CALN1 (calneuron 1) - Rat Genome Database

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Gene: CALN1 (calneuron 1) Canis lupus familiaris
Analyze
Symbol: CALN1
Name: calneuron 1
RGD ID: 12337443
Description: ENCODES a protein that exhibits calcium ion binding (inferred); metal ion binding (inferred); ASSOCIATED WITH genetic disease (ortholog); Multiple Congenital Anomalies/Dysmorphic Syndrome-Intellectual Disability (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN cytoplasm (inferred); Golgi apparatus (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: calcium-binding protein 8
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.161,545,151 - 2,067,927 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl61,556,003 - 2,067,352 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha63,244,577 - 3,773,112 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.061,356,619 - 1,878,362 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl61,367,490 - 1,878,353 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.161,285,832 - 1,814,587 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.061,293,382 - 1,820,418 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.061,465,357 - 1,994,422 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
CALN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.161,545,151 - 2,067,927 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl61,556,003 - 2,067,352 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha63,244,577 - 3,773,112 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.061,356,619 - 1,878,362 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl61,367,490 - 1,878,353 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.161,285,832 - 1,814,587 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.061,293,382 - 1,820,418 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.061,465,357 - 1,994,422 (+)NCBIUU_Cfam_GSD_1.0
CALN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38771,779,491 - 72,504,279 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl771,779,491 - 72,447,151 (-)EnsemblGRCh38hg38GRCh38
GRCh37771,244,476 - 71,912,128 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36770,882,412 - 71,515,296 (-)NCBINCBI36Build 36hg18NCBI36
Build 34770,692,565 - 71,356,697NCBI
Celera764,619,023 - 65,251,883 (-)NCBICelera
Cytogenetic Map7q11.22NCBI
HuRef767,413,680 - 68,045,799 (-)NCBIHuRef
CHM1_1771,338,794 - 71,972,776 (-)NCBICHM1_1
T2T-CHM13v2.0772,996,291 - 73,722,754 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2770,577,428 - 71,210,210 (-)NCBI
Caln1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395130,398,245 - 130,876,253 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5130,398,296 - 130,876,253 (+)EnsemblGRCm39 Ensembl
GRCm385130,369,404 - 130,846,325 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5130,369,455 - 130,847,412 (+)EnsemblGRCm38mm10GRCm38
MGSCv375130,845,328 - 131,316,515 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365130,733,504 - 131,124,904 (+)NCBIMGSCv36mm8
Celera5127,382,573 - 127,853,118 (+)NCBICelera
Cytogenetic Map5G1.3- G2NCBI
cM Map569.29NCBI
Caln1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81231,447,964 - 31,939,847 (-)NCBIGRCr8
mRatBN7.21225,811,743 - 26,303,670 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1225,819,628 - 26,303,344 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1226,965,639 - 27,399,677 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01227,576,121 - 28,010,201 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01226,636,702 - 27,071,428 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01229,307,117 - 29,796,996 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1229,308,341 - 29,743,705 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01231,251,402 - 31,733,594 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41226,860,409 - 27,287,503 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11226,723,371 - 27,193,845 (-)NCBI
Celera1227,542,062 - 27,969,078 (-)NCBICelera
Cytogenetic Map12q12NCBI
Caln1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554569,079,917 - 9,543,754 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554569,079,917 - 9,547,459 (+)NCBIChiLan1.0ChiLan1.0
CALN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2692,121,039 - 92,783,896 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17140,385,673 - 141,048,531 (+)NCBINHGRI_mPanPan1
PanPan1.1779,659,066 - 80,324,368 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl779,667,347 - 80,280,077 (-)Ensemblpanpan1.1panPan2
Caln1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344126,873,811 - 127,223,088 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365436,820,362 - 7,135,207 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365436,813,479 - 7,054,644 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CALN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1282,846,868 - 3,578,564 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607013,019,544 - 13,761,534 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Caln1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247409,088,443 - 9,581,642 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247409,049,512 - 9,589,028 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CALN1
4328 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 6 6 1
Low 10 5 6 8 4
Below cutoff 5 5 6 6 6 6 6 1 5 6

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003434742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005620933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005620935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014114152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014114153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022419528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038477768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038477769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038477770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038477772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038477773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038477774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038477775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038477776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038477777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038477778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038477779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038535980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038535995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038536016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038536022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038536034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038539012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038539013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038539014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038539015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038539016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038539017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038539018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038539019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038539020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038539021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038539022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038603105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038603106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038603107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038603108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038603109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038603110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038603111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038603112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038603113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038603114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038603115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038667811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038667812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038667813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038667814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038667815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038667816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038667817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038667818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038667819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038667820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038667821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000017682   ⟹   ENSCAFP00000016370
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl61,556,003 - 2,067,352 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000062059   ⟹   ENSCAFP00000045428
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl61,556,003 - 2,056,392 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845001678   ⟹   ENSCAFP00845001323
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl61,367,490 - 1,878,353 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845001683   ⟹   ENSCAFP00845001329
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl61,466,626 - 1,878,353 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845001702   ⟹   ENSCAFP00845001345
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl61,466,626 - 1,866,807 (+)Ensembl
RefSeq Acc Id: XM_003434742   ⟹   XP_003434790
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.161,555,944 - 2,067,927 (+)NCBI
Dog10K_Boxer_Tasha63,255,280 - 3,773,112 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005620933   ⟹   XP_005620990
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.161,555,937 - 2,067,927 (+)NCBI
Dog10K_Boxer_Tasha63,255,272 - 3,773,112 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005620935   ⟹   XP_005620992
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.161,657,151 - 2,067,927 (+)NCBI
Dog10K_Boxer_Tasha63,356,084 - 3,773,112 (+)NCBI
Sequence:
RefSeq Acc Id: XM_014114152   ⟹   XP_013969627
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.161,545,151 - 2,067,927 (+)NCBI
Dog10K_Boxer_Tasha63,244,577 - 3,773,112 (+)NCBI
Sequence:
RefSeq Acc Id: XM_014114153   ⟹   XP_013969628
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.161,654,708 - 2,067,927 (+)NCBI
Dog10K_Boxer_Tasha63,353,707 - 3,773,112 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022419528   ⟹   XP_022275236
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.161,691,128 - 2,067,927 (+)NCBI
Dog10K_Boxer_Tasha63,390,098 - 3,773,112 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038477768   ⟹   XP_038333696
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.161,296,740 - 1,814,587 (+)NCBI
RefSeq Acc Id: XM_038477769   ⟹   XP_038333697
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.161,285,832 - 1,814,587 (+)NCBI
RefSeq Acc Id: XM_038477770   ⟹   XP_038333698
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.161,431,666 - 1,814,585 (+)NCBI
RefSeq Acc Id: XM_038477772   ⟹   XP_038333700
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.161,396,733 - 1,814,585 (+)NCBI
RefSeq Acc Id: XM_038477773   ⟹   XP_038333701
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.161,397,619 - 1,814,585 (+)NCBI
RefSeq Acc Id: XM_038477774   ⟹   XP_038333702
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.161,397,384 - 1,814,585 (+)NCBI
RefSeq Acc Id: XM_038477775   ⟹   XP_038333703
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.161,296,748 - 1,814,585 (+)NCBI
RefSeq Acc Id: XM_038477776   ⟹   XP_038333704
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.161,395,246 - 1,814,585 (+)NCBI
RefSeq Acc Id: XM_038477777   ⟹   XP_038333705
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.161,395,525 - 1,814,585 (+)NCBI
RefSeq Acc Id: XM_038477778   ⟹   XP_038333706
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.161,296,722 - 1,795,543 (+)NCBI
RefSeq Acc Id: XM_038477779   ⟹   XP_038333707
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.161,296,722 - 1,637,141 (+)NCBI
RefSeq Acc Id: XM_038535980   ⟹   XP_038391908
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha63,355,211 - 3,773,112 (+)NCBI
RefSeq Acc Id: XM_038535995   ⟹   XP_038391923
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha63,355,862 - 3,773,112 (+)NCBI
RefSeq Acc Id: XM_038536016   ⟹   XP_038391944
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha63,353,985 - 3,773,112 (+)NCBI
RefSeq Acc Id: XM_038536022   ⟹   XP_038391950
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha63,255,254 - 3,754,084 (+)NCBI
RefSeq Acc Id: XM_038536034   ⟹   XP_038391962
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha63,255,254 - 3,595,522 (+)NCBI
RefSeq Acc Id: XM_038539012   ⟹   XP_038394940
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.061,476,055 - 1,994,422 (+)NCBI
RefSeq Acc Id: XM_038539013   ⟹   XP_038394941
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.061,465,357 - 1,994,422 (+)NCBI
RefSeq Acc Id: XM_038539014   ⟹   XP_038394942
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.061,611,302 - 1,994,422 (+)NCBI
RefSeq Acc Id: XM_038539015   ⟹   XP_038394943
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.061,576,400 - 1,994,422 (+)NCBI
RefSeq Acc Id: XM_038539016   ⟹   XP_038394944
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.061,577,285 - 1,994,422 (+)NCBI
RefSeq Acc Id: XM_038539017   ⟹   XP_038394945
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.061,577,063 - 1,994,422 (+)NCBI
RefSeq Acc Id: XM_038539018   ⟹   XP_038394946
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.061,476,063 - 1,994,422 (+)NCBI
RefSeq Acc Id: XM_038539019   ⟹   XP_038394947
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.061,574,884 - 1,994,422 (+)NCBI
RefSeq Acc Id: XM_038539020   ⟹   XP_038394948
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.061,575,162 - 1,994,422 (+)NCBI
RefSeq Acc Id: XM_038539021   ⟹   XP_038394949
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.061,476,037 - 1,975,369 (+)NCBI
RefSeq Acc Id: XM_038539022   ⟹   XP_038394950
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.061,476,037 - 1,816,804 (+)NCBI
RefSeq Acc Id: XM_038603105   ⟹   XP_038459033
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.061,304,121 - 1,820,418 (+)NCBI
RefSeq Acc Id: XM_038603106   ⟹   XP_038459034
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.061,293,382 - 1,820,418 (+)NCBI
RefSeq Acc Id: XM_038603107   ⟹   XP_038459035
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.061,439,280 - 1,820,418 (+)NCBI
RefSeq Acc Id: XM_038603108   ⟹   XP_038459036
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.061,404,399 - 1,820,418 (+)NCBI
RefSeq Acc Id: XM_038603109   ⟹   XP_038459037
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.061,405,274 - 1,820,418 (+)NCBI
RefSeq Acc Id: XM_038603110   ⟹   XP_038459038
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.061,405,052 - 1,820,418 (+)NCBI
RefSeq Acc Id: XM_038603111   ⟹   XP_038459039
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.061,304,129 - 1,820,418 (+)NCBI
RefSeq Acc Id: XM_038603112   ⟹   XP_038459040
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.061,402,909 - 1,820,418 (+)NCBI
RefSeq Acc Id: XM_038603113   ⟹   XP_038459041
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.061,403,187 - 1,820,418 (+)NCBI
RefSeq Acc Id: XM_038603114   ⟹   XP_038459042
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.061,304,103 - 1,807,832 (+)NCBI
RefSeq Acc Id: XM_038603115   ⟹   XP_038459043
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.061,304,103 - 1,644,782 (+)NCBI
RefSeq Acc Id: XM_038667811   ⟹   XP_038523739
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.061,367,359 - 1,878,362 (+)NCBI
RefSeq Acc Id: XM_038667812   ⟹   XP_038523740
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.061,356,619 - 1,878,362 (+)NCBI
RefSeq Acc Id: XM_038667813   ⟹   XP_038523741
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.061,502,323 - 1,878,362 (+)NCBI
RefSeq Acc Id: XM_038667814   ⟹   XP_038523742
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.061,467,405 - 1,878,362 (+)NCBI
RefSeq Acc Id: XM_038667815   ⟹   XP_038523743
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.061,468,314 - 1,878,362 (+)NCBI
RefSeq Acc Id: XM_038667816   ⟹   XP_038523744
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.061,468,067 - 1,878,362 (+)NCBI
RefSeq Acc Id: XM_038667817   ⟹   XP_038523745
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.061,367,367 - 1,878,362 (+)NCBI
RefSeq Acc Id: XM_038667818   ⟹   XP_038523746
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.061,465,900 - 1,878,362 (+)NCBI
RefSeq Acc Id: XM_038667819   ⟹   XP_038523747
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.061,466,179 - 1,878,362 (+)NCBI
RefSeq Acc Id: XM_038667820   ⟹   XP_038523748
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.061,367,341 - 1,865,741 (+)NCBI
RefSeq Acc Id: XM_038667821   ⟹   XP_038523749
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.061,367,341 - 1,708,295 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003434790 (Get FASTA)   NCBI Sequence Viewer  
  XP_005620990 (Get FASTA)   NCBI Sequence Viewer  
  XP_005620992 (Get FASTA)   NCBI Sequence Viewer  
  XP_013969627 (Get FASTA)   NCBI Sequence Viewer  
  XP_013969628 (Get FASTA)   NCBI Sequence Viewer  
  XP_022275236 (Get FASTA)   NCBI Sequence Viewer  
  XP_038333696 (Get FASTA)   NCBI Sequence Viewer  
  XP_038333697 (Get FASTA)   NCBI Sequence Viewer  
  XP_038333698 (Get FASTA)   NCBI Sequence Viewer  
  XP_038333700 (Get FASTA)   NCBI Sequence Viewer  
  XP_038333701 (Get FASTA)   NCBI Sequence Viewer  
  XP_038333702 (Get FASTA)   NCBI Sequence Viewer  
  XP_038333703 (Get FASTA)   NCBI Sequence Viewer  
  XP_038333704 (Get FASTA)   NCBI Sequence Viewer  
  XP_038333705 (Get FASTA)   NCBI Sequence Viewer  
  XP_038333706 (Get FASTA)   NCBI Sequence Viewer  
  XP_038333707 (Get FASTA)   NCBI Sequence Viewer  
  XP_038391908 (Get FASTA)   NCBI Sequence Viewer  
  XP_038391923 (Get FASTA)   NCBI Sequence Viewer  
  XP_038391944 (Get FASTA)   NCBI Sequence Viewer  
  XP_038391950 (Get FASTA)   NCBI Sequence Viewer  
  XP_038391962 (Get FASTA)   NCBI Sequence Viewer  
  XP_038394940 (Get FASTA)   NCBI Sequence Viewer  
  XP_038394941 (Get FASTA)   NCBI Sequence Viewer  
  XP_038394942 (Get FASTA)   NCBI Sequence Viewer  
  XP_038394943 (Get FASTA)   NCBI Sequence Viewer  
  XP_038394944 (Get FASTA)   NCBI Sequence Viewer  
  XP_038394945 (Get FASTA)   NCBI Sequence Viewer  
  XP_038394946 (Get FASTA)   NCBI Sequence Viewer  
  XP_038394947 (Get FASTA)   NCBI Sequence Viewer  
  XP_038394948 (Get FASTA)   NCBI Sequence Viewer  
  XP_038394949 (Get FASTA)   NCBI Sequence Viewer  
  XP_038394950 (Get FASTA)   NCBI Sequence Viewer  
  XP_038459033 (Get FASTA)   NCBI Sequence Viewer  
  XP_038459034 (Get FASTA)   NCBI Sequence Viewer  
  XP_038459035 (Get FASTA)   NCBI Sequence Viewer  
  XP_038459036 (Get FASTA)   NCBI Sequence Viewer  
  XP_038459037 (Get FASTA)   NCBI Sequence Viewer  
  XP_038459038 (Get FASTA)   NCBI Sequence Viewer  
  XP_038459039 (Get FASTA)   NCBI Sequence Viewer  
  XP_038459040 (Get FASTA)   NCBI Sequence Viewer  
  XP_038459041 (Get FASTA)   NCBI Sequence Viewer  
  XP_038459042 (Get FASTA)   NCBI Sequence Viewer  
  XP_038459043 (Get FASTA)   NCBI Sequence Viewer  
  XP_038523739 (Get FASTA)   NCBI Sequence Viewer  
  XP_038523740 (Get FASTA)   NCBI Sequence Viewer  
  XP_038523741 (Get FASTA)   NCBI Sequence Viewer  
  XP_038523742 (Get FASTA)   NCBI Sequence Viewer  
  XP_038523743 (Get FASTA)   NCBI Sequence Viewer  
  XP_038523744 (Get FASTA)   NCBI Sequence Viewer  
  XP_038523745 (Get FASTA)   NCBI Sequence Viewer  
  XP_038523746 (Get FASTA)   NCBI Sequence Viewer  
  XP_038523747 (Get FASTA)   NCBI Sequence Viewer  
  XP_038523748 (Get FASTA)   NCBI Sequence Viewer  
  XP_038523749 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000016370.4
  ENSCAFP00000045428.1
  ENSCAFP00000068482.1
  ENSCAFP00030027291.1
  ENSCAFP00030027345.1
  ENSCAFP00040010944.1
  ENSCAFP00040010962.1
  ENSCAFP00040010981.1
  ENSCAFP00845001323
  ENSCAFP00845001323.1
  ENSCAFP00845001329.1
  ENSCAFP00845001345.1
RefSeq Acc Id: XP_013969627   ⟸   XM_014114152
- Peptide Label: isoform X1
- UniProtKB: A0A8C0NIE9 (UniProtKB/TrEMBL),   A0A8I3MHQ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003434790   ⟸   XM_003434742
- Peptide Label: isoform X3
- UniProtKB: A0A8C0JWR9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005620990   ⟸   XM_005620933
- Peptide Label: isoform X1
- UniProtKB: A0A8C0NIE9 (UniProtKB/TrEMBL),   A0A8I3MHQ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013969628   ⟸   XM_014114153
- Peptide Label: isoform X3
- UniProtKB: A0A8C0JWR9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005620992   ⟸   XM_005620935
- Peptide Label: isoform X3
- UniProtKB: A0A8C0JWR9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022275236   ⟸   XM_022419528
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCAFP00000016370   ⟸   ENSCAFT00000017682
RefSeq Acc Id: ENSCAFP00000045428   ⟸   ENSCAFT00000062059
RefSeq Acc Id: XP_038333697   ⟸   XM_038477769
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038333706   ⟸   XM_038477778
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038333707   ⟸   XM_038477779
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038333696   ⟸   XM_038477768
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038333703   ⟸   XM_038477775
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038333704   ⟸   XM_038477776
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038333705   ⟸   XM_038477777
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038333700   ⟸   XM_038477772
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038333702   ⟸   XM_038477774
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038333701   ⟸   XM_038477773
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038333698   ⟸   XM_038477770
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038459034   ⟸   XM_038603106
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038459042   ⟸   XM_038603114
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038459043   ⟸   XM_038603115
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038459033   ⟸   XM_038603105
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038459039   ⟸   XM_038603111
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038459040   ⟸   XM_038603112
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038459041   ⟸   XM_038603113
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038459036   ⟸   XM_038603108
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038459038   ⟸   XM_038603110
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038459037   ⟸   XM_038603109
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038459035   ⟸   XM_038603107
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038523740   ⟸   XM_038667812
- Peptide Label: isoform X1
- UniProtKB: A0A8C0NIE9 (UniProtKB/TrEMBL),   A0A8I3MHQ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038523748   ⟸   XM_038667820
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038523749   ⟸   XM_038667821
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038523739   ⟸   XM_038667811
- Peptide Label: isoform X1
- UniProtKB: A0A8C0NIE9 (UniProtKB/TrEMBL),   A0A8I3MHQ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038523745   ⟸   XM_038667817
- Peptide Label: isoform X3
- UniProtKB: A0A8C0JWR9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038523746   ⟸   XM_038667818
- Peptide Label: isoform X3
- UniProtKB: A0A8C0JWR9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038523747   ⟸   XM_038667819
- Peptide Label: isoform X3
- UniProtKB: A0A8C0JWR9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038523742   ⟸   XM_038667814
- Peptide Label: isoform X3
- UniProtKB: A0A8C0JWR9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038523744   ⟸   XM_038667816
- Peptide Label: isoform X3
- UniProtKB: A0A8C0JWR9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038523743   ⟸   XM_038667815
- Peptide Label: isoform X3
- UniProtKB: A0A8C0JWR9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038523741   ⟸   XM_038667813
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038391950   ⟸   XM_038536022
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038391962   ⟸   XM_038536034
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038391944   ⟸   XM_038536016
- Peptide Label: isoform X3
- UniProtKB: A0A8C0JWR9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038391908   ⟸   XM_038535980
- Peptide Label: isoform X3
- UniProtKB: A0A8C0JWR9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038391923   ⟸   XM_038535995
- Peptide Label: isoform X3
- UniProtKB: A0A8C0JWR9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038394941   ⟸   XM_038539013
- Peptide Label: isoform X1
- UniProtKB: A0A8C0NIE9 (UniProtKB/TrEMBL),   A0A8I3MHQ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038394949   ⟸   XM_038539021
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038394950   ⟸   XM_038539022
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038394940   ⟸   XM_038539012
- Peptide Label: isoform X1
- UniProtKB: A0A8C0NIE9 (UniProtKB/TrEMBL),   A0A8I3MHQ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038394946   ⟸   XM_038539018
- Peptide Label: isoform X3
- UniProtKB: A0A8C0JWR9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038394947   ⟸   XM_038539019
- Peptide Label: isoform X3
- UniProtKB: A0A8C0JWR9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038394948   ⟸   XM_038539020
- Peptide Label: isoform X3
- UniProtKB: A0A8C0JWR9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038394943   ⟸   XM_038539015
- Peptide Label: isoform X3
- UniProtKB: A0A8C0JWR9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038394945   ⟸   XM_038539017
- Peptide Label: isoform X3
- UniProtKB: A0A8C0JWR9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038394944   ⟸   XM_038539016
- Peptide Label: isoform X3
- UniProtKB: A0A8C0JWR9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038394942   ⟸   XM_038539014
- Peptide Label: isoform X2
RefSeq Acc Id: ENSCAFP00845001323   ⟸   ENSCAFT00845001678
RefSeq Acc Id: ENSCAFP00845001329   ⟸   ENSCAFT00845001683
RefSeq Acc Id: ENSCAFP00845001345   ⟸   ENSCAFT00845001702
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000011106 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030016931 UniProtKB/TrEMBL
  ENSCAFG00040006742 UniProtKB/TrEMBL
  ENSCAFG00845000984 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000017682.5 UniProtKB/TrEMBL
  ENSCAFT00000062059.2 UniProtKB/TrEMBL
  ENSCAFT00000095723.1 UniProtKB/TrEMBL
  ENSCAFT00030031269.1 UniProtKB/TrEMBL
  ENSCAFT00030031332.1 UniProtKB/TrEMBL
  ENSCAFT00040012626.1 UniProtKB/TrEMBL
  ENSCAFT00040012647.1 UniProtKB/TrEMBL
  ENSCAFT00040012668.1 UniProtKB/TrEMBL
  ENSCAFT00845001678 ENTREZGENE
  ENSCAFT00845001678.1 UniProtKB/TrEMBL
  ENSCAFT00845001683.1 UniProtKB/TrEMBL
  ENSCAFT00845001702.1 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  S100/CaBP-9k_CS UniProtKB/TrEMBL
NCBI Gene CALN1 ENTREZGENE
PANTHER CALCIUM-BINDING PROTEIN 8 UniProtKB/TrEMBL
  CALCIUM-BINDING PROTEIN 8-RELATED UniProtKB/TrEMBL
Pfam EF-hand_7 UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
  S100_CABP UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A8C0JWR9 ENTREZGENE
  A0A8C0NHR1_CANLF UniProtKB/TrEMBL
  A0A8C0NIE9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0Q9V8_CANLF UniProtKB/TrEMBL
  A0A8C0QAK6_CANLF UniProtKB/TrEMBL
  A0A8I3MCQ7_CANLF UniProtKB/TrEMBL
  A0A8I3MHQ6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MJ99_CANLF UniProtKB/TrEMBL
  A0A8P0NVP0_CANLF UniProtKB/TrEMBL
  A0A8P0SG01_CANLF UniProtKB/TrEMBL
  A0A8P0TKA1_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:38674 ENTREZGENE