CPB1 (carboxypeptidase B1) - Rat Genome Database

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Gene: CPB1 (carboxypeptidase B1) Canis lupus familiaris
Analyze
Symbol: CPB1
Name: carboxypeptidase B1
RGD ID: 12329824
Description: ENCODES a protein that exhibits carboxypeptidase activity (ortholog); INVOLVED IN proteolysis (ortholog); ASSOCIATED WITH genetic disease (ortholog); glycogen storage disease XV (ortholog); FOUND IN cytoplasmic vesicle (inferred); extracellular region (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 47 kDa zymogen granule membrane-associated protein; carboxypeptidase B; ZAP47
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12343,679,901 - 43,714,042 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2343,679,361 - 43,748,213 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2343,544,341 - 43,578,459 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02344,307,489 - 44,341,627 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2344,276,898 - 44,375,642 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12343,889,898 - 43,924,027 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02343,943,078 - 43,978,590 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02344,198,385 - 44,232,509 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
proteolysis  (IBA,IEA,ISO)

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CPB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12343,679,901 - 43,714,042 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2343,679,361 - 43,748,213 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2343,544,341 - 43,578,459 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02344,307,489 - 44,341,627 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2344,276,898 - 44,375,642 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12343,889,898 - 43,924,027 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02343,943,078 - 43,978,590 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02344,198,385 - 44,232,509 (+)NCBIUU_Cfam_GSD_1.0
CPB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383148,827,811 - 148,860,187 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3148,791,102 - 148,860,187 (+)EnsemblGRCh38hg38GRCh38
GRCh373148,545,598 - 148,577,974 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363150,028,278 - 150,060,664 (+)NCBINCBI36Build 36hg18NCBI36
Build 343150,028,285 - 150,060,668NCBI
Celera3146,955,960 - 146,988,049 (+)NCBICelera
Cytogenetic Map3q24NCBI
HuRef3145,918,017 - 145,950,076 (+)NCBIHuRef
CHM1_13148,508,723 - 148,540,807 (+)NCBICHM1_1
T2T-CHM13v2.03151,578,867 - 151,610,937 (+)NCBIT2T-CHM13v2.0
Cpb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39320,303,643 - 20,339,681 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl320,302,428 - 20,329,897 (-)EnsemblGRCm39 Ensembl
GRCm38320,249,479 - 20,275,733 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl320,248,264 - 20,275,733 (-)EnsemblGRCm38mm10GRCm38
MGSCv37320,149,383 - 20,174,651 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36320,441,534 - 20,466,802 (-)NCBIMGSCv36mm8
Celera320,238,683 - 20,264,826 (-)NCBICelera
Cytogenetic Map3A2NCBI
cM Map36.29NCBI
Cpb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82104,684,275 - 104,744,824 (-)NCBIGRCr8
mRatBN7.22102,755,241 - 102,785,628 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2102,755,241 - 102,785,628 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2109,302,257 - 109,332,662 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02107,423,440 - 107,453,849 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02102,350,160 - 102,384,224 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02105,059,293 - 105,089,682 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2105,059,426 - 105,089,659 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02124,787,804 - 124,850,792 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42105,413,336 - 105,443,909 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12105,358,297 - 105,388,871 (-)NCBI
Celera298,123,613 - 98,155,223 (-)NCBICelera
Cytogenetic Map2q24NCBI
Cpb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554748,632,228 - 8,697,245 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554748,632,733 - 8,697,197 (-)NCBIChiLan1.0ChiLan1.0
CPB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22146,687,228 - 146,756,143 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13146,691,965 - 146,760,873 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03145,815,651 - 145,884,498 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13153,431,094 - 153,463,177 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3153,394,339 - 153,463,366 (+)Ensemblpanpan1.1panPan2
Cpb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560282,972,757 - 83,009,199 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365196,724,836 - 6,755,610 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365196,724,836 - 6,755,610 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CPB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1389,044,310 - 89,088,392 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11389,043,822 - 89,088,387 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21397,005,130 - 97,030,476 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CPB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11541,845,115 - 41,877,173 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1541,845,115 - 41,877,377 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604114,687,765 - 14,719,995 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cpb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473026,059,150 - 26,092,486 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473026,059,326 - 26,092,556 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CPB1
426 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 1 5 5 1 5 6 4 5
Low 4 2 15 1 4 1 1 6 6 1
Below cutoff 3 2 1 5 1 7

Sequence


RefSeq Acc Id: ENSCAFT00000013066   ⟹   ENSCAFP00000012089
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2343,679,901 - 43,714,042 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000013074   ⟹   ENSCAFP00000012097
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2343,719,030 - 43,748,213 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000065752   ⟹   ENSCAFP00000043552
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2343,679,890 - 43,748,213 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000071516   ⟹   ENSCAFP00000056111
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2343,679,890 - 43,748,213 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000082050   ⟹   ENSCAFP00000058575
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2343,679,361 - 43,748,213 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000087051   ⟹   ENSCAFP00000046739
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2343,679,890 - 43,748,213 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845039387   ⟹   ENSCAFP00845030863
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2344,276,898 - 44,375,642 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845039526   ⟹   ENSCAFP00845030977
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2344,307,478 - 44,375,642 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845039677   ⟹   ENSCAFP00845031082
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2344,307,489 - 44,341,627 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845039809   ⟹   ENSCAFP00845031177
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2344,346,575 - 44,375,642 (+)Ensembl
RefSeq Acc Id: NM_001003005   ⟹   NP_001003005
RefSeq Status: VALIDATED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12343,679,901 - 43,714,042 (+)NCBI
Dog10K_Boxer_Tasha2343,544,341 - 43,578,459 (+)NCBI
ROS_Cfam_1.02344,307,489 - 44,341,627 (+)NCBI
UMICH_Zoey_3.12343,889,898 - 43,924,027 (+)NCBI
UNSW_CanFamBas_1.02343,943,078 - 43,978,590 (+)NCBI
UU_Cfam_GSD_1.02344,198,385 - 44,232,509 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001003005   ⟸   NM_001003005
- Peptide Label: preproprotein
- UniProtKB: P55261 (UniProtKB/Swiss-Prot),   A0A8C0KY29 (UniProtKB/TrEMBL),   A0A8C0QIC0 (UniProtKB/TrEMBL),   A0A8I3PKA8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000046739   ⟸   ENSCAFT00000087051
RefSeq Acc Id: ENSCAFP00000012089   ⟸   ENSCAFT00000013066
RefSeq Acc Id: ENSCAFP00000012097   ⟸   ENSCAFT00000013074
RefSeq Acc Id: ENSCAFP00000058575   ⟸   ENSCAFT00000082050
RefSeq Acc Id: ENSCAFP00000043552   ⟸   ENSCAFT00000065752
RefSeq Acc Id: ENSCAFP00000056111   ⟸   ENSCAFT00000071516
RefSeq Acc Id: ENSCAFP00845030863   ⟸   ENSCAFT00845039387
RefSeq Acc Id: ENSCAFP00845030977   ⟸   ENSCAFT00845039526
RefSeq Acc Id: ENSCAFP00845031177   ⟸   ENSCAFT00845039809
RefSeq Acc Id: ENSCAFP00845031082   ⟸   ENSCAFT00845039677

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000008235 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030007747 UniProtKB/TrEMBL
  ENSCAFG00040008731 UniProtKB/TrEMBL
  ENSCAFG00845022322 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000013066.5 UniProtKB/TrEMBL
  ENSCAFT00000087051.2 UniProtKB/TrEMBL
  ENSCAFT00030014219.1 UniProtKB/TrEMBL
  ENSCAFT00040016269.1 UniProtKB/TrEMBL
  ENSCAFT00040016343.1 UniProtKB/TrEMBL
  ENSCAFT00040016393.1 UniProtKB/TrEMBL
  ENSCAFT00040016474.1 UniProtKB/TrEMBL
  ENSCAFT00845039526.1 UniProtKB/TrEMBL
  ENSCAFT00845039677 ENTREZGENE
  ENSCAFT00845039677.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.340 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Zn peptidases UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CPB_M14_CPD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  M14A-like_propep UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  M14A_act_pep UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peptidase_M14 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report cfa:403512 UniProtKB/TrEMBL
NCBI Gene CPB1 ENTREZGENE
PANTHER CARBOXYPEPTIDASE B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MAST CELL CARBOXYPEPTIDASE A UniProtKB/TrEMBL
  PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Peptidase_M14 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Propep_M14 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS CRBOXYPTASEA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CARBOXYPEPT_ZN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CARBOXYPEPT_ZN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PEPTIDASE_M14 UniProtKB/Swiss-Prot
SMART Zn_pept UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Protease propeptides/inhibitors UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Zn-dependent exopeptidases UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8C0KY29 ENTREZGENE
  A0A8C0QIC0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0QLQ9_CANLF UniProtKB/TrEMBL
  A0A8C0QNK6_CANLF UniProtKB/TrEMBL
  A0A8C0S0V0_CANLF UniProtKB/TrEMBL
  A0A8I3PIL0_CANLF UniProtKB/TrEMBL
  A0A8I3PKA8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NWW9_CANLF UniProtKB/TrEMBL
  CBPB1_CANLF UniProtKB/Swiss-Prot, ENTREZGENE
VGNC ID VGNC:39549 ENTREZGENE