OLFM2 (olfactomedin 2) - Rat Genome Database

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Advanced Search (OLGA)
Gene: OLFM2 (olfactomedin 2) Canis lupus familiaris
Analyze
Symbol: OLFM2
Name: olfactomedin 2
RGD ID: 12345669
Description: INVOLVED IN locomotory behavior (ortholog); neurotransmitter receptor localization to postsynaptic specialization membrane (ortholog); protein secretion (ortholog); ASSOCIATED WITH autistic disorder (ortholog); FOUND IN AMPA glutamate receptor complex (ortholog); extrinsic component of postsynaptic density membrane (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: noelin-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12051,148,013 - 51,153,303 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2051,148,157 - 51,153,314 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2050,955,590 - 51,016,889 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02051,613,108 - 51,674,476 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2051,612,962 - 51,674,473 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12050,820,875 - 50,882,225 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02051,245,805 - 51,307,078 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02051,486,759 - 51,548,349 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
OLFM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12051,148,013 - 51,153,303 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2051,148,157 - 51,153,314 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2050,955,590 - 51,016,889 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02051,613,108 - 51,674,476 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2051,612,962 - 51,674,473 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12050,820,875 - 50,882,225 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02051,245,805 - 51,307,078 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02051,486,759 - 51,548,349 (+)NCBIUU_Cfam_GSD_1.0
OLFM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38199,853,718 - 9,936,515 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl199,853,718 - 9,936,515 (-)EnsemblGRCh38hg38GRCh38
GRCh37199,964,394 - 10,047,191 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36199,825,394 - 9,908,070 (-)NCBINCBI36Build 36hg18NCBI36
Build 34199,825,394 - 9,908,070NCBI
Celera199,859,823 - 9,942,535 (-)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef199,545,037 - 9,627,331 (-)NCBIHuRef
CHM1_1199,964,109 - 10,046,786 (-)NCBICHM1_1
T2T-CHM13v2.0199,979,884 - 10,062,687 (-)NCBIT2T-CHM13v2.0
Olfm2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39920,578,986 - 20,657,660 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl920,578,986 - 20,657,645 (-)EnsemblGRCm39 Ensembl
GRCm38920,667,690 - 20,746,333 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl920,667,690 - 20,746,349 (-)EnsemblGRCm38mm10GRCm38
MGSCv37920,472,430 - 20,532,658 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36920,418,102 - 20,478,631 (-)NCBIMGSCv36mm8
Celera917,938,428 - 17,996,310 (-)NCBICelera
Cytogenetic Map9A3NCBI
cM Map97.6NCBI
Olfm2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8827,480,703 - 27,558,416 (-)NCBIGRCr8
mRatBN7.2819,204,472 - 19,282,154 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl819,204,475 - 19,282,117 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx823,224,798 - 23,283,196 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0821,522,638 - 21,581,036 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0819,434,221 - 19,493,166 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0821,684,307 - 21,762,000 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl821,681,266 - 21,743,338 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0821,740,363 - 21,818,045 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4819,685,433 - 19,746,974 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1819,685,433 - 19,746,974 (-)NCBI
Celera820,599,780 - 20,658,825 (-)NCBICelera
Cytogenetic Map8q13NCBI
Olfm2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554951,264,831 - 1,328,877 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554951,264,831 - 1,328,877 (-)NCBIChiLan1.0ChiLan1.0
OLFM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22014,772,348 - 14,855,375 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11913,774,905 - 13,855,608 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0199,408,161 - 9,488,855 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11910,071,375 - 10,151,178 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1910,071,375 - 10,151,183 (-)Ensemblpanpan1.1panPan2
Olfm2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118209,969,055 - 210,029,710 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936659325,436 - 372,225 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936659324,996 - 385,646 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OLFM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl268,734,081 - 68,807,191 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1268,734,078 - 68,807,207 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2269,063,856 - 69,135,514 (-)NCBISscrofa10.2Sscrofa10.2susScr3
OLFM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.168,939,966 - 8,947,913 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl68,939,603 - 8,947,678 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607411,068,366 - 11,161,713 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Olfm2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248282,135,245 - 2,200,332 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248282,134,728 - 2,200,354 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in OLFM2
93 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005633214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038428688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038428689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038428690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038455376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038455377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038455378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038504332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038504333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038504334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038567364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038567365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038567366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038631512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038631513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038631514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00000028524   ⟹   ENSCAFP00000026532
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2051,148,157 - 51,153,314 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845040137   ⟹   ENSCAFP00845031434
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2051,612,962 - 51,674,473 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845040193   ⟹   ENSCAFP00845031479
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2051,629,829 - 51,674,473 (+)Ensembl
RefSeq Acc Id: XM_038428688   ⟹   XP_038284616
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02051,629,917 - 51,674,476 (+)NCBI
RefSeq Acc Id: XM_038428689   ⟹   XP_038284617
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02051,613,108 - 51,674,476 (+)NCBI
RefSeq Acc Id: XM_038428690   ⟹   XP_038284618
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02051,666,670 - 51,674,476 (+)NCBI
RefSeq Acc Id: XM_038455376   ⟹   XP_038311304
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2050,972,393 - 51,016,889 (+)NCBI
RefSeq Acc Id: XM_038455377   ⟹   XP_038311305
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2050,955,590 - 51,016,889 (+)NCBI
RefSeq Acc Id: XM_038455378   ⟹   XP_038311306
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2051,009,083 - 51,016,889 (+)NCBI
RefSeq Acc Id: XM_038504332   ⟹   XP_038360260
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12050,837,719 - 50,882,225 (+)NCBI
RefSeq Acc Id: XM_038504333   ⟹   XP_038360261
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12050,820,875 - 50,882,225 (+)NCBI
RefSeq Acc Id: XM_038504334   ⟹   XP_038360262
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12050,874,424 - 50,882,225 (+)NCBI
RefSeq Acc Id: XM_038567364   ⟹   XP_038423292
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02051,503,587 - 51,548,349 (+)NCBI
RefSeq Acc Id: XM_038567365   ⟹   XP_038423293
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02051,486,759 - 51,548,349 (+)NCBI
RefSeq Acc Id: XM_038567366   ⟹   XP_038423294
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02051,540,544 - 51,548,349 (+)NCBI
RefSeq Acc Id: XM_038631512   ⟹   XP_038487440
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02051,262,585 - 51,307,078 (+)NCBI
RefSeq Acc Id: XM_038631513   ⟹   XP_038487441
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02051,245,805 - 51,307,078 (+)NCBI
RefSeq Acc Id: XM_038631514   ⟹   XP_038487442
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02051,299,275 - 51,307,078 (+)NCBI
Ensembl Acc Id: ENSCAFP00000026532   ⟸   ENSCAFT00000028524
RefSeq Acc Id: XP_038360261   ⟸   XM_038504333
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038360260   ⟸   XM_038504332
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038360262   ⟸   XM_038504334
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038487441   ⟸   XM_038631513
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038487440   ⟸   XM_038631512
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038487442   ⟸   XM_038631514
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038284617   ⟸   XM_038428689
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LFR0 (UniProtKB/TrEMBL),   A0A8C0TQ03 (UniProtKB/TrEMBL),   A0A8I3PGF8 (UniProtKB/TrEMBL),   A0A8C0P781 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038284616   ⟸   XM_038428688
- Peptide Label: isoform X1
- UniProtKB: A0A8C0TN52 (UniProtKB/TrEMBL),   A0A8I3PQ69 (UniProtKB/TrEMBL),   A0A8C0P781 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038284618   ⟸   XM_038428690
- Peptide Label: isoform X3
- UniProtKB: A0A8C0P781 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038311305   ⟸   XM_038455377
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LFR0 (UniProtKB/TrEMBL),   A0A8C0TQ03 (UniProtKB/TrEMBL),   A0A8I3PGF8 (UniProtKB/TrEMBL),   A0A8C0P781 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038311304   ⟸   XM_038455376
- Peptide Label: isoform X1
- UniProtKB: A0A8C0TN52 (UniProtKB/TrEMBL),   A0A8I3PQ69 (UniProtKB/TrEMBL),   A0A8C0P781 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038311306   ⟸   XM_038455378
- Peptide Label: isoform X3
- UniProtKB: A0A8C0P781 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038423293   ⟸   XM_038567365
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LFR0 (UniProtKB/TrEMBL),   A0A8C0P781 (UniProtKB/TrEMBL),   A0A8C0TQ03 (UniProtKB/TrEMBL),   A0A8I3PGF8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038423292   ⟸   XM_038567364
- Peptide Label: isoform X1
- UniProtKB: A0A8C0P781 (UniProtKB/TrEMBL),   A0A8C0TN52 (UniProtKB/TrEMBL),   A0A8I3PQ69 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038423294   ⟸   XM_038567366
- Peptide Label: isoform X3
- UniProtKB: A0A8C0P781 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845031479   ⟸   ENSCAFT00845040193
Ensembl Acc Id: ENSCAFP00845031434   ⟸   ENSCAFT00845040137
Protein Domains
Olfactomedin-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000017965 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030022866 UniProtKB/TrEMBL
  ENSCAFG00040023415 UniProtKB/TrEMBL
  ENSCAFG00845022738 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000028524.5 UniProtKB/TrEMBL
  ENSCAFT00000106202.1 UniProtKB/TrEMBL
  ENSCAFT00030042074.1 UniProtKB/TrEMBL
  ENSCAFT00040043524.1 UniProtKB/TrEMBL
  ENSCAFT00040043538.1 UniProtKB/TrEMBL
  ENSCAFT00845040137 ENTREZGENE
  ENSCAFT00845040137.1 UniProtKB/TrEMBL
  ENSCAFT00845040193 ENTREZGENE
  ENSCAFT00845040193.1 UniProtKB/TrEMBL
InterPro Noelin_dom UniProtKB/TrEMBL
  Olfac-like_dom UniProtKB/TrEMBL
  Olfactomedin-like_domain UniProtKB/TrEMBL
NCBI Gene OLFM2 ENTREZGENE
PANTHER OLFACTOMEDIN-RELATED UniProtKB/TrEMBL
  PTHR23192:SF27 UniProtKB/TrEMBL
Pfam Noelin-1 UniProtKB/TrEMBL
  OLF UniProtKB/TrEMBL
PROSITE OLF UniProtKB/TrEMBL
SMART OLF UniProtKB/TrEMBL
UniProt A0A8C0LFR0 ENTREZGENE
  A0A8C0P781 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0TN52 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0TQ03 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PGF8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PQ69 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:44113 ENTREZGENE