PDCL (phosducin like) - Rat Genome Database

Name: PDCL
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: PDCL (phosducin like) Canis lupus familiaris

Analyze

Symbol:

PDCL

Name:

phosducin like

RGD ID:

12320890

Description:

ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN heterotrimeric G-protein complex assembly (ortholog); negative regulation of protein refolding (ortholog); protein folding (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

phosducin-like protein

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PDCL (phosducin like)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, Treefam
Mus musculus (house mouse):	Pdcl (phosducin-like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Pdcl (phosducin like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pdcl (phosducin like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PDCL (phosducin like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pdcl (phosducin like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PDCL (phosducin like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PDCL (phosducin like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pdcl (phosducin like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	59,945,988 - 59,955,295 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	59,947,559 - 59,954,040 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	59,141,008 - 59,151,402 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	60,865,030 - 60,875,272 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	60,865,050 - 60,875,466 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	59,623,931 - 59,634,368 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	59,939,017 - 59,949,339 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	60,032,008 - 60,042,696 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

heterotrimeric G-protein complex assembly (IEA,ISO)

negative regulation of protein refolding (ISO)

positive regulation of smoothened signaling pathway (IEA)

protein folding (ISO)

regulation of G protein-coupled receptor signaling pathway (IEA)

visual perception (IEA,ISO)

Cellular Component

cytoplasm (IEA)

Molecular Function

protein binding (ISO)

protein-containing complex binding (ISO)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

PDCL
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	59,945,988 - 59,955,295 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	59,947,559 - 59,954,040 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	59,141,008 - 59,151,402 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	60,865,030 - 60,875,272 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	60,865,050 - 60,875,466 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	59,623,931 - 59,634,368 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	59,939,017 - 59,949,339 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	60,032,008 - 60,042,696 (+)	NCBI		UU_Cfam_GSD_1.0

PDCL
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	122,818,097 - 122,828,588 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	122,798,389 - 122,828,588 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	125,580,376 - 125,590,867 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	124,620,444 - 124,630,661 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	122,659,343 - 122,670,464	NCBI
Celera	9	96,228,719 - 96,239,278 (-)	NCBI		Celera
Cytogenetic Map	9	q33.2	NCBI
HuRef	9	95,194,963 - 95,205,522 (-)	NCBI		HuRef
CHM1_1	9	125,728,203 - 125,738,762 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	135,015,449 - 135,025,940 (-)	NCBI		T2T-CHM13v2.0

Pdcl
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	37,240,086 - 37,249,832 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	37,240,086 - 37,249,344 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	37,350,074 - 37,359,820 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	37,350,074 - 37,359,332 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	37,205,594 - 37,214,852 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	37,172,083 - 37,181,241 (-)	NCBI		MGSCv36	mm8
Celera	2	37,034,073 - 37,043,333 (-)	NCBI		Celera
Cytogenetic Map	2	B	NCBI
cM Map	2	24.19	NCBI

Pdcl
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	41,519,953 - 41,529,545 (-)	NCBI		GRCr8
mRatBN7.2	3	21,110,165 - 21,119,763 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	21,110,167 - 21,119,715 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	24,578,973 - 24,587,995 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	33,163,935 - 33,172,957 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	30,974,724 - 30,983,752 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	21,602,349 - 21,609,821 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	21,601,816 - 21,609,853 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	26,841,569 - 26,849,041 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	17,107,429 - 17,116,454 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	17,003,800 - 17,012,826 (-)	NCBI
Celera	3	19,546,249 - 19,555,274 (-)	NCBI		Celera
Cytogenetic Map	3	q11	NCBI

Pdcl
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955419	5,121,535 - 5,134,087 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955419	5,123,490 - 5,132,092 (+)	NCBI	ChiLan1.0	ChiLan1.0

PDCL
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	16,516,967 - 16,527,906 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	16,519,929 - 16,530,246 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	93,949,613 - 93,959,913 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	122,283,877 - 122,294,174 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	122,283,877 - 122,294,174 (-)	Ensembl	panpan1.1		panPan2

Pdcl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	191,538,715 - 191,555,000 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	11,306,778 - 11,323,571 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	11,309,073 - 11,323,529 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PDCL
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	263,747,703 - 263,759,543 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	263,747,900 - 263,759,610 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	297,212,592 - 297,222,610 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PDCL
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	15,300,100 - 15,309,079 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	15,299,749 - 15,310,729 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666079	755,225 - 763,976 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pdcl
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	12,088,762 - 12,095,067 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624760	12,088,965 - 12,096,994 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in PDCL
132 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium			13		3		6		9		10
Low	5	5	9	6	3	6		6	3	8		6
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005625400	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022423876	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038487518	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038487519	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038487520	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038549450	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038549451	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038549452	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038613380	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038613381	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038613382	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038678685	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038678686	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038678687	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_847138	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000095	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000046600 ⟹ ENSCAFP00000037914

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	9	59,947,559 - 59,954,040 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845023597 ⟹ ENSCAFP00845018521

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	9	60,865,050 - 60,875,466 (+)	Ensembl

RefSeq Acc Id:

XM_005625400 ⟹ XP_005625457

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	9	59,945,998 - 59,955,295 (+)	NCBI
Dog10K_Boxer_Tasha	9	59,141,009 - 59,151,402 (+)	NCBI

Sequence:

show sequence

CGCGGCGGCTTTTCTTAGCGCTCGAGGCGCCGATACACTCACTTCTCTTCGTCCACCGGAGTGT
GCTCCCTTCCTTCCGAAGTCCCTGGAGCCGCCAGCCCGAAGGATCCGGACTGCGCTAGGCCGGG
TAACTGCCCTGAGGCACCATGACGACCCTGGATGATAAGTTGCTGGGGGAGAAGCTGCAATACT
ATTACAGCAGCAGTGAGGATGAGGACAGCGACCATGAAGACAAGGATGGGGGCAGGGGTGCGCT
GGCTGGCACTTCGATGCCAGCAGATGCTGAGTTGGCAGGCGAAGGCATCTCAGTCAACACAGGT
CCAAAAGGGGTGATAAATGACTGGCGCCGCTTCAAACAGTTGGAGACAGAGCAAAGGGAGGAGC
AGTGTCAGGAAATGGAAAGGCTGGTCAAGAAGCTGTCAATGACATGCAGGTCCCATCTGGATGA
AGAGGAGGACCAACACAGGCAGAAGGACCTCCAGGAGAAGATCAGCGGGAAGATGACTCTGAAG
GAGTTTGCCGTGATGAATGAGGACCAAGATGACGAAGAGTTTCTCCAAAAGTATAGGAAGCAGA
GAATGGAAGAGATGCGGCAGCAGCTTCATAAGGGGCCCCAGTTCAAGAAGGTTTTTGAGATCCC
TAGTGGAGAAGGGTTTTTGGACATGATTGATAAAGAACAGAAAAGCACCCTCATCATGGTCCAT
ATTTATGAGGATGGCATTCCGGGGACCGAAGCCATGAATGGCTGCATGATTTGCCTTGCTGCCG
AGTACCCAGCTGTCAAATTTTGCCGAGTCAAGAGCTCAGTTATTGGGGCCAGCAGTCGCTTCAC
CAGGAATGCCCTTCCTGCCCTGCTGATCTACAAAGGTGGTGAATTGATTGGCAATTTTGTTCGT
GTCACTGACCAGCTGGGGGAAGATTTCTTCGCTGTGGACCTTGAAGCTTTTCTACAGGAATTTG
GATTGCTCCCAGAAAAGGAAGTCTTGGTGCTGACGTCCGTGCGTAACTCTGCCACCTGTCACAG
TGAGGATAGCGATTTGGAAATAGATTGAACTGCCAGTCTAATTGCATAGATTTCTCATTGTTTG
GGCTGGAAGACACATGTCTGGGTATTTATTTCTGTTCCTTCCTGTGTCATGTGGTTTTTCAGCT
GTTCTTTGTAGTCCCTTTTATTATATGTAAAGGCAAGAAATTCTTAGATTAAATGGGAATGTTG
CATCACCTTGTGGCTAGCAGTAAAGTGACTTAAAATTGTATAAACAGGAAGCCGGGCTTTTGAA
CTGTTTACTTAAGATTCTCTAGCATGACATCTCTGTTATTGTTTCTAGTCAATATTTACATAAC
ATCCTAAAGACAGTGTCCTGGAAATTGTCTTCAGACCTCAGAGCTCTCTGCCAGGCCTGGGAGT
ATAATTCTGTAGTTAGTGTGTTATTTGCAACATAAATAGTGTGTCTCCTTCATCAAGATTATAA
ATTGTATTTACTTGTAATCAGATCCATAGTCCTGGAAGGCAGGACTAAATTTTTAAATTTTTAC
CTGAGACCGTTCTCCACCAGGGTCTTGTTTAAAGGTTCCAGACAATGTATGTTTGTCCCATCAA
GAGGGCAGCTTGATGCTGGAGCCAGTGCCCTGCTCAAGCATTATTAAGTCTTGAAGAGGAGGAA
AGATTGATGCTGCCTGCCCTCCTGATGCTGGAAGGCCAGCTTGATTTAAGAATCAGAGCTGATT
TGAAGCTGGGAAGCCTTTTTTAAAGGAGGGTTTCTCAATAAGATACTCCTGCTCATTTTTTGTC
TGTCTGTCTTTTATTTAACAATGTGACTTTTTGTTTTCATGTAGCTTTTTAAAAATCTTCCTCT
CAATCTCTCCCTCCCTCTCTCTCTGTCTCTCTCTCTTTTTGCATATTAGAAAAGTAATATTTAA
CAGAGGAACATTTGCCAAACAACAGAAGTGAAAAGAAGAAAGAATAATATCTAATGTTGCCCAG
AAGAAAACACTATTAATATTTTGGCATATTTCCCTCCATCGTATTTTCTTTGTAGACGTAGACA
TTTTGGTTGTTTGTAAACAAAACAATGGGATCATTCTGAACATACTGTTTTATAGTATGGTCAG
CTATTATAGATCAAACTTTTTTTTCATGTTATTAAATAATCTGCAACACTGTAAAAATGGCCAT
CGACAGTCCACCATGTAGATAATGCTGAGTTACTTGGTGGTTATGTCTTAAAAAAAAAAACAAT
GACTTTTTACTACAAAAGTAATAGATGTCCATTGTAGAAAATGTAACACAAATTGTTAAGCTAA
AAA

hide sequence

RefSeq Acc Id:

XM_022423876 ⟹ XP_022279584

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	9	59,946,486 - 59,955,295 (+)	NCBI
Dog10K_Boxer_Tasha	9	59,142,313 - 59,151,402 (+)	NCBI

Sequence:

show sequence

CGCTTCCTCCCCGGAGGCCCCGCCCTCATCGAGCACGCCCCTGCTCTGCCTCCCTGACCTGCAC
CGTCTGGGCCCCTTCATGCCTCTCTAAGCTTGTTCTGGCCTCCCGCGGCCCCCCACAACTCCCC
TGTACCTGCATGTTCTTTCCATCAACCCTGCTTCTCCCGCACCGACCCAGCCTTCTCCCCGCAT
GTGCTTAGTGAATAGTGCGGCGGCCGGATGGTGGTGGACCTCGGAGGTCCCTGCTTTCGAGAGG
CCCTCGCCCCATGAGAGAGCCAGTAGTAAGGAGTTTAGAGGCCTGGTGATAAGTGTTTAATGAA
GGAAGCATAGTATTGCGATGCTAAGAGGCGGGACTAGAGTTGTCCCCCCCTTGCTGGAAGGGCA
GGCTGGCCTTTTCCCCAAGTGCCGTTGGCTTCTGCTGATGCGGAATCTTGGCCCCAACCACTGT
CCCTTAAATTCTTGGGAATTAGTAAAATCTTGTCATGGGCCCTTTTAACCAAAGTTGGTAGTGA
CTCCCACAGCTCATGGGTCCACCACAGTGTGCTCTGCAGGAAGTTGGAGGCAAGAGACAGGCAC
CATGACGACCCTGGATGATAAGTTGCTGGGGGAGAAGCTGCAATACTATTACAGCAGCAGTGAG
GATGAGGACAGCGACCATGAAGACAAGGATGGGGGCAGGGGTGCGCTGGCTGGCACTTCGATGC
CAGCAGATGCTGAGTTGGCAGGCGAAGGCATCTCAGTCAACACAGGTCCAAAAGGGGTGATAAA
TGACTGGCGCCGCTTCAAACAGTTGGAGACAGAGCAAAGGGAGGAGCAGTGTCAGGAAATGGAA
AGGCTGGTCAAGAAGCTGTCAATGACATGCAGGTCCCATCTGGATGAAGAGGAGGACCAACACA
GGCAGAAGGACCTCCAGGAGAAGATCAGCGGGAAGATGACTCTGAAGGAGTTTGCCGTGATGAA
TGAGGACCAAGATGACGAAGAGTTTCTCCAAAAGTATAGGAAGCAGAGAATGGAAGAGATGCGG
CAGCAGCTTCATAAGGGGCCCCAGTTCAAGAAGGTTTTTGAGATCCCTAGTGGAGAAGGGTTTT
TGGACATGATTGATAAAGAACAGAAAAGCACCCTCATCATGGTCCATATTTATGAGGATGGCAT
TCCGGGGACCGAAGCCATGAATGGCTGCATGATTTGCCTTGCTGCCGAGTACCCAGCTGTCAAA
TTTTGCCGAGTCAAGAGCTCAGTTATTGGGGCCAGCAGTCGCTTCACCAGGAATGCCCTTCCTG
CCCTGCTGATCTACAAAGGTGGTGAATTGATTGGCAATTTTGTTCGTGTCACTGACCAGCTGGG
GGAAGATTTCTTCGCTGTGGACCTTGAAGCTTTTCTACAGGAATTTGGATTGCTCCCAGAAAAG
GAAGTCTTGGTGCTGACGTCCGTGCGTAACTCTGCCACCTGTCACAGTGAGGATAGCGATTTGG
AAATAGATTGAACTGCCAGTCTAATTGCATAGATTTCTCATTGTTTGGGCTGGAAGACACATGT
CTGGGTATTTATTTCTGTTCCTTCCTGTGTCATGTGGTTTTTCAGCTGTTCTTTGTAGTCCCTT
TTATTATATGTAAAGGCAAGAAATTCTTAGATTAAATGGGAATGTTGCATCACCTTGTGGCTAG
CAGTAAAGTGACTTAAAATTGTATAAACAGGAAGCCGGGCTTTTGAACTGTTTACTTAAGATTC
TCTAGCATGACATCTCTGTTATTGTTTCTAGTCAATATTTACATAACATCCTAAAGACAGTGTC
CTGGAAATTGTCTTCAGACCTCAGAGCTCTCTGCCAGGCCTGGGAGTATAATTCTGTAGTTAGT
GTGTTATTTGCAACATAAATAGTGTGTCTCCTTCATCAAGATTATAAATTGTATTTACTTGTAA
TCAGATCCATAGTCCTGGAAGGCAGGACTAAATTTTTAAATTTTTACCTGAGACCGTTCTCCAC
CAGGGTCTTGTTTAAAGGTTCCAGACAATGTATGTTTGTCCCATCAAGAGGGCAGCTTGATGCT
GGAGCCAGTGCCCTGCTCAAGCATTATTAAGTCTTGAAGAGGAGGAAAGATTGATGCTGCCTGC
CCTCCTGATGCTGGAAGGCCAGCTTGATTTAAGAATCAGAGCTGATTTGAAGCTGGGAAGCCTT
TTTTAAAGGAGGGTTTCTCAATAAGATACTCCTGCTCATTTTTTGTCTGTCTGTCTTTTATTTA
ACAATGTGACTTTTTGTTTTCATGTAGCTTTTTAAAAATCTTCCTCTCAATCTCTCCCTCCCTC
TCTCTCTGTCTCTCTCTCTTTTTGCATATTAGAAAAGTAATATTTAACAGAGGAACATTTGCCA
AACAACAGAAGTGAAAAGAAGAAAGAATAATATCTAATGTTGCCCAGAAGAAAACACTATTAAT
ATTTTGGCATATTTCCCTCCATCGTATTTTCTTTGTAGACGTAGACATTTTGGTTGTTTGTAAA
CAAAACAATGGGATCATTCTGAACATACTGTTTTATAGTATGGTCAGCTATTATAGATCAAACT
TTTTTTTCATGTTATTAAATAATCTGCAACACTGTAAAAATGGCCATCGACAGTCCACCATGTA
GATAATGCTGAGTTACTTGGTGGTTATGTCTTAAAAAAAAAAACAATGACTTTTTACTACAAAA
GTAATAGATGTCCATTGTAGAAAATGTAACACAAATTGTTAAGCTAAAAA

hide sequence

RefSeq Acc Id:

XM_038487518 ⟹ XP_038343446

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	9	59,623,932 - 59,634,368 (+)	NCBI

RefSeq Acc Id:

XM_038487519 ⟹ XP_038343447

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	9	59,623,931 - 59,634,368 (+)	NCBI

RefSeq Acc Id:

XM_038487520 ⟹ XP_038343448

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	9	59,625,289 - 59,634,368 (+)	NCBI

RefSeq Acc Id:

XM_038549450 ⟹ XP_038405378

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	9	60,032,009 - 60,042,696 (+)	NCBI

RefSeq Acc Id:

XM_038549451 ⟹ XP_038405379

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	9	60,032,008 - 60,042,696 (+)	NCBI

RefSeq Acc Id:

XM_038549452 ⟹ XP_038405380

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	9	60,033,611 - 60,042,696 (+)	NCBI

RefSeq Acc Id:

XM_038613380 ⟹ XP_038469308

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	9	59,939,018 - 59,949,339 (+)	NCBI

RefSeq Acc Id:

XM_038613381 ⟹ XP_038469309

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	9	59,939,017 - 59,949,339 (+)	NCBI

RefSeq Acc Id:

XM_038613382 ⟹ XP_038469310

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	9	59,940,347 - 59,949,339 (+)	NCBI

RefSeq Acc Id:

XM_038678685 ⟹ XP_038534613

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	9	60,865,031 - 60,875,272 (+)	NCBI

RefSeq Acc Id:

XM_038678686 ⟹ XP_038534614

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	9	60,865,030 - 60,875,272 (+)	NCBI

RefSeq Acc Id:

XM_038678687 ⟹ XP_038534615

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	9	60,866,386 - 60,875,272 (+)	NCBI

RefSeq Acc Id:

XM_847138 ⟹ XP_852231

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	9	59,945,988 - 59,955,295 (+)	NCBI
Dog10K_Boxer_Tasha	9	59,141,008 - 59,151,402 (+)	NCBI

Sequence:

show sequence

CAGTCGGGACCGCGGCGGCTTTTCTTAGCGCTCGAGGCGCCGATACACTCACTTCTCTTCGTCC
ACCGGAGTGTGCTCCCTTCCTTCCGAAGTCCCTGGAGCCGCCAGCCCGAAGGATCCGGACTGCG
CTAGGCCGGGCACCATGACGACCCTGGATGATAAGTTGCTGGGGGAGAAGCTGCAATACTATTA
CAGCAGCAGTGAGGATGAGGACAGCGACCATGAAGACAAGGATGGGGGCAGGGGTGCGCTGGCT
GGCACTTCGATGCCAGCAGATGCTGAGTTGGCAGGCGAAGGCATCTCAGTCAACACAGGTCCAA
AAGGGGTGATAAATGACTGGCGCCGCTTCAAACAGTTGGAGACAGAGCAAAGGGAGGAGCAGTG
TCAGGAAATGGAAAGGCTGGTCAAGAAGCTGTCAATGACATGCAGGTCCCATCTGGATGAAGAG
GAGGACCAACACAGGCAGAAGGACCTCCAGGAGAAGATCAGCGGGAAGATGACTCTGAAGGAGT
TTGCCGTGATGAATGAGGACCAAGATGACGAAGAGTTTCTCCAAAAGTATAGGAAGCAGAGAAT
GGAAGAGATGCGGCAGCAGCTTCATAAGGGGCCCCAGTTCAAGAAGGTTTTTGAGATCCCTAGT
GGAGAAGGGTTTTTGGACATGATTGATAAAGAACAGAAAAGCACCCTCATCATGGTCCATATTT
ATGAGGATGGCATTCCGGGGACCGAAGCCATGAATGGCTGCATGATTTGCCTTGCTGCCGAGTA
CCCAGCTGTCAAATTTTGCCGAGTCAAGAGCTCAGTTATTGGGGCCAGCAGTCGCTTCACCAGG
AATGCCCTTCCTGCCCTGCTGATCTACAAAGGTGGTGAATTGATTGGCAATTTTGTTCGTGTCA
CTGACCAGCTGGGGGAAGATTTCTTCGCTGTGGACCTTGAAGCTTTTCTACAGGAATTTGGATT
GCTCCCAGAAAAGGAAGTCTTGGTGCTGACGTCCGTGCGTAACTCTGCCACCTGTCACAGTGAG
GATAGCGATTTGGAAATAGATTGAACTGCCAGTCTAATTGCATAGATTTCTCATTGTTTGGGCT
GGAAGACACATGTCTGGGTATTTATTTCTGTTCCTTCCTGTGTCATGTGGTTTTTCAGCTGTTC
TTTGTAGTCCCTTTTATTATATGTAAAGGCAAGAAATTCTTAGATTAAATGGGAATGTTGCATC
ACCTTGTGGCTAGCAGTAAAGTGACTTAAAATTGTATAAACAGGAAGCCGGGCTTTTGAACTGT
TTACTTAAGATTCTCTAGCATGACATCTCTGTTATTGTTTCTAGTCAATATTTACATAACATCC
TAAAGACAGTGTCCTGGAAATTGTCTTCAGACCTCAGAGCTCTCTGCCAGGCCTGGGAGTATAA
TTCTGTAGTTAGTGTGTTATTTGCAACATAAATAGTGTGTCTCCTTCATCAAGATTATAAATTG
TATTTACTTGTAATCAGATCCATAGTCCTGGAAGGCAGGACTAAATTTTTAAATTTTTACCTGA
GACCGTTCTCCACCAGGGTCTTGTTTAAAGGTTCCAGACAATGTATGTTTGTCCCATCAAGAGG
GCAGCTTGATGCTGGAGCCAGTGCCCTGCTCAAGCATTATTAAGTCTTGAAGAGGAGGAAAGAT
TGATGCTGCCTGCCCTCCTGATGCTGGAAGGCCAGCTTGATTTAAGAATCAGAGCTGATTTGAA
GCTGGGAAGCCTTTTTTAAAGGAGGGTTTCTCAATAAGATACTCCTGCTCATTTTTTGTCTGTC
TGTCTTTTATTTAACAATGTGACTTTTTGTTTTCATGTAGCTTTTTAAAAATCTTCCTCTCAAT
CTCTCCCTCCCTCTCTCTCTGTCTCTCTCTCTTTTTGCATATTAGAAAAGTAATATTTAACAGA
GGAACATTTGCCAAACAACAGAAGTGAAAAGAAGAAAGAATAATATCTAATGTTGCCCAGAAGA
AAACACTATTAATATTTTGGCATATTTCCCTCCATCGTATTTTCTTTGTAGACGTAGACATTTT
GGTTGTTTGTAAACAAAACAATGGGATCATTCTGAACATACTGTTTTATAGTATGGTCAGCTAT
TATAGATCAAACTTTTTTTTCATGTTATTAAATAATCTGCAACACTGTAAAAATGGCCATCGAC
AGTCCACCATGTAGATAATGCTGAGTTACTTGGTGGTTATGTCTTAAAAAAAAAAACAATGACT
TTTTACTACAAAAGTAATAGATGTCCATTGTAGAAAATGTAACACAAATTGTTAAGCTAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005625457	(Get FASTA)	NCBI Sequence Viewer
	XP_022279584	(Get FASTA)	NCBI Sequence Viewer
	XP_038343446	(Get FASTA)	NCBI Sequence Viewer
	XP_038343447	(Get FASTA)	NCBI Sequence Viewer
	XP_038343448	(Get FASTA)	NCBI Sequence Viewer
	XP_038405378	(Get FASTA)	NCBI Sequence Viewer
	XP_038405379	(Get FASTA)	NCBI Sequence Viewer
	XP_038405380	(Get FASTA)	NCBI Sequence Viewer
	XP_038469308	(Get FASTA)	NCBI Sequence Viewer
	XP_038469309	(Get FASTA)	NCBI Sequence Viewer
	XP_038469310	(Get FASTA)	NCBI Sequence Viewer
	XP_038534613	(Get FASTA)	NCBI Sequence Viewer
	XP_038534614	(Get FASTA)	NCBI Sequence Viewer
	XP_038534615	(Get FASTA)	NCBI Sequence Viewer
	XP_852231	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000074238.1
	ENSCAFP00030007131.1
	ENSCAFP00040003429.1
	ENSCAFP00845018521
	ENSCAFP00845018521.1

RefSeq Acc Id:

XP_852231 ⟸ XM_847138

- UniProtKB:

A0A8C0MBY4 (UniProtKB/TrEMBL), A0A8I3NFA9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTTLDDKLLGEKLQYYYSSSEDEDSDHEDKDGGRGALAGTSMPADAELAGEGISVNTGPKGVIN
DWRRFKQLETEQREEQCQEMERLVKKLSMTCRSHLDEEEDQHRQKDLQEKISGKMTLKEFAVMN
EDQDDEEFLQKYRKQRMEEMRQQLHKGPQFKKVFEIPSGEGFLDMIDKEQKSTLIMVHIYEDGI
PGTEAMNGCMICLAAEYPAVKFCRVKSSVIGASSRFTRNALPALLIYKGGELIGNFVRVTDQLG
EDFFAVDLEAFLQEFGLLPEKEVLVLTSVRNSATCHSEDSDLEID

hide sequence

RefSeq Acc Id:

XP_005625457 ⟸ XM_005625400

- UniProtKB:

A0A8C0MBY4 (UniProtKB/TrEMBL), A0A8I3NFA9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTTLDDKLLGEKLQYYYSSSEDEDSDHEDKDGGRGALAGTSMPADAELAGEGISVNTGPKGVIN
DWRRFKQLETEQREEQCQEMERLVKKLSMTCRSHLDEEEDQHRQKDLQEKISGKMTLKEFAVMN
EDQDDEEFLQKYRKQRMEEMRQQLHKGPQFKKVFEIPSGEGFLDMIDKEQKSTLIMVHIYEDGI
PGTEAMNGCMICLAAEYPAVKFCRVKSSVIGASSRFTRNALPALLIYKGGELIGNFVRVTDQLG
EDFFAVDLEAFLQEFGLLPEKEVLVLTSVRNSATCHSEDSDLEID

hide sequence

RefSeq Acc Id:

XP_022279584 ⟸ XM_022423876

- UniProtKB:

A0A8C0MBY4 (UniProtKB/TrEMBL), A0A8I3NFA9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTTLDDKLLGEKLQYYYSSSEDEDSDHEDKDGGRGALAGTSMPADAELAGEGISVNTGPKGVIN
DWRRFKQLETEQREEQCQEMERLVKKLSMTCRSHLDEEEDQHRQKDLQEKISGKMTLKEFAVMN
EDQDDEEFLQKYRKQRMEEMRQQLHKGPQFKKVFEIPSGEGFLDMIDKEQKSTLIMVHIYEDGI
PGTEAMNGCMICLAAEYPAVKFCRVKSSVIGASSRFTRNALPALLIYKGGELIGNFVRVTDQLG
EDFFAVDLEAFLQEFGLLPEKEVLVLTSVRNSATCHSEDSDLEID

hide sequence

RefSeq Acc Id:

ENSCAFP00000037914 ⟸ ENSCAFT00000046600

RefSeq Acc Id:

XP_038343447 ⟸ XM_038487519

RefSeq Acc Id:

XP_038343446 ⟸ XM_038487518

RefSeq Acc Id:

XP_038343448 ⟸ XM_038487520

RefSeq Acc Id:

XP_038469309 ⟸ XM_038613381

RefSeq Acc Id:

XP_038469308 ⟸ XM_038613380

RefSeq Acc Id:

XP_038469310 ⟸ XM_038613382

RefSeq Acc Id:	XP_038534614 ⟸ XM_038678686
- UniProtKB:	A0A8C0MBY4 (UniProtKB/TrEMBL), A0A8I3NFA9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038534613 ⟸ XM_038678685
- UniProtKB:	A0A8C0MBY4 (UniProtKB/TrEMBL), A0A8I3NFA9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038534615 ⟸ XM_038678687
- UniProtKB:	A0A8C0MBY4 (UniProtKB/TrEMBL), A0A8I3NFA9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038405379 ⟸ XM_038549451
- UniProtKB:	A0A8C0MBY4 (UniProtKB/TrEMBL), A0A8I3NFA9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038405378 ⟸ XM_038549450
- UniProtKB:	A0A8C0MBY4 (UniProtKB/TrEMBL), A0A8I3NFA9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038405380 ⟸ XM_038549452
- UniProtKB:	A0A8C0MBY4 (UniProtKB/TrEMBL), A0A8I3NFA9 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845018521 ⟸ ENSCAFT00845023597

Protein Domains

Phosducin thioredoxin-like

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000030566	Ensembl
	ENSCAFG00000056612	UniProtKB/TrEMBL
	ENSCAFG00030004412	UniProtKB/TrEMBL
	ENSCAFG00040002106	UniProtKB/TrEMBL
	ENSCAFG00845013251	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000104876.1	UniProtKB/TrEMBL
	ENSCAFT00030008119.1	UniProtKB/TrEMBL
	ENSCAFT00040003997.1	UniProtKB/TrEMBL
	ENSCAFT00845023597	ENTREZGENE
	ENSCAFT00845023597.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.168.10	UniProtKB/TrEMBL
	Glutaredoxin	UniProtKB/TrEMBL
InterPro	Phosducin	UniProtKB/TrEMBL
	Phosducin_N_dom_sf	UniProtKB/TrEMBL
	Phosducin_thioredoxin-like_dom	UniProtKB/TrEMBL
	Thioredoxin-like_sf	UniProtKB/TrEMBL
KEGG Report	cfa:609801	UniProtKB/TrEMBL
NCBI Gene	PDCL	ENTREZGENE
PANTHER	PHOSDUCIN-LIKE PROTEIN	UniProtKB/TrEMBL
	PHOSDUCIN-LIKE PROTEIN	UniProtKB/TrEMBL
Pfam	Phosducin	UniProtKB/TrEMBL
PRINTS	PHOSDUCIN	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52833	UniProtKB/TrEMBL
UniProt	A0A8C0MBY4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3NFA9	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:44342	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar