PKD1L1 (polycystin 1 like 1, transient receptor potential channel interacting) - Rat Genome Database

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Gene: PKD1L1 (polycystin 1 like 1, transient receptor potential channel interacting) Canis lupus familiaris
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Symbol: PKD1L1
Name: polycystin 1 like 1, transient receptor potential channel interacting
RGD ID: 12338685
Description: ENCODES a protein that exhibits calcium channel activity (inferred); monoatomic cation channel activity (inferred); INVOLVED IN detection of nodal flow (ortholog); determination of left/right symmetry (ortholog); heart development (ortholog); ASSOCIATED WITH genetic disease (ortholog); pleomorphic xanthoastrocytoma (ortholog); situs inversus (ortholog); FOUND IN calcium channel complex (inferred); cilium (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC102156013; LOC102157319; LOC106559833; LOC111089979; LOC111095074; polycystic kidney disease protein 1-like 1; uncharacterized LOC106559833; uncharacterized LOC111095074
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.116119,639 - 199,418 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha16893,327 - 958,041 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01697,085 - 177,041 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl16101,949 - 177,151 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11696,459 - 170,974 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01630,109 - 106,117 (+)NCBIUNSW_CanFamBas_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
PKD1L1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.116119,639 - 199,418 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha16893,327 - 958,041 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01697,085 - 177,041 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl16101,949 - 177,151 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11696,459 - 170,974 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01630,109 - 106,117 (+)NCBIUNSW_CanFamBas_1.0
PKD1L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38747,774,614 - 47,960,906 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl747,740,202 - 47,948,466 (-)EnsemblGRCh38hg38GRCh38
GRCh37747,814,212 - 47,988,063 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36747,780,815 - 47,954,562 (-)NCBINCBI36Build 36hg18NCBI36
Build 34747,587,529 - 47,761,277NCBI
Celera747,912,632 - 48,087,291 (-)NCBICelera
Cytogenetic Map7p12.3NCBI
HuRef747,698,276 - 47,873,587 (-)NCBIHuRef
CHM1_1747,818,258 - 47,991,724 (-)NCBICHM1_1
T2T-CHM13v2.0747,937,113 - 48,116,591 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2747,854,508 - 48,027,995 (-)NCBI
Pkd1l1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39118,782,025 - 8,924,365 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl118,776,708 - 8,923,266 (-)EnsemblGRCm39 Ensembl
GRCm38118,825,696 - 8,974,709 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl118,826,708 - 8,973,266 (-)EnsemblGRCm38mm10GRCm38
MGSCv37118,726,711 - 8,881,423 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36118,726,711 - 8,881,423 (-)NCBIMGSCv36mm8
MGSCv36118,736,930 - 8,767,599 (-)NCBIMGSCv36mm8
Celera119,268,831 - 9,406,931 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map115.57NCBI
Pkd1l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81487,766,745 - 87,888,647 (-)NCBIGRCr8
mRatBN7.21483,552,964 - 83,670,062 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1483,545,469 - 83,638,498 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01489,047,949 - 89,193,579 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1489,060,447 - 89,179,507 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01488,849,130 - 88,972,494 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41489,228,061 - 89,410,326 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1482,589,392 - 82,724,417 (-)NCBICelera
Cytogenetic Map14q21NCBI
Pkd1l1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554565,497,126 - 5,582,342 (+)NCBIChiLan1.0ChiLan1.0
PKD1L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2652,578,177 - 52,841,380 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17100,903,063 - 101,166,113 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0748,451,329 - 48,596,991 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1748,527,430 - 48,705,584 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl748,545,432 - 48,701,736 (-)Ensemblpanpan1.1panPan2
Pkd1l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118103,047,006 - 103,171,182 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647822,262,017 - 22,347,643 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647822,255,887 - 22,389,477 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PKD1L1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12110,850,618 - 11,030,099 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606211,146,495 - 11,367,241 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pkd1l1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247405,619,253 - 5,703,032 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PKD1L1
2090 total Variants

Expression


Sequence


RefSeq Acc Id: ENSCAFT00845017674   ⟹   ENSCAFP00845013759
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl16101,949 - 172,618 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845017892   ⟹   ENSCAFP00845013938
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl16102,261 - 177,151 (+)Ensembl
RefSeq Acc Id: XM_038452620   ⟹   XP_038308548
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha16893,327 - 958,041 (+)NCBI
RefSeq Acc Id: XM_038498058   ⟹   XP_038353986
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11696,459 - 170,974 (+)NCBI
RefSeq Acc Id: XM_038623192   ⟹   XP_038479120
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01630,109 - 106,117 (+)NCBI
RefSeq Acc Id: XM_038688951   ⟹   XP_038544879
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01697,085 - 177,041 (+)NCBI
RefSeq Acc Id: XP_038353986   ⟸   XM_038498058
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038479120   ⟸   XM_038623192
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038544879   ⟸   XM_038688951
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NDF1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038308548   ⟸   XM_038452620
- Peptide Label: isoform X4
- UniProtKB: A0A8I3NDF1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845013759   ⟸   ENSCAFT00845017674
RefSeq Acc Id: ENSCAFP00845013938   ⟸   ENSCAFT00845017892
Protein Domains
PKD   PLAT   REJ


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000054639 UniProtKB/TrEMBL
  ENSCAFG00845009802 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000097597.1 UniProtKB/TrEMBL
  ENSCAFT00000107417.1 UniProtKB/TrEMBL
  ENSCAFT00845017674 ENTREZGENE
  ENSCAFT00845017674.1 UniProtKB/TrEMBL
  ENSCAFT00845017892.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  PLAT/LH2 domain UniProtKB/TrEMBL
InterPro Ig-like_fold UniProtKB/TrEMBL
  PKD/Chitinase_dom UniProtKB/TrEMBL
  PKD/REJ-like UniProtKB/TrEMBL
  PKD_dom UniProtKB/TrEMBL
  PKD_dom_sf UniProtKB/TrEMBL
  PLAT/LH2_dom UniProtKB/TrEMBL
  PLAT/LH2_dom_sf UniProtKB/TrEMBL
  Polycystin_dom UniProtKB/TrEMBL
  REJ_dom UniProtKB/TrEMBL
NCBI Gene PKD1L1 ENTREZGENE
PANTHER POLYCYSTIC KIDNEY DISEASE PROTEIN 1-LIKE 1 UniProtKB/TrEMBL
  POLYCYSTIN FAMILY MEMBER UniProtKB/TrEMBL
Pfam PKD UniProtKB/TrEMBL
  PLAT UniProtKB/TrEMBL
  Polycystin_dom UniProtKB/TrEMBL
  REJ UniProtKB/TrEMBL
PROSITE PKD UniProtKB/TrEMBL
  PLAT UniProtKB/TrEMBL
  REJ UniProtKB/TrEMBL
SMART PKD UniProtKB/TrEMBL
Superfamily-SCOP SSF49299 UniProtKB/TrEMBL
  SSF49723 UniProtKB/TrEMBL
UniProt A0A8I3N979_CANLF UniProtKB/TrEMBL
  A0A8I3NDF1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0TKX6_CANLF UniProtKB/TrEMBL
  A0A8P0TQN5_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:44598 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-14 PKD1L1  polycystin 1 like 1, transient receptor potential channel interacting  LOC102157319  polycystic kidney disease protein 1-like 1  Data merged from RGD:12240744 737654 PROVISIONAL
2021-01-14 PKD1L1  polycystin 1 like 1, transient receptor potential channel interacting  LOC111089979  polycystic kidney disease protein 1-like 1  Data merged from RGD:13409244 737654 PROVISIONAL
2021-01-14 PKD1L1  polycystin 1 like 1, transient receptor potential channel interacting  LOC111095074  uncharacterized LOC111095074  Data merged from RGD:13259268 737654 PROVISIONAL
2021-01-14 PKD1L1  polycystin 1 like 1, transient receptor potential channel interacting  LOC102156013  polycystic kidney disease protein 1-like 1  Data merged from RGD:12271461 737654 PROVISIONAL
2017-11-21 PKD1L1  polycystin 1 like 1, transient receptor potential channel interacting  LOC106559833  uncharacterized LOC106559833  Data merged from RGD:12103499 737654 PROVISIONAL