (IEA)

blood vessel morphogenesis (IEA,ISO)

cell adhesion (IEA)

cell differentiation (IEA)

cell migration involved in sprouting angiogenesis (IEA)

cellular response to lipopolysaccharide (ISO)

ephrin receptor signaling pathway (IEA)

keratinocyte proliferation (IEA,ISO)

lymph vessel development (IEA,ISO)

negative regulation of keratinocyte proliferation (IEA,ISO)

negative regulation of neuron projection development (IEA)

nephric duct morphogenesis (IEA,ISO)

nervous system development (IEA)

positive regulation of aorta morphogenesis (IEA,ISO)

positive regulation of cardiac muscle cell differentiation (IEA)

positive regulation of cell population proliferation (IEA)

presynapse assembly (ISO)

regulation of chemotaxis (IEA)

regulation of postsynaptic membrane neurotransmitter receptor levels (IEA)

regulation of postsynaptic neurotransmitter receptor internalization (IEA)

T cell costimulation (IEA,ISO)

venous blood vessel morphogenesis (IEA,ISO)

Cellular Component

dendrite (ISO)

glutamatergic synapse (IEA,ISO)

membrane (IEA)

plasma membrane (IEA)

postsynaptic density membrane (IEA,ISO)

presynaptic membrane (ISO)

Schaffer collateral - CA1 synapse (IEA,ISO)

Molecular Function

ephrin receptor binding (IEA)

protein binding (ISO)

signaling receptor binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

ephrin - ephrin receptor bidirectional signaling axis (ISO)

References

Additional References at PubMed

PMID:18054977	PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

EFNB2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	22	55,567,992 - 55,609,210 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	22	55,566,039 - 55,609,443 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	22	55,325,721 - 55,366,922 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	22	56,079,969 - 56,121,281 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	22	56,078,458 - 56,121,514 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	22	55,672,831 - 55,714,054 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	22	55,659,581 - 55,700,849 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	22	55,698,309 - 55,739,598 (-)	NCBI		UU_Cfam_GSD_1.0

EFNB2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	106,489,745 - 106,535,662 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	106,489,745 - 106,535,662 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	13	107,142,093 - 107,188,010 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	105,940,094 - 105,985,338 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	13	105,940,097 - 105,985,338	NCBI
Celera	13	87,986,327 - 88,031,570 (-)	NCBI		Celera
Cytogenetic Map	13	q33.3	NCBI
HuRef	13	87,733,581 - 87,778,804 (-)	NCBI		HuRef
CHM1_1	13	107,110,751 - 107,156,066 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	13	105,710,156 - 105,756,072 (-)	NCBI		T2T-CHM13v2.0

Efnb2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	8,667,235 - 8,711,242 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	8,667,434 - 8,711,242 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	8,617,235 - 8,661,242 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	8,617,434 - 8,661,242 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	8,617,439 - 8,660,773 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	8,617,406 - 8,660,745 (-)	NCBI		MGSCv36	mm8
Celera	8	8,790,063 - 8,833,410 (-)	NCBI		Celera
Cytogenetic Map	8	A1.1	NCBI
cM Map	8	3.42	NCBI

Efnb2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	87,485,215 - 87,529,224 (+)	NCBI		GRCr8
mRatBN7.2	16	80,783,389 - 80,827,420 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	80,783,417 - 80,824,391 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	86,062,447 - 86,103,384 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	89,515,058 - 89,556,010 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	84,759,477 - 84,800,448 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	86,631,151 - 86,672,050 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	86,631,064 - 86,675,049 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	86,044,304 - 86,085,652 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	86,187,639 - 86,228,023 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	86,173,265 - 86,214,062 (+)	NCBI
Celera	16	78,561,525 - 78,602,409 (+)	NCBI		Celera
Cytogenetic Map	16	q12.5	NCBI

Efnb2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955404	5,000,906 - 5,030,126 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955404	5,000,906 - 5,030,068 (+)	NCBI	ChiLan1.0	ChiLan1.0

EFNB2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	107,986,859 - 108,032,680 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	106,667,225 - 106,713,015 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	87,629,831 - 87,675,652 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	13	106,770,296 - 106,815,542 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	13	106,770,296 - 106,815,548 (-)	Ensembl	panpan1.1		panPan2

Efnb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	190,770,785 - 190,813,404 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936472	5,138,745 - 5,181,668 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936472	5,138,751 - 5,181,630 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

EFNB2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	74,186,640 - 74,233,354 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	11	74,188,337 - 74,232,768 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	81,565,082 - 81,609,512 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

EFNB2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	84,904,421 - 84,949,292 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	3	84,904,435 - 84,949,465 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666046	41,467,321 - 41,512,883 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Efnb2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624793	5,089,639 - 5,130,503 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624793	5,089,675 - 5,130,022 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in EFNB2
493 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium	5	2	7		5		6		10	7	8	3
Low		3	15	6	1	6		6	2	1	2	3
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001114296	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EF682139	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000254	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000060	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000360	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000009711 ⟹ ENSCAFP00000009014

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	22	55,566,248 - 55,609,443 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000081518 ⟹ ENSCAFP00000053322

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	22	55,566,039 - 55,609,443 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000092831 ⟹ ENSCAFP00000052146

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	22	55,566,039 - 55,609,443 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845049407 ⟹ ENSCAFP00845038767

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	22	56,078,458 - 56,121,514 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845049453 ⟹ ENSCAFP00845038802

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	22	56,078,458 - 56,121,514 (-)	Ensembl

RefSeq Acc Id:

NM_001114296 ⟹ NP_001107768

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	22	55,567,992 - 55,609,210 (-)	NCBI
Dog10K_Boxer_Tasha	22	55,325,721 - 55,366,922 (-)	NCBI
ROS_Cfam_1.0	22	56,079,969 - 56,121,281 (-)	NCBI
UMICH_Zoey_3.1	22	55,672,831 - 55,714,054 (-)	NCBI
UNSW_CanFamBas_1.0	22	55,659,581 - 55,700,849 (-)	NCBI
UU_Cfam_GSD_1.0	22	55,698,309 - 55,739,598 (-)	NCBI

Sequence:

show sequence

ATGGCCGCGAGGAGGGACTCCGTGTGGAAGTACTGCTGGGGAGTTTTGATGGTTTTATGCAGAA
CTGCGATTTCCAGGTCGATAGTTTTAGAGCCCATCTACTGGAATTCCTCCAACTCCAAATTTCT
ACCTGGACAAGGACTGGTACTATATCCACAGATAGGAGACAAATTGGATATTATTTGCCCCAAA
GTGGACTCTAAAACTGTTGGCCAGTATGAATATTATAAAGTTTATATGGTTGATAAAGACCAAG
CAGACCGATGTACTATTAAGAAAGAAAACACCCCTCTTCTCAACTGTGCCAGACCAGACCAAGA
TGTAAAATTCACTATCAAGTTTCAAGAGTTCAGCCCTAACCTCTGGGGTTTAGAATTTCAGAAG
AACAGAGATTATTACATTATATCTACATCAAATGGGTCTTTGGAGGGCCTGGATAACCAGGAGG
GAGGGGTGTGCCAGACAAGAGCCATGAAGATCCTCATGAAAGTTGGACAAGATGCAAGTTCCGC
TGGGTCAGCCAGGCATAATGATCCAACACGACGCCCAGAACTAGAAGCCGGTACAAATGGAAGA
AGTTCAACAACAAGTCCCTTTGTCAAACCAAATCCAGGTTCCAGCACCGACGGCAGCAGTGCCG
GACATTCCGGGAACAATATCCTGGGTTCCGAAGTGGCCTTATTCGCAGGGATTGCTTCAGGATG
CATCATCTTCATCGTCATCATCATCACGCTGGTAGTGCTCCTGCTCAAGTACCGGCGGAGACAC
CGGAAGCACTCACCGCAGCACACGGCCACCCTGTCACTCAGCACGCTGGCCACGCCCAAGCGCG
GTGGCAACAACAATGGCTCCGAGCCCAGTGACATTATCATCCCGCTGCGGACTGCGGACAGTGT
GTTCTGTCCCCACTACGAGAAGGTCAGCGGGGACTACGGGCACCCAGTGTACATAGTCCAGGAG
ATGCCTCCCCAGAGCCCAGCCAACATTTACTACAAGGTCTGA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001107768	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	ABV44487	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000052146.2
	ENSCAFP00000053322.2
	ENSCAFP00030006574.1
	ENSCAFP00040041055.1
	ENSCAFP00040041060.1
	ENSCAFP00845038767
	ENSCAFP00845038767.1
	ENSCAFP00845038802.1

RefSeq Acc Id:

NP_001107768 ⟸ NM_001114296

- UniProtKB:

B0LDS6 (UniProtKB/TrEMBL), A0A8C0M8W9 (UniProtKB/TrEMBL), A0A8C0L9F2 (UniProtKB/TrEMBL), A0A8C0TVQ6 (UniProtKB/TrEMBL), A0A8I3Q2K7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAARRDSVWKYCWGVLMVLCRTAISRSIVLEPIYWNSSNSKFLPGQGLVLYPQIGDKLDIICPK
VDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQK
NRDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDASSAGSARHNDPTRRPELEAGTNGR
SSTTSPFVKPNPGSSTDGSSAGHSGNNILGSEVALFAGIASGCIIFIVIIITLVVLLLKYRRRH
RKHSPQHTATLSLSTLATPKRGGNNNGSEPSDIIIPLRTADSVFCPHYEKVSGDYGHPVYIVQE
MPPQSPANIYYKV

hide sequence

RefSeq Acc Id:

ENSCAFP00000052146 ⟸ ENSCAFT00000092831

RefSeq Acc Id:

ENSCAFP00000009014 ⟸ ENSCAFT00000009711

RefSeq Acc Id:

ENSCAFP00000053322 ⟸ ENSCAFT00000081518

RefSeq Acc Id:

ENSCAFP00845038802 ⟸ ENSCAFT00845049453

RefSeq Acc Id:

ENSCAFP00845038767 ⟸ ENSCAFT00845049407

Protein Domains

Ephrin RBD

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000006022	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030004071	UniProtKB/TrEMBL
	ENSCAFG00040025221	UniProtKB/TrEMBL
	ENSCAFG00845027992	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000081518.2	UniProtKB/TrEMBL
	ENSCAFT00000092831.2	UniProtKB/TrEMBL
	ENSCAFT00030007501.1	UniProtKB/TrEMBL
	ENSCAFT00040047029.1	UniProtKB/TrEMBL
	ENSCAFT00040047036.1	UniProtKB/TrEMBL
	ENSCAFT00845049407	ENTREZGENE
	ENSCAFT00845049407.1	UniProtKB/TrEMBL
	ENSCAFT00845049453.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.420	UniProtKB/TrEMBL
InterPro	Cupredoxin	UniProtKB/TrEMBL
	Ephrin	UniProtKB/TrEMBL
	Ephrin-B_Ecto	UniProtKB/TrEMBL
	Ephrin_CS	UniProtKB/TrEMBL
	Ephrin_RBD	UniProtKB/TrEMBL
KEGG Report	cfa:611745	UniProtKB/TrEMBL
NCBI Gene	EFNB2	ENTREZGENE
PANTHER	EPHRIN-B2	UniProtKB/TrEMBL
	PTHR11304	UniProtKB/TrEMBL
Pfam	Ephrin	UniProtKB/TrEMBL
PRINTS	EPHRIN	UniProtKB/TrEMBL
PROSITE	EPHRIN_RBD_1	UniProtKB/TrEMBL
	EPHRIN_RBD_2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49503	UniProtKB/TrEMBL
UniProt	A0A8C0L9F2	ENTREZGENE
	A0A8C0M8W9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0TVQ6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3Q2K7	ENTREZGENE, UniProtKB/TrEMBL
	B0LDS6	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:40229	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - PID (archival)