CDON (cell adhesion associated, oncogene regulated) - Rat Genome Database

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Gene: CDON (cell adhesion associated, oncogene regulated) Canis lupus familiaris
Analyze
Symbol: CDON
Name: cell adhesion associated, oncogene regulated
RGD ID: 12326770
Description: ENCODES a protein that exhibits cell-cell adhesion mediator activity (inferred); INVOLVED IN anterior/posterior pattern specification (ortholog); cell adhesion (ortholog); cell fate specification (ortholog); PARTICIPATES IN Hedgehog signaling pathway; p38 MAPK signaling pathway; ASSOCIATED WITH Chromosome 11, Partial Trisomy 11q (ortholog); coloboma (ortholog); Dwarfism (ortholog); FOUND IN cell surface (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Cdon homolog; cell adhesion molecule-related/down-regulated by oncogenes; LOC102154390; uncharacterized LOC102154390
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.158,439,606 - 8,536,088 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl58,446,346 - 8,533,426 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha58,496,514 - 8,595,988 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.058,391,957 - 8,491,851 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl58,391,716 - 8,489,974 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.158,460,126 - 8,560,018 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.058,434,443 - 8,534,264 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.058,468,718 - 8,568,231 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
axon  (IEA)
cell surface  (ISO)
membrane  (IEA)
plasma membrane  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CDON
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.158,439,606 - 8,536,088 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl58,446,346 - 8,533,426 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha58,496,514 - 8,595,988 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.058,391,957 - 8,491,851 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl58,391,716 - 8,489,974 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.158,460,126 - 8,560,018 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.058,434,443 - 8,534,264 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.058,468,718 - 8,568,231 (+)NCBIUU_Cfam_GSD_1.0
CDON
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811125,956,821 - 126,063,352 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11125,955,796 - 126,063,335 (-)EnsemblGRCh38hg38GRCh38
GRCh3711125,826,716 - 125,933,187 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611125,331,923 - 125,438,397 (-)NCBINCBI36Build 36hg18NCBI36
Build 3411125,335,783 - 125,438,397NCBI
Celera11122,988,054 - 123,098,575 (-)NCBICelera
Cytogenetic Map11q24.2NCBI
HuRef11121,768,684 - 121,875,085 (-)NCBIHuRef
CHM1_111125,713,444 - 125,819,847 (-)NCBICHM1_1
T2T-CHM13v2.011125,985,675 - 126,092,163 (-)NCBIT2T-CHM13v2.0
Cdon
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39935,332,836 - 35,418,948 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl935,332,424 - 35,418,948 (+)EnsemblGRCm39 Ensembl
GRCm38935,421,528 - 35,507,652 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl935,421,128 - 35,507,652 (+)EnsemblGRCm38mm10GRCm38
MGSCv37935,259,661 - 35,315,237 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36935,201,747 - 35,254,013 (+)NCBIMGSCv36mm8
Celera932,686,755 - 32,744,725 (+)NCBICelera
Cytogenetic Map9A4NCBI
cM Map920.24NCBI
Cdon
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8842,032,921 - 42,119,451 (+)NCBIGRCr8
mRatBN7.2833,775,123 - 33,861,635 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl833,806,183 - 33,859,033 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx837,882,852 - 37,935,670 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0836,165,909 - 36,218,724 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0834,028,733 - 34,081,547 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0836,625,757 - 36,712,091 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl836,625,733 - 36,710,949 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0836,642,905 - 36,728,577 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4835,238,899 - 35,291,743 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1835,247,664 - 35,300,509 (+)NCBI
Celera835,227,303 - 35,280,140 (+)NCBICelera
Cytogenetic Map8q21NCBI
Cdon
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541227,003,919 - 27,065,989 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541227,004,391 - 27,093,968 (-)NCBIChiLan1.0ChiLan1.0
CDON
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29126,641,095 - 126,746,315 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111127,750,426 - 127,853,585 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011120,772,160 - 120,877,529 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111124,685,084 - 124,789,649 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11124,685,084 - 124,786,091 (-)Ensemblpanpan1.1panPan2
Cdon
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947108,178,109 - 108,358,526 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365726,176,255 - 6,272,260 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365726,176,267 - 6,268,885 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDON
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl953,079,550 - 53,178,881 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1953,079,543 - 53,178,881 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CDON
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11117,091,778 - 117,255,354 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1117,092,178 - 117,152,030 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660438,742,602 - 8,983,460 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdon
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624812109,405 - 203,519 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624812107,632 - 203,791 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CDON
1399 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 2 1 6 1 6
Low 3 5 21 6 6 6 1 12 8 9
Below cutoff 5

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_014113305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022418110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038474573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038474574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038474575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038474576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038474578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038506663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038506665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038506675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038535703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038535704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038535705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038535706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038535707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038599909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038599910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038599911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038599912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038599913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038664452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038664453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038664454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038664455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038664456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_546414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002626362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002626363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005325246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005325247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005325248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005342649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005342658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005342661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005359087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005359088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005359089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005393585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005393586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005393587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005426689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005426690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005426691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000016704   ⟹   ENSCAFP00000015458
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl58,473,373 - 8,533,426 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000063444   ⟹   ENSCAFP00000044495
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl58,472,104 - 8,533,426 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000078715   ⟹   ENSCAFP00000048087
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl58,446,346 - 8,528,139 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000086881   ⟹   ENSCAFP00000054162
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl58,472,104 - 8,528,139 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845017291   ⟹   ENSCAFP00845013477
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl58,391,716 - 8,489,974 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845017409   ⟹   ENSCAFP00845013556
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl58,402,240 - 8,489,974 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845017501   ⟹   ENSCAFP00845013621
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl58,402,240 - 8,489,974 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845017591   ⟹   ENSCAFP00845013695
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl58,402,240 - 8,489,974 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845017692   ⟹   ENSCAFP00845013775
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl58,402,240 - 8,482,467 (+)Ensembl
RefSeq Acc Id: XM_014113305   ⟹   XP_013968780
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.158,439,606 - 8,536,088 (+)NCBI
Dog10K_Boxer_Tasha58,499,839 - 8,595,988 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038474573   ⟹   XP_038330501
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.158,460,126 - 8,560,018 (+)NCBI
RefSeq Acc Id: XM_038474574   ⟹   XP_038330502
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.158,463,444 - 8,560,018 (+)NCBI
RefSeq Acc Id: XM_038474575   ⟹   XP_038330503
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.158,470,403 - 8,560,018 (+)NCBI
RefSeq Acc Id: XM_038474576   ⟹   XP_038330504
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.158,497,922 - 8,560,018 (+)NCBI
RefSeq Acc Id: XM_038474578   ⟹   XP_038330506
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.158,460,126 - 8,560,018 (+)NCBI
RefSeq Acc Id: XM_038506663   ⟹   XP_038362591
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha58,496,514 - 8,595,988 (+)NCBI
RefSeq Acc Id: XM_038506665   ⟹   XP_038362593
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha58,534,120 - 8,595,988 (+)NCBI
RefSeq Acc Id: XM_038506675   ⟹   XP_038362603
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha58,499,841 - 8,595,988 (+)NCBI
RefSeq Acc Id: XM_038535703   ⟹   XP_038391631
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.058,468,718 - 8,568,231 (+)NCBI
RefSeq Acc Id: XM_038535704   ⟹   XP_038391632
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.058,472,040 - 8,568,231 (+)NCBI
RefSeq Acc Id: XM_038535705   ⟹   XP_038391633
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.058,478,998 - 8,568,231 (+)NCBI
RefSeq Acc Id: XM_038535706   ⟹   XP_038391634
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.058,506,326 - 8,568,231 (+)NCBI
RefSeq Acc Id: XM_038535707   ⟹   XP_038391635
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.058,468,718 - 8,568,231 (+)NCBI
RefSeq Acc Id: XM_038599909   ⟹   XP_038455837
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.058,434,443 - 8,534,264 (+)NCBI
RefSeq Acc Id: XM_038599910   ⟹   XP_038455838
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.058,437,763 - 8,534,264 (+)NCBI
RefSeq Acc Id: XM_038599911   ⟹   XP_038455839
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.058,444,728 - 8,534,264 (+)NCBI
RefSeq Acc Id: XM_038599912   ⟹   XP_038455840
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.058,472,190 - 8,534,264 (+)NCBI
RefSeq Acc Id: XM_038599913   ⟹   XP_038455841
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.058,434,443 - 8,534,264 (+)NCBI
RefSeq Acc Id: XM_038664452   ⟹   XP_038520380
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.058,391,957 - 8,491,851 (+)NCBI
RefSeq Acc Id: XM_038664453   ⟹   XP_038520381
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.058,395,279 - 8,491,851 (+)NCBI
RefSeq Acc Id: XM_038664454   ⟹   XP_038520382
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.058,402,245 - 8,491,851 (+)NCBI
RefSeq Acc Id: XM_038664455   ⟹   XP_038520383
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.058,429,780 - 8,491,851 (+)NCBI
RefSeq Acc Id: XM_038664456   ⟹   XP_038520384
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.058,391,957 - 8,491,851 (+)NCBI
RefSeq Acc Id: XM_546414   ⟹   XP_546414
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.158,446,316 - 8,536,088 (+)NCBI
Dog10K_Boxer_Tasha58,506,775 - 8,595,988 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005325246
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.158,460,126 - 8,554,315 (+)NCBI
RefSeq Acc Id: XR_005325247
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.158,460,126 - 8,555,878 (+)NCBI
RefSeq Acc Id: XR_005325248
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.158,460,126 - 8,554,315 (+)NCBI
RefSeq Acc Id: XR_005342649
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha58,499,837 - 8,590,282 (+)NCBI
RefSeq Acc Id: XR_005342658
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha58,499,837 - 8,591,846 (+)NCBI
RefSeq Acc Id: XR_005342661
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha58,499,837 - 8,590,282 (+)NCBI
RefSeq Acc Id: XR_005359087
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.058,468,718 - 8,562,529 (+)NCBI
RefSeq Acc Id: XR_005359088
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.058,468,718 - 8,564,092 (+)NCBI
RefSeq Acc Id: XR_005359089
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.058,468,718 - 8,562,529 (+)NCBI
RefSeq Acc Id: XR_005393585
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.058,434,443 - 8,528,559 (+)NCBI
RefSeq Acc Id: XR_005393586
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.058,434,443 - 8,530,123 (+)NCBI
RefSeq Acc Id: XR_005393587
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.058,434,443 - 8,528,559 (+)NCBI
RefSeq Acc Id: XR_005426689
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.058,391,957 - 8,486,141 (+)NCBI
RefSeq Acc Id: XR_005426690
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.058,391,957 - 8,487,706 (+)NCBI
RefSeq Acc Id: XR_005426691
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.058,391,957 - 8,486,141 (+)NCBI
Protein Sequences
Protein RefSeqs XP_013968780 (Get FASTA)   NCBI Sequence Viewer  
  XP_038330501 (Get FASTA)   NCBI Sequence Viewer  
  XP_038330502 (Get FASTA)   NCBI Sequence Viewer  
  XP_038330503 (Get FASTA)   NCBI Sequence Viewer  
  XP_038330504 (Get FASTA)   NCBI Sequence Viewer  
  XP_038330506 (Get FASTA)   NCBI Sequence Viewer  
  XP_038362591 (Get FASTA)   NCBI Sequence Viewer  
  XP_038362593 (Get FASTA)   NCBI Sequence Viewer  
  XP_038362603 (Get FASTA)   NCBI Sequence Viewer  
  XP_038391631 (Get FASTA)   NCBI Sequence Viewer  
  XP_038391632 (Get FASTA)   NCBI Sequence Viewer  
  XP_038391633 (Get FASTA)   NCBI Sequence Viewer  
  XP_038391634 (Get FASTA)   NCBI Sequence Viewer  
  XP_038391635 (Get FASTA)   NCBI Sequence Viewer  
  XP_038455837 (Get FASTA)   NCBI Sequence Viewer  
  XP_038455838 (Get FASTA)   NCBI Sequence Viewer  
  XP_038455839 (Get FASTA)   NCBI Sequence Viewer  
  XP_038455840 (Get FASTA)   NCBI Sequence Viewer  
  XP_038455841 (Get FASTA)   NCBI Sequence Viewer  
  XP_038520380 (Get FASTA)   NCBI Sequence Viewer  
  XP_038520381 (Get FASTA)   NCBI Sequence Viewer  
  XP_038520382 (Get FASTA)   NCBI Sequence Viewer  
  XP_038520383 (Get FASTA)   NCBI Sequence Viewer  
  XP_038520384 (Get FASTA)   NCBI Sequence Viewer  
  XP_546414 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000015458.5
  ENSCAFP00000044495.2
  ENSCAFP00000048087.2
  ENSCAFP00000054162.2
  ENSCAFP00040026343.1
  ENSCAFP00040026431.1
  ENSCAFP00845013477
  ENSCAFP00845013477.1
  ENSCAFP00845013556
  ENSCAFP00845013556.1
  ENSCAFP00845013621.1
  ENSCAFP00845013695
  ENSCAFP00845013695.1
  ENSCAFP00845013775.1
Reference Protein Sequences
RefSeq Acc Id: XP_013968780   ⟸   XM_014113305
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KCE1 (UniProtKB/TrEMBL),   A0A8P0NCH2 (UniProtKB/TrEMBL),   A0A8C0YZW4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_546414   ⟸   XM_546414
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KCE1 (UniProtKB/TrEMBL),   A0A8P0NCH2 (UniProtKB/TrEMBL),   A0A8C0YZW4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000048087   ⟸   ENSCAFT00000078715
RefSeq Acc Id: ENSCAFP00000044495   ⟸   ENSCAFT00000063444
RefSeq Acc Id: ENSCAFP00000054162   ⟸   ENSCAFT00000086881
RefSeq Acc Id: ENSCAFP00000015458   ⟸   ENSCAFT00000016704
RefSeq Acc Id: XP_038330501   ⟸   XM_038474573
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038330506   ⟸   XM_038474578
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038330502   ⟸   XM_038474574
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038330503   ⟸   XM_038474575
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038330504   ⟸   XM_038474576
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038455837   ⟸   XM_038599909
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038455841   ⟸   XM_038599913
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038455838   ⟸   XM_038599910
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038455839   ⟸   XM_038599911
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038455840   ⟸   XM_038599912
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038520380   ⟸   XM_038664452
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NBW2 (UniProtKB/TrEMBL),   A0A8C0YZW4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038520384   ⟸   XM_038664456
- Peptide Label: isoform X3
- UniProtKB: A0A8I3N442 (UniProtKB/TrEMBL),   A0A8C0SXC0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038520381   ⟸   XM_038664453
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NBW2 (UniProtKB/TrEMBL),   A0A8C0YZW4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038520382   ⟸   XM_038664454
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NBW2 (UniProtKB/TrEMBL),   A0A8C0YZW4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038520383   ⟸   XM_038664455
- Peptide Label: isoform X2
- UniProtKB: A0A8C0YZW4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038362591   ⟸   XM_038506663
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KCE1 (UniProtKB/TrEMBL),   A0A8P0NCH2 (UniProtKB/TrEMBL),   A0A8C0YZW4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038362603   ⟸   XM_038506675
- Peptide Label: isoform X3
- UniProtKB: A0A8P0SXS9 (UniProtKB/TrEMBL),   A0A8C0SXC0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038362593   ⟸   XM_038506665
- Peptide Label: isoform X2
- UniProtKB: A0A8C0YZW4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038391631   ⟸   XM_038535703
- Peptide Label: isoform X1
- UniProtKB: A0A8C0YZW4 (UniProtKB/TrEMBL),   A0A8I3NBW2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038391635   ⟸   XM_038535707
- Peptide Label: isoform X3
- UniProtKB: A0A8C0SXC0 (UniProtKB/TrEMBL),   A0A8I3N442 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038391632   ⟸   XM_038535704
- Peptide Label: isoform X1
- UniProtKB: A0A8C0YZW4 (UniProtKB/TrEMBL),   A0A8I3NBW2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038391633   ⟸   XM_038535705
- Peptide Label: isoform X1
- UniProtKB: A0A8C0YZW4 (UniProtKB/TrEMBL),   A0A8I3NBW2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038391634   ⟸   XM_038535706
- Peptide Label: isoform X2
- UniProtKB: A0A8C0YZW4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845013477   ⟸   ENSCAFT00845017291
RefSeq Acc Id: ENSCAFP00845013695   ⟸   ENSCAFT00845017591
RefSeq Acc Id: ENSCAFP00845013621   ⟸   ENSCAFT00845017501
RefSeq Acc Id: ENSCAFP00845013775   ⟸   ENSCAFT00845017692
RefSeq Acc Id: ENSCAFP00845013556   ⟸   ENSCAFT00845017409
Protein Domains
Fibronectin type-III   Ig-like

Promoters
RGD ID:13683103
Promoter ID:EPDNEW_C1171
Type:single initiation site
Name:CDON_1
Description:cell adhesion associated, oncogene regulated
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.158,435,630 - 8,435,690EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000010499 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00040016435 UniProtKB/TrEMBL
  ENSCAFG00845009814 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000016704.5 UniProtKB/TrEMBL
  ENSCAFT00000063444.2 UniProtKB/TrEMBL
  ENSCAFT00000078715.2 UniProtKB/TrEMBL
  ENSCAFT00000086881.2 UniProtKB/TrEMBL
  ENSCAFT00040030313.1 UniProtKB/TrEMBL
  ENSCAFT00040030415.1 UniProtKB/TrEMBL
  ENSCAFT00845017291 ENTREZGENE
  ENSCAFT00845017291.1 UniProtKB/TrEMBL
  ENSCAFT00845017409 ENTREZGENE
  ENSCAFT00845017409.1 UniProtKB/TrEMBL
  ENSCAFT00845017501.1 UniProtKB/TrEMBL
  ENSCAFT00845017591 ENTREZGENE
  ENSCAFT00845017591.1 UniProtKB/TrEMBL
  ENSCAFT00845017692.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
KEGG Report cfa:489296 UniProtKB/TrEMBL
NCBI Gene CDON ENTREZGENE
PANTHER FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  PROTEIN SIDEKICK UniProtKB/TrEMBL
  PTHR44170:SF1 UniProtKB/TrEMBL
Pfam fn3 UniProtKB/TrEMBL
  I-set UniProtKB/TrEMBL
  Ig_3 UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
  IG_LIKE UniProtKB/TrEMBL
SMART FN3 UniProtKB/TrEMBL
  IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF49265 UniProtKB/TrEMBL
UniProt A0A8C0KCE1 ENTREZGENE
  A0A8C0SXC0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0YZW4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3N357_CANLF UniProtKB/TrEMBL
  A0A8I3N442 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NBW2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NF44_CANLF UniProtKB/TrEMBL
  A0A8I3NFH1_CANLF UniProtKB/TrEMBL
  A0A8P0NCH2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NY34_CANLF UniProtKB/TrEMBL
  A0A8P0SXS9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0T6K1_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:39076 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-11-21 CDON  cell adhesion associated, oncogene regulated  LOC102154390  uncharacterized LOC102154390  Data merged from RGD:12395766 737654 PROVISIONAL