OR6C33 (olfactory receptor family 6 subfamily C member 33) - Rat Genome Database

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Gene: OR6C33 (olfactory receptor family 6 subfamily C member 33) Canis lupus familiaris
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Symbol: OR6C33
Name: olfactory receptor family 6 subfamily C member 33
RGD ID: 12338607
Description: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: cOR6C33; cOR6C33 olfactory receptor family 6 subfamily C-like; olfactory receptor 6C4
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.127122,143 - 191,844 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl27122,143 - 123,087 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2746,157,297 - 46,158,244 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.027127,042 - 196,135 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl27127,042 - 127,986 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.127121,335 - 122,282 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.027122,984 - 123,931 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02746,538,504 - 46,539,451 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14962662   PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in OR6C33
1785 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium
Low 4 10 8
Below cutoff 3 1 7 1 1 2 5 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000010201   ⟹   ENSCAFP00000035190
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl27122,143 - 123,087 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845053232   ⟹   ENSCAFP00845041800
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl27127,042 - 127,986 (-)Ensembl
RefSeq Acc Id: NM_001388752   ⟹   NP_001375681
RefSeq Status: INFERRED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2746,157,297 - 46,158,244 (+)NCBI
ROS_Cfam_1.027127,042 - 127,989 (-)NCBI
UMICH_Zoey_3.127121,335 - 122,282 (-)NCBI
UNSW_CanFamBas_1.027122,984 - 123,931 (-)NCBI
UU_Cfam_GSD_1.02746,538,504 - 46,539,451 (+)NCBI
RefSeq Acc Id: XM_038437776   ⟹   XP_038293704
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.027127,042 - 196,091 (-)NCBI
RefSeq Acc Id: XM_038437777   ⟹   XP_038293705
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.027127,042 - 196,094 (-)NCBI
RefSeq Acc Id: XM_038437778   ⟹   XP_038293706
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.027127,042 - 196,135 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000035190   ⟸   ENSCAFT00000010201
RefSeq Acc Id: NP_001375681   ⟸   NM_001388752
- UniProtKB: A0A8I3SCI9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038293706   ⟸   XM_038437778
- Peptide Label: isoform X1
- UniProtKB: A0A8I3SCI9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038293705   ⟸   XM_038437777
- Peptide Label: isoform X1
- UniProtKB: A0A8I3SCI9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038293704   ⟸   XM_038437776
- Peptide Label: isoform X1
- UniProtKB: A0A8I3SCI9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845041800   ⟸   ENSCAFT00845053232
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000006304 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030019205 UniProtKB/TrEMBL
  ENSCAFG00040017798 UniProtKB/TrEMBL
  ENSCAFG00845030051 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000010201.5 UniProtKB/TrEMBL
  ENSCAFT00030035301.1 UniProtKB/TrEMBL
  ENSCAFT00040032854.1 UniProtKB/TrEMBL
  ENSCAFT00845053232 ENTREZGENE
  ENSCAFT00845053232.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
  Olfact_rcpt_6C-like UniProtKB/TrEMBL
NCBI Gene cOR6C33 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8C0NQN1_CANLF UniProtKB/TrEMBL
  A0A8I3SCI9 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A8P0SR04 UniProtKB/TrEMBL
VGNC ID VGNC:97011 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-02-11 OR6C33  olfactory receptor family 6 subfamily C member 33  cOR6C33  cOR6C33 olfactory receptor family 6 subfamily C-like  Symbol and/or name change 5135510 APPROVED