CENPP (centromere protein P) - Rat Genome Database

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Gene: CENPP (centromere protein P) Canis lupus familiaris
Analyze
Symbol: CENPP
Name: centromere protein P
RGD ID: 12339926
Description: INVOLVED IN CENP-A containing chromatin assembly (inferred); ASSOCIATED WITH genetic disease (ortholog); hereditary sensory and autonomic neuropathy type 1 (ortholog); hereditary sensory neuropathy (ortholog); FOUND IN inner kinetochore (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1198,801,384 - 99,019,371 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl198,799,939 - 99,019,334 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha199,195,230 - 99,413,185 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0199,418,188 - 99,636,324 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl199,396,222 - 99,636,272 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1199,031,281 - 99,249,303 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0198,766,768 - 98,984,492 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0199,522,458 - 99,741,277 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CENPP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1198,801,384 - 99,019,371 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl198,799,939 - 99,019,334 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha199,195,230 - 99,413,185 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0199,418,188 - 99,636,324 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl199,396,222 - 99,636,272 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1199,031,281 - 99,249,303 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0198,766,768 - 98,984,492 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0199,522,458 - 99,741,277 (-)NCBIUU_Cfam_GSD_1.0
CENPP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38992,325,468 - 92,620,529 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl992,325,953 - 92,620,529 (+)EnsemblGRCh38hg38GRCh38
GRCh37995,087,750 - 95,382,811 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36994,127,562 - 94,417,267 (+)NCBINCBI36Build 36hg18NCBI36
Celera965,524,050 - 65,819,504 (+)NCBICelera
Cytogenetic Map9q22.31NCBI
HuRef964,765,521 - 65,055,799 (+)NCBIHuRef
CHM1_1995,234,164 - 95,523,848 (+)NCBICHM1_1
T2T-CHM13v2.09104,491,997 - 104,787,103 (+)NCBIT2T-CHM13v2.0
Cenpp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391349,617,501 - 49,806,457 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1349,617,499 - 49,806,261 (-)EnsemblGRCm39 Ensembl
GRCm381349,464,025 - 49,652,950 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1349,464,023 - 49,652,785 (-)EnsemblGRCm38mm10GRCm38
MGSCv371349,559,428 - 49,748,100 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361349,475,996 - 49,664,668 (-)NCBIMGSCv36mm8
Celera1350,553,679 - 50,743,505 (-)NCBICelera
Cytogenetic Map13A5NCBI
cM Map1325.27NCBI
Cenpp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81715,220,521 - 15,395,741 (+)NCBIGRCr8
mRatBN7.21715,014,087 - 15,189,312 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1715,014,058 - 15,189,304 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1714,901,030 - 15,076,491 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01716,506,086 - 16,681,546 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01714,827,824 - 15,003,277 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01715,429,526 - 15,603,197 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1715,429,708 - 15,603,199 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01717,488,014 - 17,661,597 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1714,745,462 - 14,920,256 (+)NCBICelera
Cytogenetic Map17p14NCBI
Cenpp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555155,220,461 - 5,447,983 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555155,220,257 - 5,448,347 (-)NCBIChiLan1.0ChiLan1.0
CENPP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21146,808,226 - 47,104,058 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1946,810,611 - 47,106,432 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0963,447,366 - 63,743,316 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1991,520,939 - 91,808,971 (+)NCBIpanpan1.1PanPan1.1panPan2
Cenpp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049447,760,784 - 7,988,332 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364871,977,341 - 2,199,216 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364871,977,595 - 2,199,276 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CENPP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl342,053,058 - 42,308,429 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1342,053,074 - 42,309,745 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2343,244,379 - 43,492,706 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CENPP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112102,851,498 - 103,121,113 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603891,123,960 - 91,394,606 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cenpp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248683,780,864 - 4,031,972 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CENPP
1521 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 6 6 6 8 1
Low 5 3 15 6 6 3 11 9 6
Below cutoff 2 1 3 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_022422415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022422417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038466690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038466691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038466692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038527411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038527412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038527413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038591710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038591711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038591712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038655504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038655505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038655506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_533561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000003607   ⟹   ENSCAFP00000003340
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl198,799,939 - 99,019,334 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000077773   ⟹   ENSCAFP00000052771
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl198,801,533 - 98,812,217 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000090332   ⟹   ENSCAFP00000057041
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl198,800,455 - 99,019,334 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845043208   ⟹   ENSCAFP00845033873
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl199,396,222 - 99,636,272 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845043305   ⟹   ENSCAFP00845033940
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl199,416,594 - 99,636,272 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845043411   ⟹   ENSCAFP00845034010
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl199,418,337 - 99,429,024 (-)Ensembl
RefSeq Acc Id: XM_022422415   ⟹   XP_022278123
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1198,801,384 - 99,019,371 (-)NCBI
Dog10K_Boxer_Tasha199,195,230 - 99,413,185 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022422417   ⟹   XP_022278125
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1198,801,384 - 99,008,735 (-)NCBI
Dog10K_Boxer_Tasha199,195,230 - 99,402,537 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038466690   ⟹   XP_038322618
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1199,031,281 - 99,249,303 (-)NCBI
RefSeq Acc Id: XM_038466691   ⟹   XP_038322619
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1199,031,281 - 99,249,303 (-)NCBI
RefSeq Acc Id: XM_038466692   ⟹   XP_038322620
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1199,031,281 - 99,238,656 (-)NCBI
RefSeq Acc Id: XM_038527411   ⟹   XP_038383339
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0199,522,458 - 99,741,277 (-)NCBI
RefSeq Acc Id: XM_038527412   ⟹   XP_038383340
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0199,522,458 - 99,741,277 (-)NCBI
RefSeq Acc Id: XM_038527413   ⟹   XP_038383341
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0199,522,458 - 99,730,642 (-)NCBI
RefSeq Acc Id: XM_038591710   ⟹   XP_038447638
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0198,766,768 - 98,984,492 (-)NCBI
RefSeq Acc Id: XM_038591711   ⟹   XP_038447639
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0198,766,768 - 98,984,492 (-)NCBI
RefSeq Acc Id: XM_038591712   ⟹   XP_038447640
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0198,766,768 - 98,973,860 (-)NCBI
RefSeq Acc Id: XM_038655504   ⟹   XP_038511432
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0199,418,188 - 99,636,324 (-)NCBI
RefSeq Acc Id: XM_038655505   ⟹   XP_038511433
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0199,418,188 - 99,636,324 (-)NCBI
RefSeq Acc Id: XM_038655506   ⟹   XP_038511434
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0199,418,188 - 99,625,676 (-)NCBI
RefSeq Acc Id: XM_533561   ⟹   XP_533561
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1198,801,384 - 99,019,371 (-)NCBI
Dog10K_Boxer_Tasha199,195,230 - 99,413,185 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_533561   ⟸   XM_533561
- Peptide Label: isoform X1
- UniProtKB: A0A8C0M0D6 (UniProtKB/TrEMBL),   A0A8C0K8L9 (UniProtKB/TrEMBL),   A0A8C0Q6F3 (UniProtKB/TrEMBL),   A0A8I3PRW7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022278123   ⟸   XM_022422415
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_022278125   ⟸   XM_022422417
- Peptide Label: isoform X3
- UniProtKB: A0A8C0Q6F3 (UniProtKB/TrEMBL),   A0A8I3PRW7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000052771   ⟸   ENSCAFT00000077773
RefSeq Acc Id: ENSCAFP00000003340   ⟸   ENSCAFT00000003607
RefSeq Acc Id: ENSCAFP00000057041   ⟸   ENSCAFT00000090332
RefSeq Acc Id: XP_038322618   ⟸   XM_038466690
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038322619   ⟸   XM_038466691
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038322620   ⟸   XM_038466692
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038447638   ⟸   XM_038591710
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038447639   ⟸   XM_038591711
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038447640   ⟸   XM_038591712
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038511432   ⟸   XM_038655504
- Peptide Label: isoform X1
- UniProtKB: A0A8C0M0D6 (UniProtKB/TrEMBL),   A0A8C0K8L9 (UniProtKB/TrEMBL),   A0A8C0Q6F3 (UniProtKB/TrEMBL),   A0A8I3PRW7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038511433   ⟸   XM_038655505
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038511434   ⟸   XM_038655506
- Peptide Label: isoform X3
- UniProtKB: A0A8C0Q6F3 (UniProtKB/TrEMBL),   A0A8I3PRW7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038383339   ⟸   XM_038527411
- Peptide Label: isoform X1
- UniProtKB: A0A8C0Q6F3 (UniProtKB/TrEMBL),   A0A8I3PRW7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038383340   ⟸   XM_038527412
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038383341   ⟸   XM_038527413
- Peptide Label: isoform X3
- UniProtKB: A0A8C0Q6F3 (UniProtKB/TrEMBL),   A0A8I3PRW7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845033940   ⟸   ENSCAFT00845043305
RefSeq Acc Id: ENSCAFP00845034010   ⟸   ENSCAFT00845043411
RefSeq Acc Id: ENSCAFP00845033873   ⟸   ENSCAFT00845043208

Promoters
RGD ID:13682129
Promoter ID:EPDNEW_C197
Type:multiple initiation site
Name:CENPP_1
Description:centromere protein P
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1199,019,363 - 99,019,423EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000024350 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030001332 UniProtKB/TrEMBL
  ENSCAFG00040001561 UniProtKB/TrEMBL
  ENSCAFG00845024441 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000003607.5 UniProtKB/TrEMBL
  ENSCAFT00000077773.2 UniProtKB/TrEMBL
  ENSCAFT00000090332.2 UniProtKB/TrEMBL
  ENSCAFT00030002373.1 UniProtKB/TrEMBL
  ENSCAFT00030002409.1 UniProtKB/TrEMBL
  ENSCAFT00040002976.1 UniProtKB/TrEMBL
  ENSCAFT00040003001.1 UniProtKB/TrEMBL
  ENSCAFT00040003031.1 UniProtKB/TrEMBL
  ENSCAFT00040003065.1 UniProtKB/TrEMBL
  ENSCAFT00845043208 ENTREZGENE
  ENSCAFT00845043208.1 UniProtKB/TrEMBL
  ENSCAFT00845043305.1 UniProtKB/TrEMBL
  ENSCAFT00845043411.1 UniProtKB/TrEMBL
InterPro CENP-P UniProtKB/TrEMBL
NCBI Gene CENPP ENTREZGENE
PANTHER CENTROMERE PROTEIN P UniProtKB/TrEMBL
  PTHR28577 UniProtKB/TrEMBL
Pfam CENP-P UniProtKB/TrEMBL
UniProt A0A8C0K8L9 ENTREZGENE
  A0A8C0LV41_CANLF UniProtKB/TrEMBL
  A0A8C0M0D6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0PQD9_CANLF UniProtKB/TrEMBL
  A0A8C0Q6F3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PRW7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PWJ0_CANLF UniProtKB/TrEMBL
  A0A8I3Q201_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:39111 ENTREZGENE