SCARB1 (scavenger receptor class B member 1) - Rat Genome Database

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Gene: SCARB1 (scavenger receptor class B member 1) Canis lupus familiaris
Analyze
Symbol: SCARB1
Name: scavenger receptor class B member 1
RGD ID: 12339219
Description: ENCODES a protein that exhibits amyloid-beta binding (ortholog); apolipoprotein A-I binding (ortholog); apolipoprotein binding (ortholog); INVOLVED IN adhesion of symbiont to host (ortholog); androgen biosynthetic process (ortholog); blood vessel endothelial cell migration (ortholog); PARTICIPATES IN retinol metabolic pathway; reverse cholesterol transport pathway; ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); cannabis abuse (ortholog); carcinoma (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); caveola (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1265,035,797 - 5,122,383 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl265,049,407 - 5,121,468 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha265,195,714 - 5,282,186 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0265,282,168 - 5,368,989 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl265,295,032 - 5,368,981 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1265,217,039 - 5,303,430 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0265,308,627 - 5,394,876 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0265,260,548 - 5,347,101 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
SCARB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1265,035,797 - 5,122,383 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl265,049,407 - 5,121,468 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha265,195,714 - 5,282,186 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0265,282,168 - 5,368,989 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl265,295,032 - 5,368,981 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1265,217,039 - 5,303,430 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0265,308,627 - 5,394,876 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0265,260,548 - 5,347,101 (+)NCBIUU_Cfam_GSD_1.0
SCARB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812124,776,856 - 124,863,864 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl12124,776,856 - 124,882,668 (-)EnsemblGRCh38hg38GRCh38
GRCh3712125,261,402 - 125,348,410 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612123,828,127 - 123,914,472 (-)NCBINCBI36Build 36hg18NCBI36
Build 3412123,787,055 - 123,873,214NCBI
Celera12124,862,283 - 124,949,187 (-)NCBICelera
Cytogenetic Map12q24.31NCBI
HuRef12122,224,152 - 122,310,029 (-)NCBIHuRef
CHM1_112125,083,775 - 125,169,604 (-)NCBICHM1_1
T2T-CHM13v2.012124,782,134 - 124,869,001 (-)NCBIT2T-CHM13v2.0
Scarb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395125,354,151 - 125,418,158 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5125,354,151 - 125,418,158 (-)EnsemblGRCm39 Ensembl
GRCm385125,277,087 - 125,341,094 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5125,277,087 - 125,341,094 (-)EnsemblGRCm38mm10GRCm38
MGSCv375125,757,460 - 125,821,444 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365125,566,069 - 125,630,053 (-)NCBIMGSCv36mm8
Celera5122,296,944 - 122,361,197 (-)NCBICelera
Cytogenetic Map5G1.1NCBI
cM Map564.11NCBI
Scarb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21231,296,143 - 31,362,649 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1231,296,156 - 31,362,647 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1232,468,363 - 32,534,776 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01233,079,673 - 33,146,089 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01232,131,509 - 32,197,925 (+)NCBIRnor_WKY
Rnor_6.01236,694,952 - 36,761,445 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1236,694,960 - 36,761,455 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01238,572,152 - 38,638,465 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41232,390,183 - 32,457,661 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11232,253,570 - 32,321,047 (+)NCBI
Celera1232,988,597 - 33,054,666 (+)NCBICelera
Cytogenetic Map12q15NCBI
Scarb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554824,813,955 - 4,837,392 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554824,813,502 - 4,836,479 (+)NCBIChiLan1.0ChiLan1.0
SCARB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112126,651,077 - 126,698,506 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12126,659,532 - 126,694,767 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v012122,293,803 - 122,455,314 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
Scarb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118158,927,028 - 158,948,613 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936558530,828 - 555,098 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SCARB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1428,301,294 - 28,393,568 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11428,301,421 - 28,393,568 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21430,050,898 - 30,093,735 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SCARB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111120,134,485 - 120,223,512 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11120,134,874 - 120,216,904 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037125,058,937 - 125,145,319 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Scarb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474723,973,648 - 24,010,820 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474723,970,782 - 24,010,683 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High 5
Medium 5 2 17 6 6 6 6 12 8 10 6
Low 3 6
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005636096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005636097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005636098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005636100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005636101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005636104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005636105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022410704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038436354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038436355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038436356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038436357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038436358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038436359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038436360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038436361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038436362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038436363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038458819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038458820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038458821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038511275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038511276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038511277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038511278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038511279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038511280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038511281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038511282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038511283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038511284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038574750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038574751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038574752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038574753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038574754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038574755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038574757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038574758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038574759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038574760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038638945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038638946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038638947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038638948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038638949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038638950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038638951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038638952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038638953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038638954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000011181   ⟹   ENSCAFP00000010357
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl265,069,853 - 5,115,142 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000064913   ⟹   ENSCAFP00000048181
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl265,049,407 - 5,115,142 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000074575   ⟹   ENSCAFP00000057688
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl265,069,492 - 5,115,142 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000078960   ⟹   ENSCAFP00000044855
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl265,049,407 - 5,117,433 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000086264   ⟹   ENSCAFP00000055348
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl265,049,407 - 5,121,468 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845028158   ⟹   ENSCAFP00845022154
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl265,295,032 - 5,368,981 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845028176   ⟹   ENSCAFP00845022168
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl265,295,032 - 5,368,207 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845028217   ⟹   ENSCAFP00845022201
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl265,295,032 - 5,368,074 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845028271   ⟹   ENSCAFP00845022244
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl265,295,032 - 5,364,028 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845028356   ⟹   ENSCAFP00845022306
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl265,295,032 - 5,363,462 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845028434   ⟹   ENSCAFP00845022369
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl265,295,467 - 5,368,981 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845028480   ⟹   ENSCAFP00845022402
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl265,316,706 - 5,364,028 (+)Ensembl
RefSeq Acc Id: XM_005636096   ⟹   XP_005636153
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1265,070,192 - 5,122,383 (+)NCBI
Dog10K_Boxer_Tasha265,230,022 - 5,282,186 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005636097   ⟹   XP_005636154
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1265,070,192 - 5,122,383 (+)NCBI
Dog10K_Boxer_Tasha265,230,022 - 5,282,186 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005636098   ⟹   XP_005636155
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1265,035,797 - 5,122,383 (+)NCBI
Dog10K_Boxer_Tasha265,195,714 - 5,282,186 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005636100   ⟹   XP_005636157
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1265,070,361 - 5,122,383 (+)NCBI
Dog10K_Boxer_Tasha265,230,191 - 5,282,186 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005636101   ⟹   XP_005636158
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1265,070,361 - 5,122,383 (+)NCBI
Dog10K_Boxer_Tasha265,230,191 - 5,282,186 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005636105   ⟹   XP_005636162
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1265,070,365 - 5,122,383 (+)NCBI
Dog10K_Boxer_Tasha265,230,195 - 5,282,186 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022410704   ⟹   XP_022266412
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1265,065,263 - 5,122,383 (+)NCBI
Dog10K_Boxer_Tasha265,225,093 - 5,282,186 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038436354   ⟹   XP_038292282
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0265,316,522 - 5,368,989 (+)NCBI
RefSeq Acc Id: XM_038436355   ⟹   XP_038292283
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0265,316,522 - 5,368,989 (+)NCBI
RefSeq Acc Id: XM_038436356   ⟹   XP_038292284
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0265,282,168 - 5,368,989 (+)NCBI
RefSeq Acc Id: XM_038436357   ⟹   XP_038292285
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0265,295,478 - 5,368,989 (+)NCBI
RefSeq Acc Id: XM_038436358   ⟹   XP_038292286
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0265,311,594 - 5,368,989 (+)NCBI
RefSeq Acc Id: XM_038436359   ⟹   XP_038292287
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0265,295,478 - 5,368,989 (+)NCBI
RefSeq Acc Id: XM_038436360   ⟹   XP_038292288
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0265,316,691 - 5,368,989 (+)NCBI
RefSeq Acc Id: XM_038436361   ⟹   XP_038292289
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0265,318,383 - 5,368,989 (+)NCBI
RefSeq Acc Id: XM_038436362   ⟹   XP_038292290
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0265,316,691 - 5,368,989 (+)NCBI
RefSeq Acc Id: XM_038436363   ⟹   XP_038292291
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0265,316,695 - 5,368,989 (+)NCBI
RefSeq Acc Id: XM_038458819   ⟹   XP_038314747
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha265,208,996 - 5,282,186 (+)NCBI
RefSeq Acc Id: XM_038458820   ⟹   XP_038314748
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha265,208,996 - 5,282,186 (+)NCBI
RefSeq Acc Id: XM_038458821   ⟹   XP_038314749
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha265,231,625 - 5,282,186 (+)NCBI
RefSeq Acc Id: XM_038511275   ⟹   XP_038367203
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1265,251,355 - 5,303,430 (+)NCBI
RefSeq Acc Id: XM_038511276   ⟹   XP_038367204
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1265,251,355 - 5,303,430 (+)NCBI
RefSeq Acc Id: XM_038511277   ⟹   XP_038367205
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1265,217,039 - 5,303,430 (+)NCBI
RefSeq Acc Id: XM_038511278   ⟹   XP_038367206
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1265,230,339 - 5,303,430 (+)NCBI
RefSeq Acc Id: XM_038511279   ⟹   XP_038367207
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1265,246,427 - 5,303,430 (+)NCBI
RefSeq Acc Id: XM_038511280   ⟹   XP_038367208
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1265,230,339 - 5,303,430 (+)NCBI
RefSeq Acc Id: XM_038511281   ⟹   XP_038367209
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1265,252,957 - 5,303,430 (+)NCBI
RefSeq Acc Id: XM_038511282   ⟹   XP_038367210
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1265,251,524 - 5,303,430 (+)NCBI
RefSeq Acc Id: XM_038511283   ⟹   XP_038367211
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1265,251,524 - 5,303,430 (+)NCBI
RefSeq Acc Id: XM_038511284   ⟹   XP_038367212
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1265,251,528 - 5,303,430 (+)NCBI
RefSeq Acc Id: XM_038574750   ⟹   XP_038430678
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0265,294,697 - 5,347,101 (+)NCBI
RefSeq Acc Id: XM_038574751   ⟹   XP_038430679
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0265,294,697 - 5,347,101 (+)NCBI
RefSeq Acc Id: XM_038574752   ⟹   XP_038430680
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0265,260,548 - 5,347,101 (+)NCBI
RefSeq Acc Id: XM_038574753   ⟹   XP_038430681
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0265,273,660 - 5,347,101 (+)NCBI
RefSeq Acc Id: XM_038574754   ⟹   XP_038430682
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0265,289,767 - 5,347,101 (+)NCBI
RefSeq Acc Id: XM_038574755   ⟹   XP_038430683
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0265,273,660 - 5,347,101 (+)NCBI
RefSeq Acc Id: XM_038574757   ⟹   XP_038430685
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0265,294,866 - 5,347,101 (+)NCBI
RefSeq Acc Id: XM_038574758   ⟹   XP_038430686
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0265,296,558 - 5,347,101 (+)NCBI
RefSeq Acc Id: XM_038574759   ⟹   XP_038430687
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0265,294,866 - 5,347,101 (+)NCBI
RefSeq Acc Id: XM_038574760   ⟹   XP_038430688
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0265,294,870 - 5,347,101 (+)NCBI
RefSeq Acc Id: XM_038638945   ⟹   XP_038494873
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0265,342,729 - 5,394,876 (+)NCBI
RefSeq Acc Id: XM_038638946   ⟹   XP_038494874
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0265,342,729 - 5,394,876 (+)NCBI
RefSeq Acc Id: XM_038638947   ⟹   XP_038494875
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0265,308,627 - 5,394,876 (+)NCBI
RefSeq Acc Id: XM_038638948   ⟹   XP_038494876
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0265,321,675 - 5,394,876 (+)NCBI
RefSeq Acc Id: XM_038638949   ⟹   XP_038494877
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0265,337,799 - 5,394,876 (+)NCBI
RefSeq Acc Id: XM_038638950   ⟹   XP_038494878
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0265,321,675 - 5,394,876 (+)NCBI
RefSeq Acc Id: XM_038638951   ⟹   XP_038494879
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0265,344,330 - 5,394,876 (+)NCBI
RefSeq Acc Id: XM_038638952   ⟹   XP_038494880
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0265,342,898 - 5,394,876 (+)NCBI
RefSeq Acc Id: XM_038638953   ⟹   XP_038494881
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0265,342,898 - 5,394,876 (+)NCBI
RefSeq Acc Id: XM_038638954   ⟹   XP_038494882
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0265,342,902 - 5,394,876 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005636153 (Get FASTA)   NCBI Sequence Viewer  
  XP_005636154 (Get FASTA)   NCBI Sequence Viewer  
  XP_005636155 (Get FASTA)   NCBI Sequence Viewer  
  XP_005636157 (Get FASTA)   NCBI Sequence Viewer  
  XP_005636158 (Get FASTA)   NCBI Sequence Viewer  
  XP_005636162 (Get FASTA)   NCBI Sequence Viewer  
  XP_022266412 (Get FASTA)   NCBI Sequence Viewer  
  XP_038292282 (Get FASTA)   NCBI Sequence Viewer  
  XP_038292283 (Get FASTA)   NCBI Sequence Viewer  
  XP_038292284 (Get FASTA)   NCBI Sequence Viewer  
  XP_038292285 (Get FASTA)   NCBI Sequence Viewer  
  XP_038292286 (Get FASTA)   NCBI Sequence Viewer  
  XP_038292287 (Get FASTA)   NCBI Sequence Viewer  
  XP_038292288 (Get FASTA)   NCBI Sequence Viewer  
  XP_038292289 (Get FASTA)   NCBI Sequence Viewer  
  XP_038292290 (Get FASTA)   NCBI Sequence Viewer  
  XP_038292291 (Get FASTA)   NCBI Sequence Viewer  
  XP_038314747 (Get FASTA)   NCBI Sequence Viewer  
  XP_038314748 (Get FASTA)   NCBI Sequence Viewer  
  XP_038314749 (Get FASTA)   NCBI Sequence Viewer  
  XP_038367203 (Get FASTA)   NCBI Sequence Viewer  
  XP_038367204 (Get FASTA)   NCBI Sequence Viewer  
  XP_038367205 (Get FASTA)   NCBI Sequence Viewer  
  XP_038367206 (Get FASTA)   NCBI Sequence Viewer  
  XP_038367207 (Get FASTA)   NCBI Sequence Viewer  
  XP_038367208 (Get FASTA)   NCBI Sequence Viewer  
  XP_038367209 (Get FASTA)   NCBI Sequence Viewer  
  XP_038367210 (Get FASTA)   NCBI Sequence Viewer  
  XP_038367211 (Get FASTA)   NCBI Sequence Viewer  
  XP_038367212 (Get FASTA)   NCBI Sequence Viewer  
  XP_038430678 (Get FASTA)   NCBI Sequence Viewer  
  XP_038430679 (Get FASTA)   NCBI Sequence Viewer  
  XP_038430680 (Get FASTA)   NCBI Sequence Viewer  
  XP_038430681 (Get FASTA)   NCBI Sequence Viewer  
  XP_038430682 (Get FASTA)   NCBI Sequence Viewer  
  XP_038430683 (Get FASTA)   NCBI Sequence Viewer  
  XP_038430685 (Get FASTA)   NCBI Sequence Viewer  
  XP_038430686 (Get FASTA)   NCBI Sequence Viewer  
  XP_038430687 (Get FASTA)   NCBI Sequence Viewer  
  XP_038430688 (Get FASTA)   NCBI Sequence Viewer  
  XP_038494873 (Get FASTA)   NCBI Sequence Viewer  
  XP_038494874 (Get FASTA)   NCBI Sequence Viewer  
  XP_038494875 (Get FASTA)   NCBI Sequence Viewer  
  XP_038494876 (Get FASTA)   NCBI Sequence Viewer  
  XP_038494877 (Get FASTA)   NCBI Sequence Viewer  
  XP_038494878 (Get FASTA)   NCBI Sequence Viewer  
  XP_038494879 (Get FASTA)   NCBI Sequence Viewer  
  XP_038494880 (Get FASTA)   NCBI Sequence Viewer  
  XP_038494881 (Get FASTA)   NCBI Sequence Viewer  
  XP_038494882 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005636155   ⟸   XM_005636098
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_005636153   ⟸   XM_005636096
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005636154   ⟸   XM_005636097
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005636158   ⟸   XM_005636101
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_005636157   ⟸   XM_005636100
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_005636162   ⟸   XM_005636105
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_022266412   ⟸   XM_022410704
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: ENSCAFP00000044855   ⟸   ENSCAFT00000078960
RefSeq Acc Id: ENSCAFP00000057688   ⟸   ENSCAFT00000074575
RefSeq Acc Id: ENSCAFP00000048181   ⟸   ENSCAFT00000064913
RefSeq Acc Id: ENSCAFP00000010357   ⟸   ENSCAFT00000011181
RefSeq Acc Id: ENSCAFP00000055348   ⟸   ENSCAFT00000086264
RefSeq Acc Id: XP_038367205   ⟸   XM_038511277
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038367206   ⟸   XM_038511278
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038367208   ⟸   XM_038511280
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038367207   ⟸   XM_038511279
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038367203   ⟸   XM_038511275
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038367204   ⟸   XM_038511276
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038367211   ⟸   XM_038511283
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038367210   ⟸   XM_038511282
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038367212   ⟸   XM_038511284
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038367209   ⟸   XM_038511281
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038494875   ⟸   XM_038638947
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038494876   ⟸   XM_038638948
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038494878   ⟸   XM_038638950
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038494877   ⟸   XM_038638949
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038494873   ⟸   XM_038638945
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038494874   ⟸   XM_038638946
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038494881   ⟸   XM_038638953
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038494880   ⟸   XM_038638952
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038494882   ⟸   XM_038638954
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038494879   ⟸   XM_038638951
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038292284   ⟸   XM_038436356
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038292285   ⟸   XM_038436357
- Peptide Label: isoform X5
- UniProtKB: A0A8C0TLU5 (UniProtKB/TrEMBL),   A0A8C0KK48 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038292287   ⟸   XM_038436359
- Peptide Label: isoform X7
- UniProtKB: A0A8C0KIR6 (UniProtKB/TrEMBL),   A0A8C0TLG2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038292286   ⟸   XM_038436358
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038292282   ⟸   XM_038436354
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038292283   ⟸   XM_038436355
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038292290   ⟸   XM_038436362
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038292288   ⟸   XM_038436360
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038292291   ⟸   XM_038436363
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038292289   ⟸   XM_038436361
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038314747   ⟸   XM_038458819
- Peptide Label: isoform X5
- UniProtKB: A0A8C0TLU5 (UniProtKB/TrEMBL),   A0A8C0KK48 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038314748   ⟸   XM_038458820
- Peptide Label: isoform X7
- UniProtKB: A0A8C0KIR6 (UniProtKB/TrEMBL),   A0A8C0TLG2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038314749   ⟸   XM_038458821
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038430680   ⟸   XM_038574752
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038430681   ⟸   XM_038574753
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038430683   ⟸   XM_038574755
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038430682   ⟸   XM_038574754
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038430678   ⟸   XM_038574750
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038430679   ⟸   XM_038574751
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038430687   ⟸   XM_038574759
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038430685   ⟸   XM_038574757
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038430688   ⟸   XM_038574760
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038430686   ⟸   XM_038574758
- Peptide Label: isoform X1
RefSeq Acc Id: ENSCAFP00845022402   ⟸   ENSCAFT00845028480
RefSeq Acc Id: ENSCAFP00845022168   ⟸   ENSCAFT00845028176
RefSeq Acc Id: ENSCAFP00845022154   ⟸   ENSCAFT00845028158
RefSeq Acc Id: ENSCAFP00845022306   ⟸   ENSCAFT00845028356
RefSeq Acc Id: ENSCAFP00845022201   ⟸   ENSCAFT00845028217
RefSeq Acc Id: ENSCAFP00845022369   ⟸   ENSCAFT00845028434
RefSeq Acc Id: ENSCAFP00845022244   ⟸   ENSCAFT00845028271

Damaging Variants


Assembly: CanFam3.1

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
26 5099571 5099572 G A snv Dachshund (DH098), Bullterrier (BT012)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000006968 Ensembl
  ENSCAFG00030026170 UniProtKB/TrEMBL
  ENSCAFG00040022992 UniProtKB/TrEMBL
  ENSCAFG00845015817 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00030042383.1 UniProtKB/TrEMBL
  ENSCAFP00040037314 UniProtKB/TrEMBL
  ENSCAFP00040037342 UniProtKB/TrEMBL
  ENSCAFP00845022154.1 UniProtKB/TrEMBL
  ENSCAFP00845022168.1 UniProtKB/TrEMBL
  ENSCAFP00845022201.1 UniProtKB/TrEMBL
  ENSCAFP00845022244 ENTREZGENE
  ENSCAFP00845022244.1 UniProtKB/TrEMBL
  ENSCAFP00845022306.1 UniProtKB/TrEMBL
  ENSCAFP00845022369 ENTREZGENE
  ENSCAFP00845022369.1 UniProtKB/TrEMBL
  ENSCAFP00845022402 ENTREZGENE
  ENSCAFP00845022402.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00030048430.1 UniProtKB/TrEMBL
  ENSCAFT00040042778 UniProtKB/TrEMBL
  ENSCAFT00040042806 UniProtKB/TrEMBL
  ENSCAFT00845028158.1 UniProtKB/TrEMBL
  ENSCAFT00845028176.1 UniProtKB/TrEMBL
  ENSCAFT00845028217.1 UniProtKB/TrEMBL
  ENSCAFT00845028271 ENTREZGENE
  ENSCAFT00845028271.1 UniProtKB/TrEMBL
  ENSCAFT00845028356.1 UniProtKB/TrEMBL
  ENSCAFT00845028434 ENTREZGENE
  ENSCAFT00845028434.1 UniProtKB/TrEMBL
  ENSCAFT00845028480 ENTREZGENE
  ENSCAFT00845028480.1 UniProtKB/TrEMBL
InterPro CD36/SCARB1/SNMP1 UniProtKB/TrEMBL
  CD36_fam UniProtKB/TrEMBL
NCBI Gene SCARB1 ENTREZGENE
PANTHER PTHR11923 UniProtKB/TrEMBL
Pfam CD36 UniProtKB/TrEMBL
PRINTS CD36ANTIGEN UniProtKB/TrEMBL
  CD36FAMILY UniProtKB/TrEMBL
UniProt A0A8C0KIR6 ENTREZGENE
  A0A8C0KK48 ENTREZGENE
  A0A8C0TLG2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0TLU5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NNS1_CANLF UniProtKB/TrEMBL
  A0A8I3NT61_CANLF UniProtKB/TrEMBL
  A0A8I3NV84_CANLF UniProtKB/TrEMBL
  A0A8I3NZ38_CANLF UniProtKB/TrEMBL
  A0A8I3RZ24_CANLF UniProtKB/TrEMBL
  A0A8I3RZ34_CANLF UniProtKB/TrEMBL
  A0A8I3S1R6_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:45898 ENTREZGENE