GLT8D1 (glycosyltransferase 8 domain containing 1) - Rat Genome Database

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Gene: GLT8D1 (glycosyltransferase 8 domain containing 1) Canis lupus familiaris
Analyze
Symbol: GLT8D1
Name: glycosyltransferase 8 domain containing 1
RGD ID: 12331955
Description: ENCODES a protein that exhibits glycosyltransferase activity (inferred); UDP-glycosyltransferase activity (inferred); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); congenital disorder of glycosylation In (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN Golgi apparatus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: glycosyltransferase 8 domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12037,093,826 - 37,103,213 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2037,093,653 - 37,103,211 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2037,075,552 - 37,085,237 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02037,444,317 - 37,454,006 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2037,447,602 - 37,454,004 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12036,807,880 - 36,817,553 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02037,216,508 - 37,226,173 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02037,493,970 - 37,503,657 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
GLT8D1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12037,093,826 - 37,103,213 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2037,093,653 - 37,103,211 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2037,075,552 - 37,085,237 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02037,444,317 - 37,454,006 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2037,447,602 - 37,454,004 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12036,807,880 - 36,817,553 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02037,216,508 - 37,226,173 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02037,493,970 - 37,503,657 (+)NCBIUU_Cfam_GSD_1.0
GLT8D1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38352,694,486 - 52,705,791 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl352,694,486 - 52,706,032 (-)EnsemblGRCh38hg38GRCh38
GRCh37352,728,502 - 52,739,807 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36352,703,544 - 52,715,088 (-)NCBINCBI36Build 36hg18NCBI36
Build 34352,703,544 - 52,712,662NCBI
Celera352,707,215 - 52,718,759 (-)NCBICelera
Cytogenetic Map3p21.1NCBI
HuRef352,790,354 - 52,801,626 (-)NCBIHuRef
CHM1_1352,680,576 - 52,692,270 (-)NCBICHM1_1
T2T-CHM13v2.0352,727,397 - 52,738,983 (-)NCBIT2T-CHM13v2.0
Glt8d1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391430,723,137 - 30,733,948 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1430,723,357 - 30,733,948 (+)EnsemblGRCm39 Ensembl
GRCm381431,001,197 - 31,012,441 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1431,001,400 - 31,011,991 (+)EnsemblGRCm38mm10GRCm38
MGSCv371431,814,579 - 31,825,627 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361429,830,713 - 29,840,994 (+)NCBIMGSCv36mm8
Celera1427,259,208 - 27,270,258 (+)NCBICelera
Cytogenetic Map14BNCBI
cM Map1419.09NCBI
Glt8d1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8166,198,152 - 6,213,671 (+)NCBIGRCr8
mRatBN7.2166,192,269 - 6,207,227 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl166,192,300 - 6,207,229 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx166,204,136 - 6,219,074 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0167,349,598 - 7,364,538 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0166,211,305 - 6,226,236 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0167,082,450 - 7,097,405 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl167,082,450 - 7,097,401 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0167,011,033 - 7,025,989 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4166,429,357 - 6,444,262 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1166,429,354 - 6,444,259 (+)NCBI
Celera168,982,084 - 8,997,063 (-)NCBICelera
Cytogenetic Map16p16NCBI
Glt8d1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554302,678,166 - 2,690,555 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554302,678,166 - 2,690,555 (-)NCBIChiLan1.0ChiLan1.0
GLT8D1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2252,688,109 - 52,699,781 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1352,692,875 - 52,704,528 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0352,634,996 - 52,646,702 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1353,862,812 - 53,873,900 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl353,862,812 - 53,873,900 (-)Ensemblpanpan1.1panPan2
Glt8d1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118170,345,374 - 170,357,203 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364733,483,948 - 3,495,773 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364733,483,948 - 3,495,611 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GLT8D1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1334,828,604 - 34,839,794 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11334,828,601 - 34,839,854 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21338,028,635 - 38,039,461 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GLT8D1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12214,068,377 - 14,078,064 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2214,068,718 - 14,077,775 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041152,822,225 - 152,831,715 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Glt8d1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248224,506,395 - 4,521,704 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248224,506,275 - 4,520,151 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GLT8D1
123 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 18 2 4 2 6 1 10 8 10 6
Low 5 4 4 2 4 5 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000014246   ⟹   ENSCAFP00000013173
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2037,093,653 - 37,103,211 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845052895   ⟹   ENSCAFP00845041532
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2037,447,602 - 37,454,004 (+)Ensembl
RefSeq Acc Id: XM_005632438   ⟹   XP_005632495
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12037,093,826 - 37,103,213 (+)NCBI
Dog10K_Boxer_Tasha2037,075,832 - 37,085,237 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038427548   ⟹   XP_038283476
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02037,444,317 - 37,454,006 (+)NCBI
RefSeq Acc Id: XM_038427549   ⟹   XP_038283477
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02037,444,595 - 37,454,006 (+)NCBI
RefSeq Acc Id: XM_038455207   ⟹   XP_038311135
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2037,075,552 - 37,085,237 (+)NCBI
RefSeq Acc Id: XM_038503251   ⟹   XP_038359179
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12036,807,880 - 36,817,553 (+)NCBI
RefSeq Acc Id: XM_038503252   ⟹   XP_038359180
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12036,808,159 - 36,817,553 (+)NCBI
RefSeq Acc Id: XM_038566227   ⟹   XP_038422155
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02037,493,970 - 37,503,657 (+)NCBI
RefSeq Acc Id: XM_038566228   ⟹   XP_038422156
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02037,494,241 - 37,503,657 (+)NCBI
RefSeq Acc Id: XM_038630391   ⟹   XP_038486319
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02037,216,508 - 37,226,173 (+)NCBI
RefSeq Acc Id: XM_038630392   ⟹   XP_038486320
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02037,216,788 - 37,226,173 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_005632495   ⟸   XM_005632438
- UniProtKB: A0A8C0MDC8 (UniProtKB/TrEMBL),   A0A8C0JQS1 (UniProtKB/TrEMBL),   A0A8I3Q272 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000013173   ⟸   ENSCAFT00000014246
RefSeq Acc Id: XP_038359179   ⟸   XM_038503251
RefSeq Acc Id: XP_038359180   ⟸   XM_038503252
RefSeq Acc Id: XP_038486319   ⟸   XM_038630391
RefSeq Acc Id: XP_038486320   ⟸   XM_038630392
RefSeq Acc Id: XP_038283476   ⟸   XM_038427548
- UniProtKB: A0A8C0MDC8 (UniProtKB/TrEMBL),   A0A8C0JQS1 (UniProtKB/TrEMBL),   A0A8I3Q272 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038283477   ⟸   XM_038427549
- UniProtKB: A0A8C0MDC8 (UniProtKB/TrEMBL),   A0A8C0JQS1 (UniProtKB/TrEMBL),   A0A8I3Q272 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038311135   ⟸   XM_038455207
- UniProtKB: A0A8C0MDC8 (UniProtKB/TrEMBL),   A0A8C0JQS1 (UniProtKB/TrEMBL),   A0A8I3Q272 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038422155   ⟸   XM_038566227
- UniProtKB: A0A8C0JQS1 (UniProtKB/TrEMBL),   A0A8C0MDC8 (UniProtKB/TrEMBL),   A0A8I3Q272 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038422156   ⟸   XM_038566228
- UniProtKB: A0A8C0JQS1 (UniProtKB/TrEMBL),   A0A8C0MDC8 (UniProtKB/TrEMBL),   A0A8I3Q272 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845041532   ⟸   ENSCAFT00845052895

Promoters
RGD ID:13686845
Promoter ID:EPDNEW_C4911
Type:single initiation site
Name:GLT8D1_1
Description:glycosyltransferase 8 domain containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12037,096,796 - 37,096,856EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000008946 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030005299 UniProtKB/TrEMBL
  ENSCAFG00040019744 UniProtKB/TrEMBL
  ENSCAFG00845029866 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000014246.5 UniProtKB/TrEMBL
  ENSCAFT00030009689.1 UniProtKB/TrEMBL
  ENSCAFT00030009730.1 UniProtKB/TrEMBL
  ENSCAFT00040036542.1 UniProtKB/TrEMBL
  ENSCAFT00845052895 ENTREZGENE
  ENSCAFT00845052895.1 UniProtKB/TrEMBL
InterPro Glyco_trans_8 UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
KEGG Report cfa:484731 UniProtKB/TrEMBL
NCBI Gene GLT8D1 ENTREZGENE
PANTHER GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam Glyco_transf_8 UniProtKB/TrEMBL
Superfamily-SCOP SSF53448 UniProtKB/TrEMBL
UniProt A0A8C0JQS1 ENTREZGENE
  A0A8C0M9X0_CANLF UniProtKB/TrEMBL
  A0A8C0MDC8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3Q272 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:41280 ENTREZGENE