LOC100855486 (mitochondrial import receptor subunit TOM22 homolog) - Rat Genome Database

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Gene: LOC100855486 (mitochondrial import receptor subunit TOM22 homolog) Canis lupus familiaris
Analyze
No known orthologs.
Symbol: LOC100855486
Name: mitochondrial import receptor subunit TOM22 homolog
RGD ID: 12321016
Description: INVOLVED IN intracellular protein transport (inferred); protein transport (inferred); FOUND IN membrane (inferred); mitochondrial outer membrane (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1935,056,808 - 35,057,304 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha934,285,851 - 34,286,359 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0935,867,118 - 35,867,610 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1934,648,322 - 34,648,812 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0934,933,844 - 34,934,352 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0935,021,367 - 35,021,875 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in LOC100855486
5 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium
Low
Below cutoff 5 5 21 6 6 6 6 5 11 8 10 6

Sequence


Reference Sequences
RefSeq Acc Id: XM_003639277   ⟹   XP_003639325
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1935,056,808 - 35,057,304 (-)NCBI
Dog10K_Boxer_Tasha934,285,851 - 34,286,359 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038484517   ⟹   XP_038340445
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1934,648,322 - 34,648,812 (-)NCBI
RefSeq Acc Id: XM_038546036   ⟹   XP_038401964
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0935,021,367 - 35,021,875 (-)NCBI
RefSeq Acc Id: XM_038610065   ⟹   XP_038465993
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0934,933,844 - 34,934,352 (-)NCBI
RefSeq Acc Id: XM_038675128   ⟹   XP_038531056
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0935,867,118 - 35,867,610 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_003639325   ⟸   XM_003639277
- UniProtKB: A0A8C0PWK0 (UniProtKB/TrEMBL),   A0A8C0JLJ4 (UniProtKB/TrEMBL),   A0A8I3PRQ6 (UniProtKB/TrEMBL),   A0A8C0QH39 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038340445   ⟸   XM_038484517
RefSeq Acc Id: XP_038465993   ⟸   XM_038610065
RefSeq Acc Id: XP_038531056   ⟸   XM_038675128
- UniProtKB: A0A8C0PWK0 (UniProtKB/TrEMBL),   A0A8C0JLJ4 (UniProtKB/TrEMBL),   A0A8I3PRQ6 (UniProtKB/TrEMBL),   A0A8C0QH39 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038401964   ⟸   XM_038546036
- UniProtKB: A0A8C0JLJ4 (UniProtKB/TrEMBL),   A0A8C0PWK0 (UniProtKB/TrEMBL),   A0A8C0QH39 (UniProtKB/TrEMBL),   A0A8I3PRQ6 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000017738 UniProtKB/TrEMBL
  ENSCAFG00030025015 UniProtKB/TrEMBL
  ENSCAFG00040002046 UniProtKB/TrEMBL
  ENSCAFG00040006729 UniProtKB/TrEMBL
  ENSCAFG00845027180 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000028137.4 UniProtKB/TrEMBL
  ENSCAFT00030046118.1 UniProtKB/TrEMBL
  ENSCAFT00040003885.1 UniProtKB/TrEMBL
  ENSCAFT00040012521.1 UniProtKB/TrEMBL
  ENSCAFT00845047893 ENTREZGENE
  ENSCAFT00845047893.1 UniProtKB/TrEMBL
InterPro Tom22 UniProtKB/TrEMBL
KEGG Report cfa:100855486 UniProtKB/TrEMBL
NCBI Gene LOC100855486 ENTREZGENE
PANTHER MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM22 HOMOLOG UniProtKB/TrEMBL
  PTHR12504 UniProtKB/TrEMBL
Pfam Tom22 UniProtKB/TrEMBL
UniProt A0A8C0JLJ4 ENTREZGENE
  A0A8C0PWK0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0QH39 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PRQ6 ENTREZGENE, UniProtKB/TrEMBL