ARL13B (ADP ribosylation factor like GTPase 13B)

Gene: ARL13B (ADP ribosylation factor like GTPase 13B) Canis lupus familiaris

Analyze

Symbol:

ARL13B

Name:

ADP ribosylation factor like GTPase 13B

RGD ID:

12348274

Description:

ENCODES a protein that exhibits GTP binding (inferred); GTPase activity (inferred); INVOLVED IN determination of left/right symmetry (ortholog); dorsal/ventral pattern formation (ortholog); heart looping (ortholog); ASSOCIATED WITH autosomal recessive thrombophilia due to protein S deficiency (ortholog); cystic kidney disease (ortholog); genetic disease (ortholog); FOUND IN axoneme (inferred); ciliary membrane (inferred); cilium (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

ADP-ribosylation factor-like protein 13B

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	33	1,698,360 - 1,762,846 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	33	1,698,363 - 1,761,641 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	33	1,878,107 - 1,942,635 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	33	1,798,026 - 1,862,534 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	33	1,798,051 - 1,862,531 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	33	1,707,188 - 1,771,378 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	33	1,742,070 - 1,806,566 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	33	1,967,145 - 2,031,460 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal recessive thrombophilia due to protein S deficiency (ISO)

cystic kidney disease (ISO)

genetic disease (ISO)

Joubert syndrome (ISO)

Joubert syndrome 1 (ISO)

Joubert syndrome 8 (ISO)

long QT syndrome (ISO)

neural tube defect (ISO)

obesity (ISO)

protein S deficiency (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cilium assembly (IEA)

determination of left/right symmetry (IEA,ISO)

dorsal/ventral pattern formation (IEA,ISO)

formation of radial glial scaffolds (IEA)

heart looping (IEA,ISO)

interneuron migration from the subpallium to the cortex (IEA)

left/right axis specification (IEA,ISO)

neural tube patterning (IEA)

non-motile cilium assembly (IEA)

receptor localization to non-motile cilium (IEA)

smoothened signaling pathway (IEA)

Cellular Component

axoneme (IEA)

ciliary membrane (IEA)

cilium (IEA)

membrane (IEA)

motile cilium (IEA)

non-motile cilium (IEA)

Molecular Function

GTP binding (IEA)

GTPase activity (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

ARL13B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	33	1,698,360 - 1,762,846 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	33	1,698,363 - 1,761,641 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	33	1,878,107 - 1,942,635 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	33	1,798,026 - 1,862,534 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	33	1,798,051 - 1,862,531 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	33	1,707,188 - 1,771,378 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	33	1,742,070 - 1,806,566 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	33	1,967,145 - 2,031,460 (+)	NCBI		UU_Cfam_GSD_1.0

ARL13B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	93,980,155 - 94,055,678 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	93,980,139 - 94,055,678 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	93,698,999 - 93,774,522 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	95,181,672 - 95,256,813 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	95,181,671 - 95,256,811	NCBI
Celera	3	92,082,477 - 92,158,408 (+)	NCBI		Celera
Cytogenetic Map	3	q11.1-q11.2	NCBI
HuRef	3	91,061,683 - 91,137,139 (+)	NCBI		HuRef
CHM1_1	3	93,662,067 - 93,737,527 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	96,678,283 - 96,754,130 (+)	NCBI		T2T-CHM13v2.0

Arl13b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	62,613,671 - 62,667,418 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	62,614,048 - 62,667,403 (-)	Ensembl		GRCm39 Ensembl
GRCm38	16	62,793,308 - 62,847,055 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	62,793,685 - 62,847,040 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	62,793,515 - 62,846,866 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	62,735,945 - 62,789,253 (-)	NCBI		MGSCv36	mm8
Celera	16	63,102,388 - 63,155,607 (-)	NCBI		Celera
Cytogenetic Map	16	C1.3	NCBI
cM Map	16	36.43	NCBI

Arl13b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	13,597,538 - 13,663,681 (-)	NCBI		GRCr8
mRatBN7.2	11	150,100 - 217,103 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	150,955 - 217,197 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	8,747,109 - 8,813,116 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	1,540,368 - 1,606,375 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	645,150 - 711,155 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	1,122,567 - 1,188,209 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	1,122,567 - 1,188,209 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	1,111,829 - 1,181,765 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	13	160,428 - 223,413 (-)	NCBI		Celera
Cytogenetic Map	11	p12	NCBI

Arl13b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955407	3,402,908 - 3,460,105 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955407	3,402,214 - 3,477,839 (-)	NCBI	ChiLan1.0	ChiLan1.0

ARL13B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	91,890,580 - 91,972,922 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	91,895,366 - 91,974,311 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	91,044,332 - 91,121,686 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	97,725,136 - 97,799,932 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	97,725,136 - 97,799,932 (+)	Ensembl	panpan1.1		panPan2

Arl13b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	155,334,820 - 155,399,714 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936666	116,264 - 177,989 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936666	115,964 - 179,639 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ARL13B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	165,828,059 - 165,910,961 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	165,829,772 - 165,910,959 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

ARL13B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	86,648,924 - 86,722,006 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	86,651,076 - 86,721,948 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	79,960,967 - 80,033,874 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Arl13b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624789	6,710,681 - 6,783,667 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624789	6,710,858 - 6,783,097 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in ARL13B
704 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium			11						6		3
Low	5	5	11	6	6	6	6	6	6	8	7	6
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005639340	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005639344	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022413740	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038444648	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038444649	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038444650	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038462318	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038518988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038518989	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038518990	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038582504	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038582505	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038582506	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038646932	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038646933	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038646934	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000332	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000078	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000367	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000014341 ⟹ ENSCAFP00000013262

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	33	1,698,363 - 1,761,641 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00000066011 ⟹ ENSCAFP00000054719

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	33	1,698,363 - 1,761,641 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00000066751 ⟹ ENSCAFP00000065898

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	33	1,698,363 - 1,761,641 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845054325 ⟹ ENSCAFP00845042685

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	33	1,798,051 - 1,862,531 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845054336 ⟹ ENSCAFP00845042694

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	33	1,798,051 - 1,861,327 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845054355 ⟹ ENSCAFP00845042708

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	33	1,798,283 - 1,862,531 (+)	Ensembl

RefSeq Acc Id:

XM_005639344 ⟹ XP_005639401

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	33	1,698,360 - 1,762,846 (+)	NCBI
Dog10K_Boxer_Tasha	33	1,878,107 - 1,942,635 (+)	NCBI

Sequence:

show sequence

CTCCGCTCGCCCGGCTGGGAAAGGTGACTCTTGTGATGGTGGGACTTGATAATGCTGGTAAAAC
GGCAACGGCAAAGGGAATCCAAGGAGAGTATCCTGAAGATGTAGCTCCTACTGTTGGATTTTCC
AAAATCGACCTTAGGCAAGGAAAGTTTGAAGTCACCATCTTTGACTTGGGAGGTGGAAAAAGAA
TTCGGGGAATCTGGAAGAATTATTATGCTGAAGCCTATGGGGTAATATTTGTTGTGGATTCCAG
TGATGAAGAGAGAATGGAAGAGACAAAAGAGACAATGTCAGAAGTGCTGAGACATCCTAGGATA
TCGGGAAAGCCTATATTGGTGTTGGCAAATAAACAAGACAAGGAAGGGGCTTTAGGAGAAGCTG
ATGTGATTGAATGCCTATCTCTGGAAAAATTAGTCAATGAGCACAAGTGCCTATGTCAAATAGA
ACCTTGTTCAGCAGTCTTGGGCTATGGAAAGAAAATTGACAAGTCCATTAAAAAAGGTCTTTAC
TGGCTGCTACATATCATTGCAAGAGACTTTGATACCTTAAATGAACGCATCCAAAGGGATATAA
CAGAACAGCGTGCTCTTGAAGAACAAGAGAAACGAGAAAGGGCTGAACGAGTGCGAAAATTACG
AGAAGAGAGAGAACAAAGGGAGCGAGAACAAGCGGAACTGAATGGAAGCAGCAGCCTGGCTGAG
TTGGACCCCGAACCAATTACTGTTAATCCTTTCCAGCCAATAGCATCTGTCATTCTTGAGAATG
AAAGAAAACTTGAAAAAGAGAAAAGGAGACAGAATATGGAGAAAGACAGTGATGGCCGTCCCCT
GAAACATAAAGTGGAGCATGAGCAAATAGAGACACAGAGCCAGATCAGTGATAGTAGCCAAAAA
ACCAATGAGCTTGGAGTAGTAGAAAATTACAAGGAGGCTTTAACACAGCAGTTGGAGAATGAAG
ATGAGACAGACCAGCGATCATCAGAATCAGATAATAGTAAAAAGAAAACTAAGAAACTAAGAAT
AAAAAGGAGTCACCGTGTAGAACCTGTTAATACAGATGACTCTGCTCCTAAGAGTCCAACACCA
CCCCCACCTCCTCCTCCTGTTGGCTGGGGAACCCTTAAAGTCACTAGACTTCCAAAACTTGAGC
CTCTTGGTGAAACACGTCATAATGATTTCTATGGAAAGCCACTGCCTCCCCTGGCTGTGCAACA
GAGACCTAACAGTGATGCTCATGATGTGATTTCATAACCAAGTCGCATGGATGCACTCTTCTAA
TATAGGCAAGATCCACTAGAGGATATTCTTTCTCAAAGAAGAAGAAAAACCCAAAACATTGATG
ACTGGGGCAAGATAACCATAGCATGATTTCAGTAAGGCGATGAATAGTCAAAGACCTGACTGAT
CTGACAACTATCCATGTTATTCATTTTTTTGTTGTTGTTTTTGTTTTTTTTAAAAAAAGGAAGC
AAAATGACCAGTAGATGGGATGAGGATTTGAATCAATTTAACAGGAGTTACCGTTGACTCTGGA
TTTTACAGTCCCACTCATGGGCATATTCCTGAAGGAAAGCCTTTTTACAAAAAGAGCTGATGGA
CTCCCTACTTTCTTTACTATTTGTTTAATAGTCTTTATTACTGTATCTTACATATTTTTTTTGT
AAGATATATGTGCATGGAAGGGGAACTCTTGGGAATTTATAACCTAAGTTTTTAACTTTTTATA
TTTTTCTACAACTTAAAAGAATTTTAATTACCATGATATTGACTGCACTTTTCTATAAATGGTT
TGTTTAAATTGTGTCTGGAAATGGAGTTGATTTACTTGACAAACATGAACTATACAAACAGGAT
GTATTTATATGGCTTCAGGTATGTTTTATAAGAGTATTGTCCTTGAATTATACATCTTAATTTT
ACTTAATTTTAAAATAATACCTTTTTAAAATAGGTTCTTAGATCTTTATTCTTCCAAATTATGT
TATCTGAAAACACTACCCAAGGAGGGCTCCATTTTTTTGTTGTTGTTTGCTTTTTTTTGGTGAT
CAGAATAAATGAAAGAGACTTGAAATACTTTCTTGATCTAAGTGCTTTTTAAATTAATTAAAAT
GTTATGTTGAGATATTGTTAAAATTCTCAATGAACACCTCTTTCATAGGATAGACCTTTTCAGA
TCTAGGTGCTCCTTGTCACTCTCATTCTATCAGAAGCCACAGTGGGTACAGAGACTTGTGTTTT
ATAATCAGATAATGCTTGGATACTCAGTCAATAAGAACAAAAATGTTGGTTTAAAATTACTTTT
ATAAGGAAATAAATCTAAAATAATTTCTCAATTTAAAAGAATAGCACTTCTCTTGCACTGAAGA
ATGTCATCTATAGGATTCTCTATTTAGGCAAACTTTGAGAAATATATTTTGAGTAATAGATTTA
TAATGTTGCATTTAACTGAAAGTATATACATTTATATCAAGGTGAAAATGCTATAAACAATATG
ACTCCTTTTCACTTTGTTAAAATTGGTAAGTTTGGTAACTTGTACTGACAACAAACATAACTAG
TATCTAACAATAACAAGATTAAGTATGTCTAAGACAGTTTAATATGATTGTTTATTTAAAAAAT
TTTACTTTGGTGCATCACATTTTAGTCACATTTTTTAAGTCCCTGAACTTTCCTTAATCAGGTC
GCTTATTACTCTAGTCAGCACCAGAATGCAGTTTCTTGAAATTCTGGGCATAGGACATCAGGGA
CACTGAGTAAAACACATTCTACTTCAGATATAAAATCATAACACCCTAAATTTGATAGGTGGCC
GAAATGTAACGAAGCCAACACAAGAAGATAGAATGTAAATTTTGAACTTAATTTTAGAGAAAAA
CTTGTTTGTGTATCTCTTTGGTTCCTTTGTGTAACATTTACACTTACTCATTTTTTTTTAAACA
CTAAACCTATACTCTTGTCATCTTTTTAATTTTCATCTAGTTTAAGAGTAAATAAAAGTCTAAA
ATTTTTTTATTTCCTATAAGTGATTACTATAGTAGACAATACTGTTCATTTATTAAAAATGAGT
AAAAATGATTTTGAAACTTAATATGATAAAGTAAATGTTTATATATTTCTCTCAAAATATTAAT
TTGTATTCTTAAAGCATTCTAAAAATATTTTAAAAGAAGTTTTGTAAATCCAGGTTGCTTTTAA
CAAGTAAATGCCTTTTTTGTCATATGCTGCATTTTTATTCTTAATCATCACAAATACTGACATT
TTCACACAATAAAAATAATATATATCAA

hide sequence

RefSeq Acc Id:

XM_022413740 ⟹ XP_022269448

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	33	1,713,164 - 1,762,846 (+)	NCBI
Dog10K_Boxer_Tasha	33	1,892,900 - 1,942,635 (+)	NCBI

Sequence:

show sequence

AAAGGTGACTCTTGTGATGGTGGGACTTGATAATGCTGGTAAAACGGCAACGGCAAAGGGAATC
CAAGGAGAGTATCCTGAAGATGTAGCTCCTACTGTTGGATTTTCCAAAATCGACCTTAGGCAAG
GAAAGTTTGAAGTCACCATCTTTGACTTGGGAGGTGGAAAAAGAATTCGGGGAATCTGGAAGAA
TTATTATGCTGAAGCCTATGGGGTAATATTTGTTGTGGATTCCAGTGATGAAGAGAGAATGGAA
GAGACAAAAGAGACAATGTCAGAAGTGCTGAGACATCCTAGGATATCGGGAAAGCCTATATTGG
TGTTGGCAAATAAACAAGACAAGGAAGGGGCTTTAGGAGAAGCTGATGTGATTGAATGCCTATC
TCTGGAAAAATTAGTCAATGAGCACAAGTGCCTATGTCAAATAGAACCTTGTTCAGCAGTCTTG
GGCTATGGAAAGAAAATTGACAAGTCCATTAAAAAAGGTCTTTACTGGCTGCTACATATCATTG
CAAGAGACTTTGATACCTTAAATGAACGCATCCAAAGGGATATAACAGAACAGCGTGCTCTTGA
AGAACAAGAGAAACGAGAAAGGGCTGAACGAGTGCGAAAATTACGAGAAGAGAGAGAACAAAGG
GAGCGAGAACAAGCGGAACTGAATGGAAGCAGCAGCCTGGCTGAGTTGGACCCCGAACCAATTA
CTGTTAATCCTTTCCAGCCAATAGCATCTGTCATTCTTGAGAATGAAAGAAAACTTGAAAAAGA
GAAAAGGAGACAGAATATGGAGAAAGACAGTGATGGCCGTCCCCTGAAACATAAAGTGGAGCAT
GAGCAAATAGAGACACAGAGCCAGATCAGTGATAGTAGCCAAAAAACCAATGAGCTTGGAGTAG
TAGAAAATTACAAGGAGGCTTTAACACAGCAGTTGGAGAATGAAGATGAGACAGACCAGCGATC
ATCAGAATCAGATAATAGTAAAAAGAAAACTAAGAAACTAAGAATAAAAAGGAGTCACCGTGTA
GAACCTGTTAATACAGATGACTCTGCTCCTAAGAGTCCAACACCACCCCCACCTCCTCCTCCTG
ATTTCTATGGAAAGCCACTGCCTCCCCTGGCTGTGCAACAGAGACCTAACAGTGATGCTCATGA
TGTGATTTCATAACCAAGTCGCATGGATGCACTCTTCTAATATAGGCAAGATCCACTAGAGGAT
ATTCTTTCTCAAAGAAGAAGAAAAACCCAAAACATTGATGACTGGGGCAAGATAACCATAGCAT
GATTTCAGTAAGGCGATGAATAGTCAAAGACCTGACTGATCTGACAACTATCCATGTTATTCAT
TTTTTTGTTGTTGTTTTTGTTTTTTTTAAAAAAAGGAAGCAAAATGACCAGTAGATGGGATGAG
GATTTGAATCAATTTAACAGGAGTTACCGTTGACTCTGGATTTTACAGTCCCACTCATGGGCAT
ATTCCTGAAGGAAAGCCTTTTTACAAAAAGAGCTGATGGACTCCCTACTTTCTTTACTATTTGT
TTAATAGTCTTTATTACTGTATCTTACATATTTTTTTTGTAAGATATATGTGCATGGAAGGGGA
ACTCTTGGGAATTTATAACCTAAGTTTTTAACTTTTTATATTTTTCTACAACTTAAAAGAATTT
TAATTACCATGATATTGACTGCACTTTTCTATAAATGGTTTGTTTAAATTGTGTCTGGAAATGG
AGTTGATTTACTTGACAAACATGAACTATACAAACAGGATGTATTTATATGGCTTCAGGTATGT
TTTATAAGAGTATTGTCCTTGAATTATACATCTTAATTTTACTTAATTTTAAAATAATACCTTT
TTAAAATAGGTTCTTAGATCTTTATTCTTCCAAATTATGTTATCTGAAAACACTACCCAAGGAG
GGCTCCATTTTTTTGTTGTTGTTTGCTTTTTTTTGGTGATCAGAATAAATGAAAGAGACTTGAA
ATACTTTCTTGATCTAAGTGCTTTTTAAATTAATTAAAATGTTATGTTGAGATATTGTTAAAAT
TCTCAATGAACACCTCTTTCATAGGATAGACCTTTTCAGATCTAGGTGCTCCTTGTCACTCTCA
TTCTATCAGAAGCCACAGTGGGTACAGAGACTTGTGTTTTATAATCAGATAATGCTTGGATACT
CAGTCAATAAGAACAAAAATGTTGGTTTAAAATTACTTTTATAAGGAAATAAATCTAAAATAAT
TTCTCAATTTAAAAGAATAGCACTTCTCTTGCACTGAAGAATGTCATCTATAGGATTCTCTATT
TAGGCAAACTTTGAGAAATATATTTTGAGTAATAGATTTATAATGTTGCATTTAACTGAAAGTA
TATACATTTATATCAAGGTGAAAATGCTATAAACAATATGACTCCTTTTCACTTTGTTAAAATT
GGTAAGTTTGGTAACTTGTACTGACAACAAACATAACTAGTATCTAACAATAACAAGATTAAGT
ATGTCTAAGACAGTTTAATATGATTGTTTATTTAAAAAATTTTACTTTGGTGCATCACATTTTA
GTCACATTTTTTAAGTCCCTGAACTTTCCTTAATCAGGTCGCTTATTACTCTAGTCAGCACCAG
AATGCAGTTTCTTGAAATTCTGGGCATAGGACATCAGGGACACTGAGTAAAACACATTCTACTT
CAGATATAAAATCATAACACCCTAAATTTGATAGGTGGCCGAAATGTAACGAAGCCAACACAAG
AAGATAGAATGTAAATTTTGAACTTAATTTTAGAGAAAAACTTGTTTGTGTATCTCTTTGGTTC
CTTTGTGTAACATTTACACTTACTCATTTTTTTTTAAACACTAAACCTATACTCTTGTCATCTT
TTTAATTTTCATCTAGTTTAAGAGTAAATAAAAGTCTAAAATTTTTTTATTTCCTATAAGTGAT
TACTATAGTAGACAATACTGTTCATTTATTAAAAATGAGTAAAAATGATTTTGAAACTTAATAT
GATAAAGTAAATGTTTATATATTTCTCTCAAAATATTAATTTGTATTCTTAAAGCATTCTAAAA
ATATTTTAAAAGAAGTTTTGTAAATCCAGGTTGCTTTTAACAAGTAAATGCCTTTTTTGTCATA
TGCTGCATTTTTATTCTTAATCATCACAAATACTGACATTTTCACACAATAAAAATAATATATA
TCAA

hide sequence

RefSeq Acc Id:

XM_038444648 ⟹ XP_038300576

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	33	1,798,057 - 1,862,534 (+)	NCBI

RefSeq Acc Id:

XM_038444649 ⟹ XP_038300577

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	33	1,812,538 - 1,862,534 (+)	NCBI

RefSeq Acc Id:

XM_038444650 ⟹ XP_038300578

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	33	1,798,026 - 1,862,534 (+)	NCBI

RefSeq Acc Id:

XM_038462318 ⟹ XP_038318246

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	33	1,878,138 - 1,942,635 (+)	NCBI

RefSeq Acc Id:

XM_038518988 ⟹ XP_038374916

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	33	1,707,219 - 1,771,378 (+)	NCBI

RefSeq Acc Id:

XM_038518989 ⟹ XP_038374917

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	33	1,721,558 - 1,771,378 (+)	NCBI

RefSeq Acc Id:

XM_038518990 ⟹ XP_038374918

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	33	1,707,188 - 1,771,378 (+)	NCBI

RefSeq Acc Id:

XM_038582504 ⟹ XP_038438432

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	33	1,967,176 - 2,031,460 (+)	NCBI

RefSeq Acc Id:

XM_038582505 ⟹ XP_038438433

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	33	1,981,714 - 2,031,460 (+)	NCBI

RefSeq Acc Id:

XM_038582506 ⟹ XP_038438434

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	33	1,967,145 - 2,031,460 (+)	NCBI

RefSeq Acc Id:

XM_038646932 ⟹ XP_038502860

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	33	1,742,101 - 1,806,566 (+)	NCBI

RefSeq Acc Id:

XM_038646933 ⟹ XP_038502861

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	33	1,756,857 - 1,806,566 (+)	NCBI

RefSeq Acc Id:

XM_038646934 ⟹ XP_038502862

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	33	1,742,070 - 1,806,566 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005639401	(Get FASTA)	NCBI Sequence Viewer
	XP_022269448	(Get FASTA)	NCBI Sequence Viewer
	XP_038300576	(Get FASTA)	NCBI Sequence Viewer
	XP_038300577	(Get FASTA)	NCBI Sequence Viewer
	XP_038300578	(Get FASTA)	NCBI Sequence Viewer
	XP_038318246	(Get FASTA)	NCBI Sequence Viewer
	XP_038374916	(Get FASTA)	NCBI Sequence Viewer
	XP_038374917	(Get FASTA)	NCBI Sequence Viewer
	XP_038374918	(Get FASTA)	NCBI Sequence Viewer
	XP_038438432	(Get FASTA)	NCBI Sequence Viewer
	XP_038438433	(Get FASTA)	NCBI Sequence Viewer
	XP_038438434	(Get FASTA)	NCBI Sequence Viewer
	XP_038502860	(Get FASTA)	NCBI Sequence Viewer
	XP_038502861	(Get FASTA)	NCBI Sequence Viewer
	XP_038502862	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000013262.3
	ENSCAFP00000054719.1
	ENSCAFP00000065898.2
	ENSCAFP00030027203.1
	ENSCAFP00030027263.1
	ENSCAFP00030027330.1
	ENSCAFP00030028030.1
	ENSCAFP00030028086.1
	ENSCAFP00030028193.1
	ENSCAFP00030028286.1
	ENSCAFP00030028351.1
	ENSCAFP00030028363.1
	ENSCAFP00040033491.1
	ENSCAFP00040033677.1
	ENSCAFP00845042685
	ENSCAFP00845042685.1
	ENSCAFP00845042694.1
	ENSCAFP00845042708.1

RefSeq Acc Id:	XP_005639401 ⟸ XM_005639344
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0NQG3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDLRQGKFEVTIFDLGGGKRIRGIWKNYYAEA YGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKEGALGEADVIECLSLEKLV NEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWLLHIIARDFDTLNERIQRDITEQRALEEQEKR ERAERVRKLREEREQREREQAELNGSSSLAELDPEPITVNPFQPIASVILENERKLEKEKRRQN MEKDSDGRPLKHKVEHEQIETQSQISDSSQKTNELGVVENYKEALTQQLENEDETDQRSSESDN SKKKTKKLRIKRSHRVEPVNTDDSAPKSPTPPPPPPPVGWGTLKVTRLPKLEPLGETRHNDFYG KPLPPLAVQQRPNSDAHDVIS hide sequence

RefSeq Acc Id:	XP_022269448 ⟸ XM_022413740
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I3SCR3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDLRQGKFEVTIFDLGGGKRIRGIWKNYYAEA YGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKEGALGEADVIECLSLEKLV NEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWLLHIIARDFDTLNERIQRDITEQRALEEQEKR ERAERVRKLREEREQREREQAELNGSSSLAELDPEPITVNPFQPIASVILENERKLEKEKRRQN MEKDSDGRPLKHKVEHEQIETQSQISDSSQKTNELGVVENYKEALTQQLENEDETDQRSSESDN SKKKTKKLRIKRSHRVEPVNTDDSAPKSPTPPPPPPPDFYGKPLPPLAVQQRPNSDAHDVIS hide sequence

RefSeq Acc Id:

ENSCAFP00000013262 ⟸ ENSCAFT00000014341

RefSeq Acc Id:

ENSCAFP00000065898 ⟸ ENSCAFT00000066751

RefSeq Acc Id:

ENSCAFP00000054719 ⟸ ENSCAFT00000066011

RefSeq Acc Id:	XP_038374918 ⟸ XM_038518990
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038374916 ⟸ XM_038518988
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038374917 ⟸ XM_038518989
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038502862 ⟸ XM_038646934
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038502860 ⟸ XM_038646932
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038502861 ⟸ XM_038646933
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038300578 ⟸ XM_038444650
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0NQG3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038300576 ⟸ XM_038444648
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I3Q4T0 (UniProtKB/TrEMBL), A0A8C0NQG3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038300577 ⟸ XM_038444649
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I3SCR3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038318246 ⟸ XM_038462318
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0NIW7 (UniProtKB/TrEMBL), A0A8C0QY84 (UniProtKB/TrEMBL), A0A8P0NB37 (UniProtKB/TrEMBL), A0A8C0NQG3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038438434 ⟸ XM_038582506
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0NQG3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038438432 ⟸ XM_038582504
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0NIW7 (UniProtKB/TrEMBL), A0A8C0NQG3 (UniProtKB/TrEMBL), A0A8C0QY84 (UniProtKB/TrEMBL), A0A8P0NB37 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038438433 ⟸ XM_038582505
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I3SCR3 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845042694 ⟸ ENSCAFT00845054336

RefSeq Acc Id:

ENSCAFP00845042685 ⟸ ENSCAFT00845054325

RefSeq Acc Id:

ENSCAFP00845042708 ⟸ ENSCAFT00845054355

Promoters

RGD ID:

13688773

Promoter ID:

EPDNEW_C6839

Type:

multiple initiation site

Name:

ARL13B_1

Description:

ADP ribosylation factor like GTPase 13B

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	33	1,698,351 - 1,698,411	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000009020	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030016902	UniProtKB/TrEMBL
	ENSCAFG00030017446	UniProtKB/TrEMBL
	ENSCAFG00040020660	UniProtKB/TrEMBL
	ENSCAFG00845030616	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000014341.5	UniProtKB/TrEMBL
	ENSCAFT00000066011.2	UniProtKB/TrEMBL
	ENSCAFT00000066751.2	UniProtKB/TrEMBL
	ENSCAFT00030031177.1	UniProtKB/TrEMBL
	ENSCAFT00030031241.1	UniProtKB/TrEMBL
	ENSCAFT00030031315.1	UniProtKB/TrEMBL
	ENSCAFT00030032142.1	UniProtKB/TrEMBL
	ENSCAFT00030032207.1	UniProtKB/TrEMBL
	ENSCAFT00030032330.1	UniProtKB/TrEMBL
	ENSCAFT00030032427.1	UniProtKB/TrEMBL
	ENSCAFT00030032504.1	UniProtKB/TrEMBL
	ENSCAFT00030032519.1	UniProtKB/TrEMBL
	ENSCAFT00040038402.1	UniProtKB/TrEMBL
	ENSCAFT00040038610.1	UniProtKB/TrEMBL
	ENSCAFT00845054325	ENTREZGENE
	ENSCAFT00845054325.1	UniProtKB/TrEMBL
	ENSCAFT00845054336.1	UniProtKB/TrEMBL
	ENSCAFT00845054355.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
InterPro	P-loop_NTPase	UniProtKB/TrEMBL
	Small_GTP-bd_dom	UniProtKB/TrEMBL
	Small_GTPase_ARF/SAR	UniProtKB/TrEMBL
NCBI Gene	ARL13B	ENTREZGENE
PANTHER	ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 13B	UniProtKB/TrEMBL
	ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 13B	UniProtKB/TrEMBL
Pfam	Arf	UniProtKB/TrEMBL
PRINTS	SAR1GTPBP	UniProtKB/TrEMBL
PROSITE	ARF	UniProtKB/TrEMBL
SMART	ARF	UniProtKB/TrEMBL
	SAR	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	A0A8C0NIW7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0NJ21_CANLF	UniProtKB/TrEMBL
	A0A8C0NK34_CANLF	UniProtKB/TrEMBL
	A0A8C0NMT1_CANLF	UniProtKB/TrEMBL
	A0A8C0NQG3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0NU75_CANLF	UniProtKB/TrEMBL
	A0A8C0NWH7_CANLF	UniProtKB/TrEMBL
	A0A8C0QY84	ENTREZGENE
	A0A8C0RMG3_CANLF	UniProtKB/TrEMBL
	A0A8C0TEM1_CANLF	UniProtKB/TrEMBL
	A0A8I3Q4T0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3QC42_CANLF	UniProtKB/TrEMBL
	A0A8I3SCR3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0NB37	ENTREZGENE
UniProt Secondary	A0A8P0NB37	UniProtKB/TrEMBL
	A0A8P0T708	UniProtKB/TrEMBL
VGNC ID	VGNC:38106	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM