TET3 (tet methylcytosine dioxygenase 3) - Rat Genome Database

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Gene: TET3 (tet methylcytosine dioxygenase 3) Canis lupus familiaris
Analyze
Symbol: TET3
Name: tet methylcytosine dioxygenase 3
RGD ID: 12321886
Description: ENCODES a protein that exhibits methyl-CpG binding (inferred); zinc ion binding (inferred); INVOLVED IN DNA demethylation (ortholog); PARTICIPATES IN DNA modification pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); Beck-Fahrner Syndrome (ortholog); Developmental Disabilities (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: methylcytosine dioxygenase TET3; tet oncogene family member 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11748,976,510 - 49,083,454 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1748,981,558 - 49,082,675 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1748,617,212 - 48,723,766 (-)NCBI
ROS_Cfam_1.01749,835,903 - 49,942,545 (-)NCBI
UMICH_Zoey_3.11748,851,775 - 48,958,566 (-)NCBI
UNSW_CanFamBas_1.01748,923,668 - 49,025,715 (-)NCBI
UU_Cfam_GSD_1.01749,477,148 - 49,583,958 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
TET3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11748,976,510 - 49,083,454 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1748,981,558 - 49,082,675 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1748,617,212 - 48,723,766 (-)NCBI
ROS_Cfam_1.01749,835,903 - 49,942,545 (-)NCBI
UMICH_Zoey_3.11748,851,775 - 48,958,566 (-)NCBI
UNSW_CanFamBas_1.01748,923,668 - 49,025,715 (-)NCBI
UU_Cfam_GSD_1.01749,477,148 - 49,583,958 (-)NCBI
TET3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl273,984,910 - 74,108,176 (+)EnsemblGRCh38hg38GRCh38
GRCh38273,982,036 - 74,135,394 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37274,212,037 - 74,335,303 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36274,126,958 - 74,188,811 (+)NCBINCBI36hg18NCBI36
Celera274,104,908 - 74,166,519 (+)NCBI
Cytogenetic Map2p13.1NCBI
HuRef274,009,368 - 74,071,589 (+)NCBIHuRef
CHM1_1274,202,763 - 74,264,628 (+)NCBICHM1_1
Tet3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39683,339,355 - 83,434,190 (-)NCBIGRCm39mm39
GRCm39 Ensembl683,339,355 - 83,436,066 (-)Ensembl
GRCm38683,362,373 - 83,457,208 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl683,362,373 - 83,459,084 (-)EnsemblGRCm38mm10GRCm38
MGSCv37683,312,367 - 83,391,672 (-)NCBIGRCm37mm9NCBIm37
MGSCv36683,328,031 - 83,424,742 (-)NCBImm8
Celera685,343,470 - 85,422,764 (-)NCBICelera
Cytogenetic Map6C3NCBI
Tet3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24115,867,412 - 115,964,433 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl4115,871,265 - 115,964,193 (-)Ensembl
Rnor_6.04115,060,702 - 115,160,800 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4115,066,309 - 115,157,263 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04179,650,812 - 179,747,154 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44117,582,351 - 117,659,282 (-)NCBIRGSC3.4rn4RGSC3.4
Celera4104,861,292 - 104,961,373 (-)NCBICelera
Cytogenetic Map4q34NCBI
Tet3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542411,617,993 - 11,714,203 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542411,612,124 - 11,722,130 (-)NCBIChiLan1.0ChiLan1.0
TET3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A75,568,636 - 75,688,698 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A75,568,636 - 75,682,701 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A74,058,948 - 74,180,046 (+)NCBIMhudiblu_PPA_v0panPan3
Tet3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629210,346,237 - 10,447,001 (-)NCBI
SpeTri2.0NW_004936556292,551 - 391,644 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TET3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl368,918,933 - 69,020,986 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1368,918,896 - 69,020,406 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2372,074,722 - 72,176,883 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TET3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11433,170,046 - 33,293,128 (-)NCBI
ChlSab1.1 Ensembl1433,176,039 - 33,293,906 (-)Ensembl
Vero_WHO_p1.0NW_02366604578,871,684 - 78,997,138 (+)NCBI
Tet3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474929,371,674 - 29,494,785 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 1 3
Low 4 4 22 6 6 6 3 2 12 8 10 6
Below cutoff 1 4

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005630554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005630555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022404807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022404808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038499145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038499146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038499147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038561732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038561733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038561734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038625774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038625775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038625776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038691704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038691705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038691706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000013873   ⟹   ENSCAFP00000012834
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1748,981,558 - 49,082,675 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000076321   ⟹   ENSCAFP00000048235
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1748,981,558 - 49,037,657 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000088695   ⟹   ENSCAFP00000066311
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1748,982,550 - 49,067,580 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000092023   ⟹   ENSCAFP00000048835
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1748,981,558 - 49,082,675 (-)Ensembl
RefSeq Acc Id: XM_005630554   ⟹   XP_005630611
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11748,976,510 - 49,083,453 (-)NCBI
Dog10K_Boxer_Tasha1748,617,212 - 48,723,766 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005630555   ⟹   XP_005630612
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11748,976,510 - 49,067,210 (-)NCBI
Dog10K_Boxer_Tasha1748,617,212 - 48,707,938 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022404807   ⟹   XP_022260515
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11748,976,510 - 49,083,454 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022404808   ⟹   XP_022260516
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11748,976,510 - 49,072,632 (-)NCBI
Dog10K_Boxer_Tasha1748,617,212 - 48,713,490 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038499145   ⟹   XP_038355073
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11748,851,775 - 48,958,566 (-)NCBI
RefSeq Acc Id: XM_038499146   ⟹   XP_038355074
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11748,851,775 - 48,942,825 (-)NCBI
RefSeq Acc Id: XM_038499147   ⟹   XP_038355075
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11748,851,775 - 48,948,375 (-)NCBI
RefSeq Acc Id: XM_038561732   ⟹   XP_038417660
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01749,477,148 - 49,583,958 (-)NCBI
RefSeq Acc Id: XM_038561733   ⟹   XP_038417661
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01749,477,148 - 49,568,125 (-)NCBI
RefSeq Acc Id: XM_038561734   ⟹   XP_038417662
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01749,477,148 - 49,573,677 (-)NCBI
RefSeq Acc Id: XM_038625774   ⟹   XP_038481702
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01748,923,668 - 49,025,715 (-)NCBI
RefSeq Acc Id: XM_038625775   ⟹   XP_038481703
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01748,923,668 - 49,009,898 (-)NCBI
RefSeq Acc Id: XM_038625776   ⟹   XP_038481704
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01748,923,668 - 49,015,442 (-)NCBI
RefSeq Acc Id: XM_038691704   ⟹   XP_038547632
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01749,835,903 - 49,942,545 (-)NCBI
RefSeq Acc Id: XM_038691705   ⟹   XP_038547633
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01749,835,903 - 49,926,707 (-)NCBI
RefSeq Acc Id: XM_038691706   ⟹   XP_038547634
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01749,835,903 - 49,932,258 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_005630611   ⟸   XM_005630554
- Peptide Label: isoform X1
- UniProtKB: F1PBJ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005630612   ⟸   XM_005630555
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_022260515   ⟸   XM_022404807
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_022260516   ⟸   XM_022404808
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCAFP00000066311   ⟸   ENSCAFT00000088695
RefSeq Acc Id: ENSCAFP00000048235   ⟸   ENSCAFT00000076321
RefSeq Acc Id: ENSCAFP00000012834   ⟸   ENSCAFT00000013873
RefSeq Acc Id: ENSCAFP00000048835   ⟸   ENSCAFT00000092023
RefSeq Acc Id: XP_038355073   ⟸   XM_038499145
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038355075   ⟸   XM_038499147
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038355074   ⟸   XM_038499146
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038481702   ⟸   XM_038625774
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038481704   ⟸   XM_038625776
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038481703   ⟸   XM_038625775
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038547632   ⟸   XM_038691704
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038547634   ⟸   XM_038691706
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038547633   ⟸   XM_038691705
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038417660   ⟸   XM_038561732
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038417662   ⟸   XM_038561734
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038417661   ⟸   XM_038561733
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000008728 Ensembl, ENTREZGENE
Ensembl Protein ENSCAFP00000012834 ENTREZGENE
  ENSCAFP00000048235 ENTREZGENE
NCBI Gene TET3 ENTREZGENE
UniProt F1PBJ1 ENTREZGENE
VGNC ID VGNC:47262 ENTREZGENE