YIPF2 (Yip1 domain family member 2) - Rat Genome Database

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Gene: YIPF2 (Yip1 domain family member 2) Canis lupus familiaris
Analyze
Symbol: YIPF2
Name: Yip1 domain family member 2
RGD ID: 12331349
Description: ENCODES a protein that exhibits small GTPase binding (inferred); INVOLVED IN vesicle-mediated transport (inferred); ASSOCIATED WITH familial hypercholesterolemia (ortholog); FOUND IN Golgi medial cisterna (ortholog); Golgi trans cisterna (ortholog); trans-Golgi network (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein YIPF2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12050,326,437 - 50,331,038 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2050,325,271 - 50,331,031 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2050,199,791 - 50,204,961 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02050,848,514 - 50,853,681 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2050,847,352 - 50,853,676 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12050,057,866 - 50,063,037 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02050,485,152 - 50,490,324 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02050,726,756 - 50,731,927 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
YIPF2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12050,326,437 - 50,331,038 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2050,325,271 - 50,331,031 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2050,199,791 - 50,204,961 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02050,848,514 - 50,853,681 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2050,847,352 - 50,853,676 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12050,057,866 - 50,063,037 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02050,485,152 - 50,490,324 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02050,726,756 - 50,731,927 (+)NCBIUU_Cfam_GSD_1.0
YIPF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381910,922,193 - 10,928,639 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1910,922,185 - 10,928,681 (-)EnsemblGRCh38hg38GRCh38
GRCh371911,032,869 - 11,039,315 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361910,894,444 - 10,900,357 (-)NCBINCBI36Build 36hg18NCBI36
Celera1910,928,285 - 10,934,198 (-)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef1910,611,338 - 10,617,251 (-)NCBIHuRef
CHM1_11911,034,607 - 11,040,520 (-)NCBICHM1_1
T2T-CHM13v2.01911,049,204 - 11,055,650 (-)NCBIT2T-CHM13v2.0
Yipf2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39921,499,978 - 21,504,131 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl921,499,978 - 21,504,124 (-)EnsemblGRCm39 Ensembl
GRCm38921,588,682 - 21,592,831 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl921,588,682 - 21,592,828 (-)EnsemblGRCm38mm10GRCm38
MGSCv37921,393,126 - 21,397,190 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36921,339,084 - 21,343,148 (-)NCBIMGSCv36mm8
Celera918,858,302 - 18,862,366 (-)NCBICelera
Cytogenetic Map9A3NCBI
Yipf2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2820,141,148 - 20,145,349 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl820,141,155 - 20,145,339 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx824,173,258 - 24,177,468 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0822,468,810 - 22,473,020 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0820,370,780 - 20,374,981 (-)NCBIRnor_WKY
Rnor_6.0822,621,758 - 22,625,959 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl822,621,782 - 22,625,959 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0822,675,712 - 22,679,913 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4820,694,350 - 20,698,551 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1820,694,359 - 20,698,551 (-)NCBI
Celera821,532,460 - 21,536,661 (-)NCBICelera
Cytogenetic Map8q13NCBI
Yipf2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554951,997,720 - 2,006,264 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554952,001,458 - 2,005,880 (-)NCBIChiLan1.0ChiLan1.0
YIPF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11911,195,553 - 11,201,409 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1911,195,562 - 11,203,248 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01910,475,806 - 10,482,352 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
Yipf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118209,228,218 - 209,234,338 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366591,120,483 - 1,126,403 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049366591,120,365 - 1,126,418 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
YIPF2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl269,641,052 - 69,649,824 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1269,644,000 - 69,649,691 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2270,079,512 - 70,084,534 (-)NCBISscrofa10.2Sscrofa10.2susScr3
YIPF2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.169,915,133 - 9,927,917 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl69,916,223 - 9,927,902 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607410,023,539 - 10,029,364 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Yipf2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248282,871,556 - 2,875,503 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248282,871,547 - 2,875,589 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in YIPF2
52 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 22 6 6 6 6 12 8 10 6
Low 5 6
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005632881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022407048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038428605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038428606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038504244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038504245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038567271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038567272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038631422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038631423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_542062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000027930   ⟹   ENSCAFP00000025973
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2050,326,487 - 50,331,031 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000087091   ⟹   ENSCAFP00000052559
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2050,325,271 - 50,331,031 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845039682   ⟹   ENSCAFP00845031086
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2050,847,352 - 50,853,676 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845039783   ⟹   ENSCAFP00845031159
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2050,847,352 - 50,853,676 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845039891   ⟹   ENSCAFP00845031240
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2050,848,573 - 50,853,676 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845039995   ⟹   ENSCAFP00845031320
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2050,848,573 - 50,853,676 (+)Ensembl
RefSeq Acc Id: XM_005632881   ⟹   XP_005632938
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12050,326,437 - 50,331,038 (+)NCBI
Dog10K_Boxer_Tasha2050,199,791 - 50,204,961 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038428605   ⟹   XP_038284533
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02050,848,514 - 50,853,681 (+)NCBI
RefSeq Acc Id: XM_038428606   ⟹   XP_038284534
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02050,848,514 - 50,853,681 (+)NCBI
RefSeq Acc Id: XM_038504244   ⟹   XP_038360172
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12050,057,866 - 50,063,037 (+)NCBI
RefSeq Acc Id: XM_038504245   ⟹   XP_038360173
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12050,057,866 - 50,063,037 (+)NCBI
RefSeq Acc Id: XM_038567271   ⟹   XP_038423199
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02050,726,756 - 50,731,927 (+)NCBI
RefSeq Acc Id: XM_038567272   ⟹   XP_038423200
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02050,726,756 - 50,731,927 (+)NCBI
RefSeq Acc Id: XM_038631422   ⟹   XP_038487350
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02050,485,152 - 50,490,324 (+)NCBI
RefSeq Acc Id: XM_038631423   ⟹   XP_038487351
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02050,485,152 - 50,490,324 (+)NCBI
RefSeq Acc Id: XM_542062   ⟹   XP_542062
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12050,326,437 - 50,331,038 (+)NCBI
Dog10K_Boxer_Tasha2050,199,791 - 50,204,961 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005632938   ⟸   XM_005632881
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_542062   ⟸   XM_542062
- Peptide Label: isoform X2
- UniProtKB: A0A8C0SYY6 (UniProtKB/TrEMBL),   A0A8I3PFZ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000052559   ⟸   ENSCAFT00000087091
RefSeq Acc Id: ENSCAFP00000025973   ⟸   ENSCAFT00000027930
RefSeq Acc Id: XP_038360172   ⟸   XM_038504244
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038360173   ⟸   XM_038504245
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038487350   ⟸   XM_038631422
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038487351   ⟸   XM_038631423
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038284533   ⟸   XM_038428605
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038284534   ⟸   XM_038428606
- Peptide Label: isoform X2
- UniProtKB: A0A8C0SYY6 (UniProtKB/TrEMBL),   A0A8I3PFZ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038423199   ⟸   XM_038567271
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038423200   ⟸   XM_038567272
- Peptide Label: isoform X2
RefSeq Acc Id: ENSCAFP00845031159   ⟸   ENSCAFT00845039783
RefSeq Acc Id: ENSCAFP00845031320   ⟸   ENSCAFT00845039995
RefSeq Acc Id: ENSCAFP00845031086   ⟸   ENSCAFT00845039682
RefSeq Acc Id: ENSCAFP00845031240   ⟸   ENSCAFT00845039891
Protein Domains
Yip1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000017613 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030017088 UniProtKB/TrEMBL
  ENSCAFG00040017545 UniProtKB/TrEMBL
  ENSCAFG00845022472 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000025973.4 UniProtKB/TrEMBL
  ENSCAFP00000052559.2 UniProtKB/TrEMBL
  ENSCAFP00000073686.1 UniProtKB/TrEMBL
  ENSCAFP00000073878.1 UniProtKB/TrEMBL
  ENSCAFP00030027506.1 UniProtKB/TrEMBL
  ENSCAFP00030027560.1 UniProtKB/TrEMBL
  ENSCAFP00040028210 UniProtKB/TrEMBL
  ENSCAFP00040028229 UniProtKB/TrEMBL
  ENSCAFP00845031086.1 UniProtKB/TrEMBL
  ENSCAFP00845031159.1 UniProtKB/TrEMBL
  ENSCAFP00845031240 ENTREZGENE
  ENSCAFP00845031240.1 UniProtKB/TrEMBL
  ENSCAFP00845031320.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000027930.5 UniProtKB/TrEMBL
  ENSCAFT00000087091.2 UniProtKB/TrEMBL
  ENSCAFT00000101057.1 UniProtKB/TrEMBL
  ENSCAFT00000102124.1 UniProtKB/TrEMBL
  ENSCAFT00030031538.1 UniProtKB/TrEMBL
  ENSCAFT00030031604.1 UniProtKB/TrEMBL
  ENSCAFT00040032427 UniProtKB/TrEMBL
  ENSCAFT00040032447 UniProtKB/TrEMBL
  ENSCAFT00845039682.1 UniProtKB/TrEMBL
  ENSCAFT00845039783.1 UniProtKB/TrEMBL
  ENSCAFT00845039891 ENTREZGENE
  ENSCAFT00845039891.1 UniProtKB/TrEMBL
  ENSCAFT00845039995.1 UniProtKB/TrEMBL
InterPro Yip1 UniProtKB/TrEMBL
  Yip5/YIPF1/YIPF2 UniProtKB/TrEMBL
NCBI Gene YIPF2 ENTREZGENE
PANTHER PTHR12822 UniProtKB/TrEMBL
Pfam Yip1 UniProtKB/TrEMBL
UniProt A0A8C0NP08_CANLF UniProtKB/TrEMBL
  A0A8C0NUS4_CANLF UniProtKB/TrEMBL
  A0A8C0SYY6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0Z0T6_CANLF UniProtKB/TrEMBL
  A0A8I3PBA9_CANLF UniProtKB/TrEMBL
  A0A8I3PFZ7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PJ04_CANLF UniProtKB/TrEMBL
  A0A8I3S5U0_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:48488 ENTREZGENE