BCAP29 (B cell receptor associated protein 29) - Rat Genome Database

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Gene: BCAP29 (B cell receptor associated protein 29) Canis lupus familiaris
Analyze
Symbol: BCAP29
Name: B cell receptor associated protein 29
RGD ID: 12322318
Description: INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); protein localization to endoplasmic reticulum exit site (ortholog); ASSOCIATED WITH amenorrhea (ortholog); genetic disease (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred); membrane (inferred); INTERACTS WITH mocetinostat
Type: protein-coding
RefSeq Status: MODEL
Previously known as: B-cell receptor associated protein 29; B-cell receptor-associated protein 29
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11812,969,594 - 13,021,948 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1812,970,411 - 13,022,022 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1812,613,386 - 12,665,745 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01813,240,776 - 13,293,162 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1813,211,079 - 13,292,997 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11813,057,205 - 13,109,556 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01812,977,363 - 13,029,720 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01813,254,746 - 13,307,191 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
mocetinostat  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
BCAP29
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11812,969,594 - 13,021,948 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1812,970,411 - 13,022,022 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1812,613,386 - 12,665,745 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01813,240,776 - 13,293,162 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1813,211,079 - 13,292,997 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11813,057,205 - 13,109,556 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01812,977,363 - 13,029,720 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01813,254,746 - 13,307,191 (-)NCBIUU_Cfam_GSD_1.0
BCAP29
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387107,580,007 - 107,623,317 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7107,580,246 - 107,629,170 (+)EnsemblGRCh38hg38GRCh38
GRCh377107,220,452 - 107,263,762 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367107,007,946 - 107,058,401 (+)NCBINCBI36Build 36hg18NCBI36
Build 347106,814,660 - 106,854,874NCBI
Celera7102,025,694 - 102,069,076 (+)NCBICelera
Cytogenetic Map7q22.3NCBI
HuRef7101,581,486 - 101,624,158 (+)NCBIHuRef
CHM1_17107,154,373 - 107,197,733 (+)NCBICHM1_1
T2T-CHM13v2.07108,896,051 - 108,939,457 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27106,581,511 - 106,624,867 (+)NCBI
Bcap29
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391231,645,353 - 31,684,657 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1231,640,966 - 31,684,657 (-)EnsemblGRCm39 Ensembl
GRCm381231,595,354 - 31,634,658 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1231,590,967 - 31,634,658 (-)EnsemblGRCm38mm10GRCm38
MGSCv371232,280,219 - 32,319,523 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361232,181,110 - 32,219,846 (-)NCBIMGSCv36mm8
Celera1233,045,348 - 33,084,363 (-)NCBICelera
Cytogenetic Map12A2- A3NCBI
cM Map1213.63NCBI
Bcap29
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8653,910,209 - 53,950,206 (-)NCBIGRCr8
mRatBN7.2648,182,702 - 48,222,698 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl648,182,706 - 48,222,720 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx648,490,038 - 48,530,002 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0648,804,954 - 48,844,921 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0648,245,102 - 48,285,067 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0650,883,758 - 50,923,743 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl650,883,787 - 50,923,510 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0659,555,799 - 59,595,751 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4649,464,362 - 49,504,424 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1649,467,488 - 49,507,550 (-)NCBI
Celera647,384,728 - 47,424,848 (-)NCBICelera
Cytogenetic Map6q16NCBI
Bcap29
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541011,934,129 - 11,988,458 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541011,934,158 - 11,988,479 (+)NCBIChiLan1.0ChiLan1.0
BCAP29
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26144,423,236 - 144,466,194 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17192,693,203 - 192,736,162 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0799,559,131 - 99,602,058 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17112,283,078 - 112,325,254 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7112,283,078 - 112,322,422 (+)Ensemblpanpan1.1panPan2
LOC101977061
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511855,376,334 - 55,430,947 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647916,542,969 - 16,555,022 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0 EnsemblNW_00493647916,502,872 - 16,541,760 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647916,502,581 - 16,542,288 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BCAP29
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9107,292,309 - 107,351,981 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19107,292,273 - 107,337,464 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29118,047,000 - 118,090,483 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BCAP29
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12176,501,128 - 76,539,491 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2176,501,663 - 76,543,758 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604227,320,234 - 27,363,497 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bcap29
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473922,121,480 - 22,171,589 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473922,122,859 - 22,171,621 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in BCAP29
547 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 8 10 6
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005630948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005630949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005630950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038423789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038423790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038500145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038500146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038562704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038562705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038626810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038626811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000049909   ⟹   ENSCAFP00000036789
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1812,970,411 - 13,022,022 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845045446   ⟹   ENSCAFP00845035645
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1813,211,079 - 13,292,734 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845045538   ⟹   ENSCAFP00845035719
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1813,240,776 - 13,292,997 (-)Ensembl
RefSeq Acc Id: XM_005630948   ⟹   XP_005631005
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11812,969,594 - 13,021,589 (-)NCBI
Dog10K_Boxer_Tasha1812,613,386 - 12,665,385 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005630950   ⟹   XP_005631007
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11812,969,594 - 13,021,948 (-)NCBI
Dog10K_Boxer_Tasha1812,613,386 - 12,665,745 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038423789   ⟹   XP_038279717
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01813,240,776 - 13,293,162 (-)NCBI
RefSeq Acc Id: XM_038423790   ⟹   XP_038279718
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01813,240,776 - 13,292,802 (-)NCBI
RefSeq Acc Id: XM_038500145   ⟹   XP_038356073
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11813,057,205 - 13,109,556 (-)NCBI
RefSeq Acc Id: XM_038500146   ⟹   XP_038356074
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11813,057,205 - 13,109,196 (-)NCBI
RefSeq Acc Id: XM_038562704   ⟹   XP_038418632
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01813,254,746 - 13,307,191 (-)NCBI
RefSeq Acc Id: XM_038562705   ⟹   XP_038418633
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01813,254,746 - 13,306,831 (-)NCBI
RefSeq Acc Id: XM_038626810   ⟹   XP_038482738
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01812,977,363 - 13,029,720 (-)NCBI
RefSeq Acc Id: XM_038626811   ⟹   XP_038482739
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01812,977,363 - 13,029,386 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_005631007   ⟸   XM_005630950
- UniProtKB: A0A8C0YXP3 (UniProtKB/TrEMBL),   A0A8I3S9M0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005631005   ⟸   XM_005630948
- UniProtKB: A0A8C0YXP3 (UniProtKB/TrEMBL),   A0A8I3S9M0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000036789   ⟸   ENSCAFT00000049909
RefSeq Acc Id: XP_038356073   ⟸   XM_038500145
RefSeq Acc Id: XP_038356074   ⟸   XM_038500146
RefSeq Acc Id: XP_038482738   ⟸   XM_038626810
RefSeq Acc Id: XP_038482739   ⟸   XM_038626811
RefSeq Acc Id: XP_038279717   ⟸   XM_038423789
- UniProtKB: A0A8C0YXP3 (UniProtKB/TrEMBL),   A0A8I3S9M0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038279718   ⟸   XM_038423790
- UniProtKB: A0A8C0YXP3 (UniProtKB/TrEMBL),   A0A8I3S9M0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038418632   ⟸   XM_038562704
- UniProtKB: A0A8C0YXP3 (UniProtKB/TrEMBL),   A0A8I3S9M0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038418633   ⟸   XM_038562705
- UniProtKB: A0A8C0YXP3 (UniProtKB/TrEMBL),   A0A8I3S9M0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845035719   ⟸   ENSCAFT00845045538
RefSeq Acc Id: ENSCAFP00845035645   ⟸   ENSCAFT00845045446
Protein Domains
BAP29/BAP31 transmembrane   Bap31/Bap29 cytoplasmic coiled-coil

Promoters
RGD ID:13686437
Promoter ID:EPDNEW_C4505
Type:initiation region
Name:BCAP29_1
Description:B cell receptor associated protein 29
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11813,021,516 - 13,021,576EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000003912 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030021017 UniProtKB/TrEMBL
  ENSCAFG00040013407 UniProtKB/TrEMBL
  ENSCAFG00845025745 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000049909.4 UniProtKB/TrEMBL
  ENSCAFT00000095809.1 UniProtKB/TrEMBL
  ENSCAFT00030038656.1 UniProtKB/TrEMBL
  ENSCAFT00040024769.1 UniProtKB/TrEMBL
  ENSCAFT00040024838.1 UniProtKB/TrEMBL
  ENSCAFT00040024902.1 UniProtKB/TrEMBL
  ENSCAFT00845045446 ENTREZGENE
  ENSCAFT00845045446.1 UniProtKB/TrEMBL
  ENSCAFT00845045538.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.110 UniProtKB/TrEMBL
InterPro BAP29/BAP31 UniProtKB/TrEMBL
  BAP29/BAP31_N UniProtKB/TrEMBL
  Bap31/Bap29_C UniProtKB/TrEMBL
KEGG Report cfa:475884 UniProtKB/TrEMBL
NCBI Gene BCAP29 ENTREZGENE
PANTHER B-CELL RECEPTOR-ASSOCIATED PROTEIN 29 UniProtKB/TrEMBL
  PTHR12701 UniProtKB/TrEMBL
Pfam Bap31 UniProtKB/TrEMBL
  Bap31_Bap29_C UniProtKB/TrEMBL
UniProt A0A8C0SHL8_CANLF UniProtKB/TrEMBL
  A0A8C0SJ60_CANLF UniProtKB/TrEMBL
  A0A8C0YXP3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PYE6_CANLF UniProtKB/TrEMBL
  A0A8I3S9M0 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:38396 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-12-19 BCAP29  B cell receptor associated protein 29    B-cell receptor associated protein 29  Symbol and/or name change 5135510 APPROVED