RAB29 (RAB29, member RAS oncogene family) - Rat Genome Database

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Gene: RAB29 (RAB29, member RAS oncogene family) Canis lupus familiaris
Analyze
Symbol: RAB29
Name: RAB29, member RAS oncogene family
RGD ID: 12336515
Description: ENCODES a protein that exhibits dynein complex binding (ortholog); GDP binding (ortholog); GTP binding (ortholog); INVOLVED IN cilium assembly (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); Golgi organization (ortholog); ASSOCIATED WITH autistic disorder (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN cis-Golgi network (ortholog); cytoplasm (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: RAB7, member RAS oncogene family-like 1; RAB7L1; ras-related protein Rab-7L1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1382,196,618 - 2,204,150 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl382,198,040 - 2,203,896 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha382,289,485 - 2,297,013 (-)NCBI
ROS_Cfam_1.0382,193,762 - 2,201,285 (-)NCBI
UMICH_Zoey_3.1382,188,157 - 2,195,683 (-)NCBI
UNSW_CanFamBas_1.0382,579,882 - 2,587,380 (-)NCBI
UU_Cfam_GSD_1.0382,780,284 - 2,787,813 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
RAB29
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1382,196,618 - 2,204,150 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl382,198,040 - 2,203,896 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha382,289,485 - 2,297,013 (-)NCBI
ROS_Cfam_1.0382,193,762 - 2,201,285 (-)NCBI
UMICH_Zoey_3.1382,188,157 - 2,195,683 (-)NCBI
UNSW_CanFamBas_1.0382,579,882 - 2,587,380 (-)NCBI
UU_Cfam_GSD_1.0382,780,284 - 2,787,813 (-)NCBI
RAB29
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1205,767,986 - 205,775,482 (-)EnsemblGRCh38hg38GRCh38
GRCh381205,767,986 - 205,775,487 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371205,737,114 - 205,744,610 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361204,004,301 - 204,010,747 (-)NCBINCBI36hg18NCBI36
Build 341202,469,334 - 202,475,781NCBI
Celera1178,873,347 - 178,880,842 (-)NCBI
Cytogenetic Map1q32.1NCBI
HuRef1176,901,814 - 176,909,309 (-)NCBIHuRef
CHM1_11207,160,617 - 207,168,113 (-)NCBICHM1_1
Rab29
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391131,794,948 - 131,800,625 (+)NCBIGRCm39mm39
GRCm39 Ensembl1131,794,962 - 131,800,625 (+)Ensembl
GRCm381131,867,210 - 131,872,887 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1131,867,224 - 131,872,887 (+)EnsemblGRCm38mm10GRCm38
MGSCv371133,763,854 - 133,769,464 (+)NCBIGRCm37mm9NCBIm37
MGSCv361133,694,838 - 133,700,431 (+)NCBImm8
Celera1134,471,765 - 134,477,377 (+)NCBICelera
Cytogenetic Map1E4NCBI
Rab29
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21343,307,757 - 43,313,420 (+)NCBI
Rnor_6.0 Ensembl1348,644,604 - 48,650,220 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01348,644,575 - 48,650,229 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01353,717,859 - 53,723,127 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1343,645,679 - 43,651,039 (+)NCBICelera
Cytogenetic Map13q13NCBI
Rab29
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540641,462,534 - 41,468,948 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540641,452,733 - 41,468,467 (-)NCBIChiLan1.0ChiLan1.0
RAB29
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11185,661,317 - 185,668,077 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1185,661,317 - 185,668,066 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01181,377,018 - 181,384,496 (-)NCBIMhudiblu_PPA_v0panPan3
Rab29
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934469,432,792 - 69,439,301 (+)NCBI
SpeTri2.0NW_0049365576,673,092 - 6,679,715 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB29
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl966,445,843 - 66,483,838 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1966,448,854 - 66,458,766 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2972,715,501 - 72,725,155 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAB29
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12523,572,001 - 23,579,881 (+)NCBI
ChlSab1.1 Ensembl2523,572,542 - 23,577,695 (+)Ensembl
Vero_WHO_p1.0NW_02366605524,267,454 - 24,276,009 (+)NCBI
Rab29
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248075,478,570 - 5,483,473 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 4 10
Low 5 5 17 6 6 6 2 6 12 8 6
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000016170   ⟹   ENSCAFP00000014955
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl382,198,040 - 2,203,896 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000092430   ⟹   ENSCAFP00000057033
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl382,198,040 - 2,203,896 (-)Ensembl
RefSeq Acc Id: XM_038448331   ⟹   XP_038304259
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0382,193,762 - 2,201,285 (-)NCBI
RefSeq Acc Id: XM_038522251   ⟹   XP_038378179
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1382,188,157 - 2,195,683 (-)NCBI
RefSeq Acc Id: XM_038586052   ⟹   XP_038441980
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0382,780,284 - 2,787,813 (-)NCBI
RefSeq Acc Id: XM_038650456   ⟹   XP_038506384
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0382,579,882 - 2,587,380 (-)NCBI
RefSeq Acc Id: XM_536104   ⟹   XP_536104
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1382,196,618 - 2,204,150 (-)NCBI
Dog10K_Boxer_Tasha382,289,485 - 2,297,013 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_038304259 (Get FASTA)   NCBI Sequence Viewer  
  XP_038378179 (Get FASTA)   NCBI Sequence Viewer  
  XP_038441980 (Get FASTA)   NCBI Sequence Viewer  
  XP_038506384 (Get FASTA)   NCBI Sequence Viewer  
  XP_536104 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_536104   ⟸   XM_536104
- Sequence:
RefSeq Acc Id: ENSCAFP00000057033   ⟸   ENSCAFT00000092430
RefSeq Acc Id: ENSCAFP00000014955   ⟸   ENSCAFT00000016170
RefSeq Acc Id: XP_038378179   ⟸   XM_038522251
RefSeq Acc Id: XP_038506384   ⟸   XM_038650456
RefSeq Acc Id: XP_038304259   ⟸   XM_038448331
RefSeq Acc Id: XP_038441980   ⟸   XM_038586052

Promoters
RGD ID:13689182
Promoter ID:EPDNEW_C7250
Type:initiation region
Name:RAB29_1
Description:RAB29, member RAS oncogene family
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1382,204,133 - 2,204,193EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000010186 Ensembl, ENTREZGENE
NCBI Gene RAB29 ENTREZGENE
VGNC ID VGNC:45270 ENTREZGENE