GTF2H1 (general transcription factor IIH subunit 1)

Gene: GTF2H1 (general transcription factor IIH subunit 1) Canis lupus familiaris

Analyze

Symbol:

GTF2H1

Name:

general transcription factor IIH subunit 1

RGD ID:

12328257

Description:

ENCODES a protein that exhibits chromatin binding (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); transcription by RNA polymerase II (ortholog); PARTICIPATES IN nucleotide excision repair pathway; RNA polymerase II transcription initiation pathway; ASSOCIATED WITH Fanconi syndrome (ortholog); genetic disease (ortholog); Glycogen Storage Disease XI (ortholog); FOUND IN transcription factor TFIIH holo complex (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	21	40,770,661 - 40,807,329 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	21	40,770,983 - 40,806,556 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	21	40,250,242 - 40,286,596 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	21	41,894,288 - 41,930,625 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	21	41,894,288 - 41,930,623 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	21	40,886,602 - 40,922,934 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	21	41,075,253 - 41,111,663 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	21	41,452,829 - 41,489,189 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Fanconi syndrome (ISO)

genetic disease (ISO)

Glycogen Storage Disease XI (ISO)

intellectual disability (ISO)

progressive myoclonus epilepsy 7 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to leukemia inhibitory factor (ISO)

DNA repair (IEA)

DNA-templated transcription (IEA)

nucleotide-excision repair (IEA)

positive regulation of DNA-templated transcription (IEA)

transcription by RNA polymerase I (IEA)

transcription by RNA polymerase II (IEA,ISO)

transcription initiation at RNA polymerase II promoter (IEA)

Cellular Component

nucleoplasm (IEA)

nucleus (IEA)

transcription factor TFIIH core complex (IEA)

transcription factor TFIIH holo complex (IEA,ISO)

Molecular Function

chromatin binding (ISO)

nuclear thyroid hormone receptor binding (IEA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

nucleotide excision repair pathway (ISO)

RNA polymerase II transcription initiation pathway (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

GTF2H1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	21	40,770,661 - 40,807,329 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	21	40,770,983 - 40,806,556 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	21	40,250,242 - 40,286,596 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	21	41,894,288 - 41,930,625 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	21	41,894,288 - 41,930,623 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	21	40,886,602 - 40,922,934 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	21	41,075,253 - 41,111,663 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	21	41,452,829 - 41,489,189 (+)	NCBI		UU_Cfam_GSD_1.0

GTF2H1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	18,322,567 - 18,367,045 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	18,322,295 - 18,367,045 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	18,344,114 - 18,388,592 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	18,300,719 - 18,345,153 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	18,300,718 - 18,345,152	NCBI
Celera	11	18,476,032 - 18,520,801 (+)	NCBI		Celera
Cytogenetic Map	11	p15.1	NCBI
HuRef	11	18,026,329 - 18,071,105 (+)	NCBI		HuRef
CHM1_1	11	18,343,304 - 18,388,093 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	18,418,103 - 18,462,582 (+)	NCBI		T2T-CHM13v2.0

Gtf2h1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	46,445,518 - 46,473,224 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	46,445,527 - 46,473,224 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	46,796,094 - 46,823,800 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	46,796,103 - 46,823,800 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	54,051,464 - 54,079,170 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	46,664,145 - 46,691,839 (+)	NCBI		MGSCv36	mm8
Celera	7	42,274,479 - 42,302,829 (+)	NCBI		Celera
Cytogenetic Map	7	B3	NCBI
cM Map	7	30.58	NCBI

Gtf2h1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	106,457,692 - 106,485,729 (+)	NCBI		GRCr8
mRatBN7.2	1	97,321,417 - 97,349,455 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	97,321,394 - 97,349,455 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	102,713,646 - 102,741,801 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	111,185,630 - 111,213,785 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	104,469,761 - 104,497,796 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	102,849,618 - 102,877,939 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	102,849,889 - 102,877,944 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	103,923,681 - 103,951,995 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	97,352,251 - 97,380,298 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	97,430,363 - 97,458,409 (+)	NCBI
Celera	1	91,568,224 - 91,596,262 (+)	NCBI		Celera
Cytogenetic Map	1	q22	NCBI

Gtf2h1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955414	33,028,701 - 33,063,233 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955414	33,028,701 - 33,063,233 (+)	NCBI	ChiLan1.0	ChiLan1.0

GTF2H1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	20,636,598 - 20,681,276 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	20,596,985 - 20,641,633 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	18,357,594 - 18,402,268 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	18,042,822 - 18,086,898 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	18,042,824 - 18,086,898 (+)	Ensembl	panpan1.1		panPan2

Gtf2h1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	44,869,445 - 44,906,096 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936528	903,322 - 940,313 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936528	903,429 - 940,308 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GTF2H1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	40,857,723 - 40,900,624 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	40,857,720 - 40,900,591 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	43,921,524 - 43,964,052 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GTF2H1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	46,573,907 - 46,620,443 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	46,573,393 - 46,609,261 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	143,946,538 - 143,998,018 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gtf2h1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624766	9,808,170 - 9,848,173 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624766	9,807,973 - 9,848,167 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in GTF2H1
540 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium	4		16		4		6		12	8	10	6
Low	1	5	6	6	2	6		6
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_014122658	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022407914	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038430654	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038505979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038569202	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038633394	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000244	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000059	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000057	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000014599 ⟹ ENSCAFP00000013505

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	21	40,770,983 - 40,806,556 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00000087493 ⟹ ENSCAFP00000062312

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	21	40,770,983 - 40,806,393 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845028576 ⟹ ENSCAFP00845022484

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	21	41,894,288 - 41,930,623 (+)	Ensembl

RefSeq Acc Id:

XM_014122658 ⟹ XP_013978133

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	21	40,770,931 - 40,807,329 (+)	NCBI
Dog10K_Boxer_Tasha	21	40,250,242 - 40,286,596 (+)	NCBI

Sequence:

show sequence

GCCCGCCTCGGCACTTCCGGTCACGTGCCCCTCAGAGTCCTCGCAGCCAGCGATGGAGGCGAGA
CCCCCCAGTAACAGAGGCGGTGGCGACGGCGGCGGCTCCTGGGTTCCAGCGTCTTCCCGGCAGC
GTCTCTAAGAAGCGCGGCGGAACTCGACCCGATCCAGCCCGGTTACTTACTTCCTGCCCGGGGC
CGTAGCTCCCACCTGCACTTCCTAGACATCATGGCAACTTCATCTGAAGAGGTTTTGTTGATTG
TGAAGAAGGTGCGTCAAAAGAAGCAGGATGGAGCTTTATACCTCATGGCAGAAAGAATTGCTTG
GGCACCTGAAGGCAAAGATAGATTTACAATCAGCCATATGTATGCAGATATTAAATGCCAGAAA
ATCAGTCCAGAAGGAAAAGCTAAAATTCAACTTCAGCTGGTGTTGCATGCAGGGGACACAACTA
ACTTCCATTTTTCCAATGAAAGCACAGCTGTGAAAGAGCGAGATGCAGTGAAAGACCTTCTTCA
GCAGCTGCTGCCCAAATTCAAGAGGAAAGCAAATAAAGAGCTGGAAGAGAAAAACAGAATGCTG
CAAGAAGATCCTGTTTTGTTTCAGCTTTATAAAGACCTTGTTGTGAGTCAAGTGATCAGCGCTG
AGGAATTCTGGGCCAATCGTTTAAATGTGAATGCAACAGAGAGTTCTTCTACATCCAATCATAA
GCAGGATGTTGGCATTTCTGCAGCATTTCTGGCTGATGTCCGGCCCCAAACAGATGGATGTAAT
GGTCTGAGGTACAATTTAACCTCTGATATCATTGAGTCCATATTTAGGACCTATCCAGCAGTAA
AAATGAAGTATGCAGAAAATGTTCCTCACAACATGACAGAAAAAGAGTTTTGGACACGTTTCTT
TCAGTCCCATTATTTTCATAGGGACCGCCTGAATACGGGGTCAAAAGACCTCTTTGCAGAATGT
GCCAAAATTGATGAAAAAGGGTTAAAAACAATGGTTTCATTAGGAGTGAAAAACCCACTACTTG
ATTTGACTGCTTTGGAAGATAAATCATTAGATGAGGGCTATGGCATTTCTTCTGTGCCATCTAC
TTCTAATTCTAAATCCATAAAGGAGAATAGTAATGCTGCCATCATCAAGAGGTTTAACCATCAC
AGTGCCATGGTCCTTGCAGCAGGTCTCAGGAAACAAGAAGCACAAAATGAACAAAATGGTGAAC
CCAGCAGCATCGATGGAAATTCTGGAGATGCAGATTGCTTCCAGCCTGCAGTCAAAAGGGCAAA
GTTACAAGAGTCCATTGAATATGAAGACTTGGGAAAAAATAATTCCATAAAAACGATTGCACTA
AACCTCAAGAAGTCAGATAGGTATTATCACGGTCCAACTCCAATCCAGTCACTACAATATGCAA
CAAGTCAGGACATTATTAATTCTTTTCAAAGTATTAGGCAAGAAATGGAAGCTTATACACCCAA
ATTAACTCAGGTTCTCTCAAGTAGTGCTGCCAGTAGTACTATCACAACGCTGTCACCTGGAGGA
GCACTTATGCAGGGAGGGACACAGCAAGCCATAAACCAGATGGTGCCAAATGATATTCAGTCTG
AATTGAAACACCTTTATGTGGCTGTTGGGGAACTTCTACGGCACTTCTGGTCCTGCTTTCCTGT
TAATACACCATTCCTAGAAGAAAAGGTAGTGAAAATGAAAAGTAATTTGGAGCGATTTCAAGTT
ACGAAGCTCTGCCCATTCCAAGAAAAAATTCGGAGACAGTATTTAAGCACAAATTTGGTAAGTC
ACATAGAAGAGATGCTCCAGACAGCCTACAACAAGCTCCACAAGTGGCAGTCACGGCGTCTGAT
GAAGAAAACGTGAAGTATCTGTGGCTCTCGCAGGTTTTGTGAAATTAAGAGAACTGTGACCTGC
AGTGACTCTGGAAACCTGGCTAAGACATGCCGATGATCGCACAGAAGTGACAAACATCTGCACC
ATGCCAACTCTCGGAGCTGATGCTGTTGTTCTTGCACATTGTGAACTGAAAGGAAAGGAACTGT
GACAAAACTCAAAGCTGAGGAGGTAAATTAAGGCAGAACCAAAATGAGCTAAGTTGCAGAGATA
AATATATATATGTATATGTATATATACACATATATATATTTTAAAGAGACACTGTTTACTGCAG
TTACTCAGGAACTGCTTTTGATTCACATTAAGCTGCTTTCAGAAATTAAAAAAAAAAAAAACTT
TTTAAAAGGGTGCATTGATAAAATCTGAGGTTTGTTTTTTTTTCTTTGTAAATTTTTTTCCTAA
GTTTATGGCACAGGGTACACCTTAAGTATTTCTCCTCCATCCTCCCCTTGGATCCTCAAGTTGT
ACTGAATTCTAATTATACCTTACATCAGCAAGTTAAAGAGAGTACTTTAAAGTAAAGCAGAAGG
AGACTGTTGTTCAGCCATCAGGAAACAGTTATAGTCAGAAGACATCATTGGTCCTGTGTTTCCT
ACGGAAATAAGAAACAATAAATGTTGCACTGAATGTTTGTGGTTTGGAGTCCCTAAATAATTAA
GAGGGAACATATTTGCAGAAAGTTGTGTGGGGTTTTTTTATGCAGAATTTTGTCAAAAGACAAT
GGCGCTGCATGTTTTTCTTTGAGTGCAAATGTACATTGCTAAGATTTTTTTTTAAGATGGCATG
TGCTTTGAAAAGAGAAAATTGCATTTTTAAGAGTTTAAAAATCTTACGAGTGAGAAATATAAGA
AATCTTACTTATTTTCACCTCTTTAGAAAAAAATAAAAGATGTTTCTCATATC

hide sequence

RefSeq Acc Id:

XM_038430654 ⟹ XP_038286582

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	21	41,894,288 - 41,930,625 (+)	NCBI

RefSeq Acc Id:

XM_038505979 ⟹ XP_038361907

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	21	40,886,602 - 40,922,934 (+)	NCBI

RefSeq Acc Id:

XM_038569202 ⟹ XP_038425130

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	21	41,452,829 - 41,489,189 (+)	NCBI

RefSeq Acc Id:

XM_038633394 ⟹ XP_038489322

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	21	41,075,253 - 41,111,663 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_013978133	(Get FASTA)	NCBI Sequence Viewer
	XP_038286582	(Get FASTA)	NCBI Sequence Viewer
	XP_038361907	(Get FASTA)	NCBI Sequence Viewer
	XP_038425130	(Get FASTA)	NCBI Sequence Viewer
	XP_038489322	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000062312.2
	ENSCAFP00030037781.1
	ENSCAFP00040038376.1
	ENSCAFP00845022484
	ENSCAFP00845022484.1

RefSeq Acc Id:

XP_013978133 ⟸ XM_014122658

- UniProtKB:

A0A8C0P8L8 (UniProtKB/TrEMBL), A0A8C0L248 (UniProtKB/TrEMBL), A0A8I3NYI3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MATSSEEVLLIVKKVRQKKQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGKAKIQ
LQLVLHAGDTTNFHFSNESTAVKERDAVKDLLQQLLPKFKRKANKELEEKNRMLQEDPVLFQLY
KDLVVSQVISAEEFWANRLNVNATESSSTSNHKQDVGISAAFLADVRPQTDGCNGLRYNLTSDI
IESIFRTYPAVKMKYAENVPHNMTEKEFWTRFFQSHYFHRDRLNTGSKDLFAECAKIDEKGLKT
MVSLGVKNPLLDLTALEDKSLDEGYGISSVPSTSNSKSIKENSNAAIIKRFNHHSAMVLAAGLR
KQEAQNEQNGEPSSIDGNSGDADCFQPAVKRAKLQESIEYEDLGKNNSIKTIALNLKKSDRYYH
GPTPIQSLQYATSQDIINSFQSIRQEMEAYTPKLTQVLSSSAASSTITTLSPGGALMQGGTQQA
INQMVPNDIQSELKHLYVAVGELLRHFWSCFPVNTPFLEEKVVKMKSNLERFQVTKLCPFQEKI
RRQYLSTNLVSHIEEMLQTAYNKLHKWQSRRLMKKT

hide sequence

RefSeq Acc Id:

ENSCAFP00000062312 ⟸ ENSCAFT00000087493

RefSeq Acc Id:

ENSCAFP00000013505 ⟸ ENSCAFT00000014599

RefSeq Acc Id:

XP_038361907 ⟸ XM_038505979

RefSeq Acc Id:

XP_038489322 ⟸ XM_038633394

RefSeq Acc Id:	XP_038286582 ⟸ XM_038430654
- UniProtKB:	A0A8C0P8L8 (UniProtKB/TrEMBL), A0A8C0L248 (UniProtKB/TrEMBL), A0A8I3NYI3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038425130 ⟸ XM_038569202
- UniProtKB:	A0A8C0L248 (UniProtKB/TrEMBL), A0A8C0P8L8 (UniProtKB/TrEMBL), A0A8I3NYI3 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845022484 ⟸ ENSCAFT00845028576

Protein Domains

BSD

Promoters

RGD ID:

13687264

Promoter ID:

EPDNEW_C5333

Type:

multiple initiation site

Name:

GTF2H1_1

Description:

general transcription factor IIH subunit 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	21	40,770,964 - 40,771,024	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000009171	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030023533	UniProtKB/TrEMBL
	ENSCAFG00040023602	UniProtKB/TrEMBL
	ENSCAFG00845016048	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000087493.2	UniProtKB/TrEMBL
	ENSCAFT00030043292.1	UniProtKB/TrEMBL
	ENSCAFT00040043966.1	UniProtKB/TrEMBL
	ENSCAFT00845028576	ENTREZGENE
	ENSCAFT00845028576.1	UniProtKB/TrEMBL
Gene3D-CATH	2.30.29.30	UniProtKB/TrEMBL
	6.10.140.1200	UniProtKB/TrEMBL
InterPro	BSD_dom	UniProtKB/TrEMBL
	BSD_dom_sf	UniProtKB/TrEMBL
	PH-like_dom_sf	UniProtKB/TrEMBL
	Tfb1/GTF2H1	UniProtKB/TrEMBL
	TFIIH_BTF_p62_N	UniProtKB/TrEMBL
KEGG Report	cfa:476881	UniProtKB/TrEMBL
NCBI Gene	GTF2H1	ENTREZGENE
PANTHER	GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 1	UniProtKB/TrEMBL
	PTHR12856	UniProtKB/TrEMBL
Pfam	BSD	UniProtKB/TrEMBL
	PH_TFIIH	UniProtKB/TrEMBL
PROSITE	BSD	UniProtKB/TrEMBL
SMART	BSD	UniProtKB/TrEMBL
Superfamily-SCOP	PH domain-like	UniProtKB/TrEMBL
	SSF140383	UniProtKB/TrEMBL
UniProt	A0A8C0L248	ENTREZGENE
	A0A8C0P8L8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3NYI3	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:41547	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

RGD Manual Annotations