CA13 (carbonic anhydrase 13) - Rat Genome Database

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Gene: CA13 (carbonic anhydrase 13) Canis lupus familiaris
Analyze
Symbol: CA13
Name: carbonic anhydrase 13
RGD ID: 12337358
Description: ENCODES a protein that exhibits carbonate dehydratase activity (inferred); zinc ion binding (inferred); FOUND IN cytosol (inferred); intracellular membrane-bounded organelle (inferred); myelin sheath (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12931,784,614 - 31,833,429 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2931,782,680 - 31,850,405 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2932,067,124 - 32,112,791 (+)NCBI
ROS_Cfam_1.02931,932,517 - 31,980,427 (+)NCBI
UMICH_Zoey_3.12931,988,167 - 32,033,742 (+)NCBI
UNSW_CanFamBas_1.02932,006,949 - 32,052,786 (+)NCBI
UU_Cfam_GSD_1.02932,390,753 - 32,439,552 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
CA13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12931,784,614 - 31,833,429 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2931,782,680 - 31,850,405 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2932,067,124 - 32,112,791 (+)NCBI
ROS_Cfam_1.02931,932,517 - 31,980,427 (+)NCBI
UMICH_Zoey_3.12931,988,167 - 32,033,742 (+)NCBI
UNSW_CanFamBas_1.02932,006,949 - 32,052,786 (+)NCBI
UU_Cfam_GSD_1.02932,390,753 - 32,439,552 (+)NCBI
CA13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl885,220,587 - 85,284,073 (+)EnsemblGRCh38hg38GRCh38
GRCh38885,245,458 - 85,284,073 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37886,157,687 - 86,196,302 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36886,345,259 - 86,383,554 (+)NCBINCBI36hg18NCBI36
Build 34886,345,258 - 86,383,554NCBI
Celera882,162,764 - 82,201,350 (+)NCBI
Cytogenetic Map8q21.2NCBI
HuRef881,651,766 - 81,690,497 (+)NCBIHuRef
CHM1_1886,209,312 - 86,248,027 (+)NCBICHM1_1
Car13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39314,706,787 - 14,728,062 (+)NCBIGRCm39mm39
GRCm39 Ensembl314,706,787 - 14,728,062 (+)Ensembl
GRCm38314,641,727 - 14,663,002 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl314,641,727 - 14,663,002 (+)EnsemblGRCm38mm10GRCm38
MGSCv37314,641,727 - 14,663,002 (+)NCBIGRCm37mm9NCBIm37
MGSCv36314,618,518 - 14,639,139 (+)NCBImm8
Celera314,649,523 - 14,670,798 (+)NCBICelera
Cytogenetic Map3A1NCBI
Ca13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2286,928,401 - 86,959,525 (-)NCBI
Rnor_6.0 Ensembl288,282,961 - 88,314,254 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0288,282,961 - 88,314,254 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02108,055,053 - 108,086,130 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4288,271,908 - 88,309,336 (-)NCBIRGSC3.4rn4RGSC3.4
Celera282,519,345 - 82,549,951 (-)NCBICelera
Cytogenetic Map2q23NCBI
Ca13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554173,194,501 - 3,219,755 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554173,194,961 - 3,219,019 (+)NCBIChiLan1.0ChiLan1.0
CA13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1883,381,011 - 83,419,335 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl883,381,011 - 83,419,446 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0881,770,852 - 81,809,750 (+)NCBIMhudiblu_PPA_v0panPan3
Ca13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530347,586,067 - 47,615,381 (-)NCBI
SpeTri2.0NW_004936544177,336 - 206,638 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CA13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl451,407,473 - 51,468,961 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1451,406,755 - 51,468,971 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2456,422,548 - 56,483,985 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CA13
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1880,617,375 - 80,654,408 (+)NCBI
ChlSab1.1 Ensembl880,617,898 - 80,651,692 (+)Ensembl
Ca13
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247446,418,487 - 6,447,023 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 6 8 10 6
Low 5 12 2 6 2 12
Below cutoff 5 4 4 6

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_014109327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038441522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038441523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038516090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038579665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038643906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001314884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001314885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002620971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005304357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005304358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005304359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005347407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005347408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005347409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005381177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005381178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005381179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005414983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005414985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005414986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000050010   ⟹   ENSCAFP00000037641
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2931,784,597 - 31,821,767 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000073384   ⟹   ENSCAFP00000045078
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2931,782,680 - 31,821,767 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000083212   ⟹   ENSCAFP00000044932
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2931,784,597 - 31,819,650 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000083338   ⟹   ENSCAFP00000053866
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2931,784,597 - 31,850,405 (+)Ensembl
RefSeq Acc Id: XM_014109327   ⟹   XP_013964802
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12931,784,614 - 31,821,403 (+)NCBI
Dog10K_Boxer_Tasha2932,067,124 - 32,100,775 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038441522   ⟹   XP_038297450
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02931,932,517 - 31,968,206 (+)NCBI
RefSeq Acc Id: XM_038441523   ⟹   XP_038297451
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02931,934,535 - 31,968,206 (+)NCBI
RefSeq Acc Id: XM_038516090   ⟹   XP_038372018
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12931,988,167 - 32,021,759 (+)NCBI
RefSeq Acc Id: XM_038579665   ⟹   XP_038435593
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02932,390,753 - 32,427,526 (+)NCBI
RefSeq Acc Id: XM_038643906   ⟹   XP_038499834
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02932,006,949 - 32,040,587 (+)NCBI
RefSeq Acc Id: XR_001314884
RefSeq Status:
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12931,784,614 - 31,833,427 (+)NCBI
Dog10K_Boxer_Tasha2932,067,124 - 32,112,789 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001314885
RefSeq Status:
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12931,784,614 - 31,821,922 (+)NCBI
Dog10K_Boxer_Tasha2932,067,124 - 32,101,293 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002620971
RefSeq Status:
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12931,784,614 - 31,833,429 (+)NCBI
Dog10K_Boxer_Tasha2932,067,124 - 32,112,791 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005304357
RefSeq Status:
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02931,932,517 - 31,980,427 (+)NCBI
RefSeq Acc Id: XR_005304358
RefSeq Status:
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02931,932,517 - 31,968,724 (+)NCBI
RefSeq Acc Id: XR_005304359
RefSeq Status:
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02931,932,517 - 31,980,424 (+)NCBI
RefSeq Acc Id: XR_005347407
RefSeq Status:
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12931,988,167 - 32,033,742 (+)NCBI
RefSeq Acc Id: XR_005347408
RefSeq Status:
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12931,988,167 - 32,022,335 (+)NCBI
RefSeq Acc Id: XR_005347409
RefSeq Status:
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12931,988,167 - 32,033,740 (+)NCBI
RefSeq Acc Id: XR_005381177
RefSeq Status:
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02932,390,753 - 32,439,552 (+)NCBI
RefSeq Acc Id: XR_005381178
RefSeq Status:
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02932,390,753 - 32,428,044 (+)NCBI
RefSeq Acc Id: XR_005381179
RefSeq Status:
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02932,390,753 - 32,439,550 (+)NCBI
RefSeq Acc Id: XR_005414983
RefSeq Status:
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02932,006,949 - 32,052,786 (+)NCBI
RefSeq Acc Id: XR_005414985
RefSeq Status:
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02932,006,949 - 32,041,105 (+)NCBI
RefSeq Acc Id: XR_005414986
RefSeq Status:
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02932,006,949 - 32,052,783 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_013964802   ⟸   XM_014109327
- Peptide Label: isoform X1
- UniProtKB: J9NSG2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000037641   ⟸   ENSCAFT00000050010
RefSeq Acc Id: ENSCAFP00000045078   ⟸   ENSCAFT00000073384
RefSeq Acc Id: ENSCAFP00000053866   ⟸   ENSCAFT00000083338
RefSeq Acc Id: ENSCAFP00000044932   ⟸   ENSCAFT00000083212
RefSeq Acc Id: XP_038372018   ⟸   XM_038516090
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038499834   ⟸   XM_038643906
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038297450   ⟸   XM_038441522
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038297451   ⟸   XM_038441523
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038435593   ⟸   XM_038579665
- Peptide Label: isoform X1
Protein Domains
Alpha-carbonic anhydrase

Promoters
RGD ID:13688447
Promoter ID:EPDNEW_C6512
Type:initiation region
Name:CA13_1
Description:carbonic anhydrase 13
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12931,784,628 - 31,784,688EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000030792 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000037641 ENTREZGENE, UniProtKB/TrEMBL
  ENSCAFP00000044932 UniProtKB/TrEMBL
  ENSCAFP00000045078 UniProtKB/TrEMBL
  ENSCAFP00000053866 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000050010 UniProtKB/TrEMBL
  ENSCAFT00000073384 UniProtKB/TrEMBL
  ENSCAFT00000083212 UniProtKB/TrEMBL
  ENSCAFT00000083338 UniProtKB/TrEMBL
Gene3D-CATH 3.10.200.10 UniProtKB/TrEMBL
InterPro Carbonic_anhydrase_a UniProtKB/TrEMBL
  Carbonic_anhydrase_a-class UniProtKB/TrEMBL
  Carbonic_anhydrase_a-class_CS UniProtKB/TrEMBL
  Carbonic_anhydrase_a_sf UniProtKB/TrEMBL
KEGG Report cfa:487030 UniProtKB/TrEMBL
NCBI Gene CA13 ENTREZGENE
PANTHER PTHR18952 UniProtKB/TrEMBL
Pfam Carb_anhydrase UniProtKB/TrEMBL
PROSITE ALPHA_CA_1 UniProtKB/TrEMBL
  ALPHA_CA_2 UniProtKB/TrEMBL
SMART Carb_anhydrase UniProtKB/TrEMBL
Superfamily-SCOP SSF51069 UniProtKB/TrEMBL
UniProt A0A5F4BSZ4_CANLF UniProtKB/TrEMBL
  A0A5F4BW35_CANLF UniProtKB/TrEMBL
  A0A5F4CKE2_CANLF UniProtKB/TrEMBL
  J9NSG2 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:38608 ENTREZGENE