REP15 (RAB15 effector protein) - Rat Genome Database

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Gene: REP15 (RAB15 effector protein) Canis lupus familiaris
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Symbol: REP15
Name: RAB15 effector protein
RGD ID: 12330900
Description: INVOLVED IN receptor recycling (inferred); transferrin transport (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN endosome membrane (inferred); perinuclear region of cytoplasm (inferred); recycling endosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12720,029,521 - 20,030,255 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2720,029,545 - 20,030,255 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2726,369,906 - 26,371,188 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02720,222,986 - 20,224,268 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2720,223,415 - 20,224,125 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12720,029,609 - 20,030,890 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02720,056,295 - 20,057,577 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02726,526,872 - 26,528,154 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
REP15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12720,029,521 - 20,030,255 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2720,029,545 - 20,030,255 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2726,369,906 - 26,371,188 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02720,222,986 - 20,224,268 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2720,223,415 - 20,224,125 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12720,029,609 - 20,030,890 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02720,056,295 - 20,057,577 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02726,526,872 - 26,528,154 (+)NCBIUU_Cfam_GSD_1.0
REP15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381227,696,447 - 27,697,596 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1227,696,447 - 27,697,596 (+)EnsemblGRCh38hg38GRCh38
GRCh371227,849,380 - 27,850,529 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361227,740,695 - 27,741,833 (+)NCBINCBI36Build 36hg18NCBI36
Celera1232,995,018 - 32,996,156 (+)NCBICelera
Cytogenetic Map12p11.22NCBI
HuRef1227,618,281 - 27,619,419 (+)NCBIHuRef
CHM1_11227,814,413 - 27,815,551 (+)NCBICHM1_1
T2T-CHM13v2.01227,568,182 - 27,569,331 (+)NCBIT2T-CHM13v2.0
Rep15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396146,934,035 - 146,935,016 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6146,934,082 - 146,935,743 (+)EnsemblGRCm39 Ensembl
GRCm386147,032,537 - 147,033,518 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6147,032,584 - 147,034,245 (+)EnsemblGRCm38mm10GRCm38
MGSCv376146,981,059 - 146,982,040 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366146,989,707 - 146,990,688 (+)NCBIMGSCv36mm8
Celera6150,068,211 - 150,069,190 (+)NCBICelera
Cytogenetic Map6G3NCBI
cM Map677.7NCBI
Rep15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84181,682,588 - 181,683,661 (+)NCBIGRCr8
mRatBN7.24179,951,935 - 179,953,008 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4179,951,935 - 179,953,008 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4186,236,339 - 186,237,412 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04182,020,846 - 182,021,919 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04180,641,291 - 180,642,364 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04181,428,664 - 181,429,737 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4181,428,664 - 181,429,737 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04245,578,542 - 245,579,615 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44184,636,280 - 184,637,353 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4168,445,446 - 168,446,519 (+)NCBICelera
Cytogenetic Map4q44NCBI
Rep15
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555057,189,217 - 7,326,178 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555057,189,592 - 7,190,928 (-)NCBIChiLan1.0ChiLan1.0
REP15
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21069,113,465 - 69,118,257 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11269,109,862 - 69,114,724 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01258,613,614 - 58,615,471 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11261,232,853 - 61,234,270 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1261,233,163 - 61,233,873 (-)Ensemblpanpan1.1panPan2
Rep15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494581,979,143 - 81,982,867 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004941999170 - 3,851 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
REP15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1546,029,302 - 46,031,563 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2549,597,383 - 49,600,776 (-)NCBISscrofa10.2Sscrofa10.2susScr3
REP15
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11127,417,973 - 27,419,427 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1127,418,405 - 27,419,115 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660697,632,245 - 7,633,687 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rep15
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624935390,571 - 391,272 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624935389,807 - 391,802 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in REP15
6 total Variants

Expression


Sequence


RefSeq Acc Id: ENSCAFT00000091031   ⟹   ENSCAFP00000050348
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2720,029,545 - 20,030,255 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845041183   ⟹   ENSCAFP00845032277
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2720,223,415 - 20,224,125 (-)Ensembl
RefSeq Acc Id: XM_003433559   ⟹   XP_003433607
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12720,029,521 - 20,030,255 (-)NCBI
Dog10K_Boxer_Tasha2726,369,906 - 26,371,188 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038438673   ⟹   XP_038294601
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02720,222,986 - 20,224,268 (-)NCBI
RefSeq Acc Id: XM_038513340   ⟹   XP_038369268
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12720,029,609 - 20,030,890 (-)NCBI
RefSeq Acc Id: XM_038577140   ⟹   XP_038433068
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02726,526,872 - 26,528,154 (+)NCBI
RefSeq Acc Id: XM_038641142   ⟹   XP_038497070
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02720,056,295 - 20,057,577 (-)NCBI
RefSeq Acc Id: XP_003433607   ⟸   XM_003433559
- UniProtKB: A0A8C0KL06 (UniProtKB/TrEMBL),   A0A8C0T2R0 (UniProtKB/TrEMBL),   A0A8I3PS80 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000050348   ⟸   ENSCAFT00000091031
RefSeq Acc Id: XP_038369268   ⟸   XM_038513340
RefSeq Acc Id: XP_038497070   ⟸   XM_038641142
RefSeq Acc Id: XP_038294601   ⟸   XM_038438673
- UniProtKB: A0A8C0KL06 (UniProtKB/TrEMBL),   A0A8C0T2R0 (UniProtKB/TrEMBL),   A0A8I3PS80 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038433068   ⟸   XM_038577140
- UniProtKB: A0A8C0KL06 (UniProtKB/TrEMBL),   A0A8C0T2R0 (UniProtKB/TrEMBL),   A0A8I3PS80 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845032277   ⟸   ENSCAFT00845041183


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000048521 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00040018559 UniProtKB/TrEMBL
  ENSCAFG00845023340 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000091031.2 UniProtKB/TrEMBL
  ENSCAFT00040034278.1 UniProtKB/TrEMBL
  ENSCAFT00845041183 ENTREZGENE
  ENSCAFT00845041183.1 UniProtKB/TrEMBL
InterPro Rab15_effector UniProtKB/TrEMBL
KEGG Report cfa:100686017 UniProtKB/TrEMBL
NCBI Gene REP15 ENTREZGENE
PANTHER PTHR36682 UniProtKB/TrEMBL
  RAB15 EFFECTOR PROTEIN UniProtKB/TrEMBL
Pfam Rab15_effector UniProtKB/TrEMBL
UniProt A0A8C0KL06 ENTREZGENE
  A0A8C0T2R0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PS80 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:111699 ENTREZGENE