LOC612180 (immunoglobulin lambda variable 1-40) - Rat Genome Database

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Gene: LOC612180 (immunoglobulin lambda variable 1-40) Canis lupus familiaris
Analyze
Symbol: LOC612180
Name: immunoglobulin lambda variable 1-40
RGD ID: 12341867
Description: INVOLVED IN immune response (inferred); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Ig lambda chain V-I region BL2
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12626,019,669 - 26,020,324 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
ROS_Cfam_1.02625,436,936 - 25,437,595 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12625,135,752 - 25,136,411 (+)NCBIUMICH_Zoey_3.1
UU_Cfam_GSD_1.02626,049,883 - 26,050,542 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
COVID-19  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LOC612180
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12626,019,669 - 26,020,324 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
ROS_Cfam_1.02625,436,936 - 25,437,595 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12625,135,752 - 25,136,411 (+)NCBIUMICH_Zoey_3.1
UU_Cfam_GSD_1.02626,049,883 - 26,050,542 (+)NCBIUU_Cfam_GSD_1.0
IGLV1-51
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382222,322,508 - 22,322,969 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2222,322,472 - 22,322,969 (+)EnsemblGRCh38hg38GRCh38
GRCh372222,676,864 - 22,677,325 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362221,007,030 - 21,007,325NCBINCBI36Build 36hg18NCBI36
Celera226,484,822 - 6,485,283 (+)NCBICelera
Cytogenetic Map22q11.22NCBI
HuRef225,635,345 - 5,635,806 (+)NCBIHuRef
CHM1_12222,676,978 - 22,677,439 (+)NCBICHM1_1
T2T-CHM13v2.02222,736,243 - 22,736,704 (+)NCBIT2T-CHM13v2.0

Variants

.
Variants in LOC612180
96 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_038436119   ⟹   XP_038292047
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02625,436,936 - 25,437,595 (+)NCBI
RefSeq Acc Id: XM_038512601   ⟹   XP_038368529
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12625,135,752 - 25,136,411 (+)NCBI
RefSeq Acc Id: XM_038574507   ⟹   XP_038430435
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02626,049,883 - 26,050,542 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038292047 (Get FASTA)   NCBI Sequence Viewer  
  XP_038368529 (Get FASTA)   NCBI Sequence Viewer  
  XP_038430435 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ABY55558 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00030034037.1
  ENSCAFP00845035983.1
  ENSCAFP00845038552
  ENSCAFP00845038552.1
Reference Protein Sequences
RefSeq Acc Id: XP_038368529   ⟸   XM_038512601
RefSeq Acc Id: XP_038292047   ⟸   XM_038436119
- UniProtKB: A0A8I3SB13 (UniProtKB/TrEMBL),   A0A8C0RQA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038430435   ⟸   XM_038574507
- UniProtKB: A0A8I3S5N2 (UniProtKB/TrEMBL)
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00030021179 UniProtKB/TrEMBL
  ENSCAFG00845025981 UniProtKB/TrEMBL
  ENSCAFG00845027857 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00030039027.1 UniProtKB/TrEMBL
  ENSCAFT00845045835.1 UniProtKB/TrEMBL
  ENSCAFT00845049138 ENTREZGENE
  ENSCAFT00845049138.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
NCBI Gene LOC612180 ENTREZGENE
PANTHER IMMUNOGLOBULIN LAMBDA VARIABLE 1-40-RELATED UniProtKB/TrEMBL
  IMMUNOGLOBULIN LIGHT CHAIN UniProtKB/TrEMBL
Pfam V-set UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGv UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A8C0RQA4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3S5N2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3SB13 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-09-12 LOC612180  immunoglobulin lambda variable 1-40    Ig lambda chain V-I region BL2  Symbol and/or name change 5135510 APPROVED