OR2L17 (olfactory receptor family 2 subfamily L member 17) - Rat Genome Database

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Gene: OR2L17 (olfactory receptor family 2 subfamily L member 17) Canis lupus familiaris
Analyze
Symbol: OR2L17
Name: olfactory receptor family 2 subfamily L member 17
RGD ID: 12333144
Description: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: cOR2L17; cOR2L17 olfactory receptor family 2 subfamily L-like; olfactory receptor 2L3; olfactory receptor OR12A03; OR12A03
RGD Orthologs
Human
Pig
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1141,387,375 - 1,388,310 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl141,387,375 - 1,388,310 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha141,026,999 - 1,027,934 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0141,108,279 - 1,109,214 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl141,108,279 - 1,109,214 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1141,317,702 - 1,318,637 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0141,079,472 - 1,080,407 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0141,067,717 - 1,068,652 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14659017   PMID:14962662   PMID:22301074  


Genomics

Comparative Map Data
OR2L17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1141,387,375 - 1,388,310 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl141,387,375 - 1,388,310 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha141,026,999 - 1,027,934 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0141,108,279 - 1,109,214 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl141,108,279 - 1,109,214 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1141,317,702 - 1,318,637 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0141,079,472 - 1,080,407 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0141,067,717 - 1,068,652 (-)NCBIUU_Cfam_GSD_1.0
OR2L8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381247,948,858 - 247,949,796 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1247,948,858 - 247,949,796 (+)EnsemblGRCh38hg38GRCh38
GRCh371248,112,160 - 248,113,098 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361246,178,783 - 246,179,721 (+)NCBINCBI36Build 36hg18NCBI36
Build 341244,438,200 - 244,439,139NCBI
Celera1221,397,730 - 221,398,668 (+)NCBICelera
Cytogenetic Map1q44NCBI
HuRef1218,495,850 - 218,496,788 (+)NCBIHuRef
CHM1_11249,384,478 - 249,385,416 (+)NCBICHM1_1
T2T-CHM13v2.01247,374,888 - 247,375,826 (+)NCBIT2T-CHM13v2.0
LOC100521433
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1255,309,592 - 55,310,530 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2255,950,606 - 55,951,544 (-)NCBISscrofa10.2Sscrofa10.2susScr3

Variants

.
Variants in OR2L17
8 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

reproductive system
High
Medium
Low
Below cutoff 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000001847   ⟹   ENSCAFP00000001702
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl141,387,375 - 1,388,310 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845014709   ⟹   ENSCAFP00845011398
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl141,108,279 - 1,109,214 (-)Ensembl
RefSeq Acc Id: NM_001388534   ⟹   NP_001375463
RefSeq Status: INFERRED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha141,026,999 - 1,027,934 (-)NCBI
ROS_Cfam_1.0141,108,279 - 1,109,214 (-)NCBI
UMICH_Zoey_3.1141,317,702 - 1,318,637 (-)NCBI
UNSW_CanFamBas_1.0141,079,472 - 1,080,407 (-)NCBI
UU_Cfam_GSD_1.0141,067,717 - 1,068,652 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001375463 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAD24201 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000001702.2
  ENSCAFP00040007621.1
  ENSCAFP00845011398
  ENSCAFP00845011398.1
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000001702   ⟸   ENSCAFT00000001847
RefSeq Acc Id: NP_001375463   ⟸   NM_001388534
- UniProtKB: A0A8C0JVR8 (UniProtKB/TrEMBL),   A0A8I3MZ37 (UniProtKB/TrEMBL),   A0A8P0N4A8 (UniProtKB/TrEMBL),   A0A8C0Q998 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845011398   ⟸   ENSCAFT00845014709
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000001195 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00040004652 UniProtKB/TrEMBL
  ENSCAFG00845008368 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000001847.3 UniProtKB/TrEMBL
  ENSCAFT00040008773.1 UniProtKB/TrEMBL
  ENSCAFT00845014709 ENTREZGENE
  ENSCAFT00845014709.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
NCBI Gene cOR2L17 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8C0JVR8 ENTREZGENE
  A0A8C0Q998 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MZ37 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0N4A8 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:84656 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-01-14 OR2L17  olfactory receptor family 2 subfamily L member 17  cOR2L17  cOR2L17 olfactory receptor family 2 subfamily L-like  Symbol and/or name change 5135510 APPROVED