MIR339-1 (microRNA mir-339-1) - Rat Genome Database

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Gene: MIR339-1 (microRNA mir-339-1) Canis lupus familiaris
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Symbol: MIR339-1 (Ensembl: MIR339)
Name: microRNA mir-339-1 (Ensembl:microRNA 339)
RGD ID: 12338425
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: cfa-mir-339-1; microRNA 339-1
RGD Orthologs
Human
Mouse
Rat
Pig
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1615,853,520 - 15,853,577 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl615,853,520 - 15,853,577 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha617,326,652 - 17,326,709 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0615,984,276 - 15,984,333 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl615,984,276 - 15,984,333 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1615,787,142 - 15,787,199 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0615,713,678 - 15,713,735 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0616,001,866 - 16,001,923 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
RISC complex  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:16381832   PMID:18392026   PMID:24692655  


Genomics

Comparative Map Data
MIR339-1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1615,853,520 - 15,853,577 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl615,853,520 - 15,853,577 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha617,326,652 - 17,326,709 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0615,984,276 - 15,984,333 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl615,984,276 - 15,984,333 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1615,787,142 - 15,787,199 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0615,713,678 - 15,713,735 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0616,001,866 - 16,001,923 (+)NCBIUU_Cfam_GSD_1.0
MIR339
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3871,022,933 - 1,023,026 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl71,022,933 - 1,023,026 (-)EnsemblGRCh38hg38GRCh38
GRCh3771,062,569 - 1,062,662 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3671,029,094 - 1,029,187 (-)NCBINCBI36Build 36hg18NCBI36
Celera71,030,508 - 1,030,601 (-)NCBICelera
Cytogenetic Map7p22.3NCBI
HuRef7978,263 - 978,356 (-)NCBIHuRef
CHM1_171,060,923 - 1,061,016 (-)NCBICHM1_1
T2T-CHM13v2.071,127,929 - 1,128,022 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v271,117,456 - 1,117,546 (-)NCBI
Mir339
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395139,355,405 - 139,355,500 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5139,355,405 - 139,355,500 (-)EnsemblGRCm39 Ensembl
GRCm385139,369,650 - 139,369,745 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5139,369,650 - 139,369,745 (-)EnsemblGRCm38mm10GRCm38
MGSCv375139,845,604 - 139,845,699 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera5136,423,656 - 136,423,751 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map578.47NCBI
Mir339
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81220,391,395 - 20,391,490 (+)NCBIGRCr8
mRatBN7.21215,277,546 - 15,277,641 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1215,277,546 - 15,277,641 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1216,087,416 - 16,087,511 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01216,711,154 - 16,711,249 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01215,737,416 - 15,737,511 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01217,369,002 - 17,369,097 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1217,369,002 - 17,369,097 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01219,355,865 - 19,355,960 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1217,031,514 - 17,031,609 (+)NCBICelera
Cytogenetic Map12q11NCBI
MIR339-1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3666,918 - 666,997 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13666,918 - 666,997 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23726,710 - 726,789 (+)NCBISscrofa10.2Sscrofa10.2susScr3


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 7 3 2 10
Low 5 5 15 6 3 6 6 6 10 8 6
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000039945
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl615,853,520 - 15,853,577 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845015288
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl615,984,276 - 15,984,333 (+)Ensembl
RefSeq Acc Id: NR_128723
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1615,853,520 - 15,853,577 (+)NCBI
Dog10K_Boxer_Tasha617,326,652 - 17,326,709 (+)NCBI
ROS_Cfam_1.0615,984,276 - 15,984,333 (+)NCBI
UMICH_Zoey_3.1615,787,142 - 15,787,199 (+)NCBI
UNSW_CanFamBas_1.0615,713,678 - 15,713,735 (+)NCBI
UU_Cfam_GSD_1.0616,001,866 - 16,001,923 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000025662 Ensembl
  ENSCAFG00845008697 Ensembl, ENTREZGENE
Ensembl Transcript ENSCAFT00845015288 ENTREZGENE
miRBase MI0008115 ENTREZGENE
NCBI Gene MIR339-1 ENTREZGENE
RNAcentral URS00007E3426 RNACentral
  URS00007E3AD5 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 MIR339-1  microRNA mir-339-1    microRNA 339-1  Symbol and/or name change 5135510 APPROVED