MIR216B (microRNA mir-216b) - Rat Genome Database

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Gene: MIR216B (microRNA mir-216b) Canis lupus familiaris
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Symbol: MIR216B (Ensembl: cfa-mir-216b)
Name: microRNA mir-216b (Ensembl:cfa-mir-216b)
RGD ID: 12347783
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: cfa-mir-216b; microRNA 216b
RGD Orthologs
Human
Mouse
Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11056,772,853 - 56,772,914 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1056,772,853 - 56,772,914 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1056,729,244 - 56,729,305 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01057,777,763 - 57,777,824 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11057,477,457 - 57,477,518 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01057,756,790 - 57,756,851 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01058,048,598 - 58,048,659 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
pancreatitis  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References
Additional References at PubMed
PMID:16381832   PMID:18392026  


Genomics

Comparative Map Data
MIR216B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11056,772,853 - 56,772,914 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1056,772,853 - 56,772,914 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1056,729,244 - 56,729,305 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01057,777,763 - 57,777,824 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11057,477,457 - 57,477,518 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01057,756,790 - 57,756,851 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01058,048,598 - 58,048,659 (-)NCBIUU_Cfam_GSD_1.0
MIR216B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38256,000,714 - 56,000,795 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl256,000,714 - 56,000,795 (-)EnsemblGRCh38hg38GRCh38
GRCh37256,227,849 - 56,227,930 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36256,081,352 - 56,081,433 (-)NCBINCBI36Build 36hg18NCBI36
Celera256,068,265 - 56,068,346 (-)NCBICelera
Cytogenetic Map2p16.1NCBI
HuRef255,962,869 - 55,962,950 (-)NCBIHuRef
CHM1_1256,157,781 - 56,157,862 (-)NCBICHM1_1
T2T-CHM13v2.0255,997,657 - 55,997,738 (-)NCBIT2T-CHM13v2.0
Mir216b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391128,696,191 - 28,696,276 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1128,696,191 - 28,696,276 (+)EnsemblGRCm39 Ensembl
GRCm381128,746,191 - 28,746,276 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1128,746,191 - 28,746,276 (+)EnsemblGRCm38mm10GRCm38
MGSCv371128,646,191 - 28,646,276 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1131,118,150 - 31,118,235 (+)NCBICelera
Cytogenetic Map11A3.3NCBI
cM Map1116.23NCBI
Mir216b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr814106,714,026 - 106,714,127 (+)NCBIGRCr8
mRatBN7.214102,513,054 - 102,513,155 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl14102,513,054 - 102,513,155 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx14106,841,244 - 106,841,345 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.014108,077,872 - 108,077,973 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.014104,550,284 - 104,550,385 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.014113,101,078 - 113,101,179 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14113,101,078 - 113,101,179 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014112,790,786 - 112,790,887 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera14101,413,160 - 101,413,261 (+)NCBICelera
Cytogenetic Map14q22NCBI


Expression


Sequence


RefSeq Acc Id: ENSCAFT00000078261
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1056,772,853 - 56,772,914 (-)Ensembl
RefSeq Acc Id: NR_049218
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11056,772,853 - 56,772,914 (-)NCBI
Dog10K_Boxer_Tasha1056,729,244 - 56,729,305 (-)NCBI
ROS_Cfam_1.01057,777,763 - 57,777,824 (-)NCBI
UMICH_Zoey_3.11057,477,457 - 57,477,518 (-)NCBI
UNSW_CanFamBas_1.01057,756,790 - 57,756,851 (-)NCBI
UU_Cfam_GSD_1.01058,048,598 - 58,048,659 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000042382 Ensembl
  ENSCAFG00845012209 ENTREZGENE
Ensembl Transcript ENSCAFT00845021707 ENTREZGENE
miRBase MI0007987 ENTREZGENE
NCBI Gene MIR216B ENTREZGENE
RNAcentral URS000046CDA6 RNACentral
  URS00007E3A13 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 MIR216B  microRNA mir-216b    microRNA 216b  Symbol and/or name change 5135510 APPROVED