FOSL1 (FOS like 1, AP-1 transcription factor subunit) - Rat Genome Database

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Gene: FOSL1 (FOS like 1, AP-1 transcription factor subunit) Canis lupus familiaris
Analyze
Symbol: FOSL1
Name: FOS like 1, AP-1 transcription factor subunit
RGD ID: 12319399
Description: ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN cellular response to extracellular stimulus (ortholog); cytokine-mediated signaling pathway (ortholog); female pregnancy (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); autosomal recessive cutis laxa type IB (ortholog); Bardet-Biedl syndrome (ortholog); FOUND IN presynaptic membrane (ortholog); RNA polymerase II transcription regulator complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: fos-related antigen 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11851,366,719 - 51,374,411 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1851,368,352 - 51,373,748 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1849,975,212 - 49,982,921 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01852,404,801 - 52,412,502 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1852,405,480 - 52,411,838 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11851,504,866 - 51,512,571 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01851,079,242 - 51,086,930 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01851,868,548 - 51,876,244 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:28604746   PMID:30032202  


Genomics

Comparative Map Data
FOSL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11851,366,719 - 51,374,411 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1851,368,352 - 51,373,748 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1849,975,212 - 49,982,921 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01852,404,801 - 52,412,502 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1852,405,480 - 52,411,838 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11851,504,866 - 51,512,571 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01851,079,242 - 51,086,930 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01851,868,548 - 51,876,244 (+)NCBIUU_Cfam_GSD_1.0
FOSL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381165,892,049 - 65,900,545 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1165,892,049 - 65,900,573 (-)EnsemblGRCh38hg38GRCh38
GRCh371165,659,520 - 65,668,016 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361165,416,268 - 65,424,573 (-)NCBINCBI36Build 36hg18NCBI36
Build 341165,416,267 - 65,424,573NCBI
Celera1162,983,599 - 62,991,910 (-)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1161,986,283 - 61,994,593 (-)NCBIHuRef
CHM1_11165,544,106 - 65,552,418 (-)NCBICHM1_1
T2T-CHM13v2.01165,885,111 - 65,893,612 (-)NCBIT2T-CHM13v2.0
Fosl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39195,497,726 - 5,505,966 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl195,497,575 - 5,505,974 (+)EnsemblGRCm39 Ensembl
GRCm38195,447,698 - 5,455,938 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl195,447,547 - 5,455,946 (+)EnsemblGRCm38mm10GRCm38
MGSCv37195,447,698 - 5,455,938 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36195,447,698 - 5,455,938 (+)NCBIMGSCv36mm8
Celera195,319,672 - 5,327,911 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.33NCBI
Fosl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81212,183,885 - 212,192,391 (+)NCBIGRCr8
mRatBN7.21202,754,549 - 202,763,057 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1202,754,529 - 202,764,930 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1211,106,898 - 211,115,363 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01218,199,949 - 218,208,463 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01210,890,991 - 210,899,504 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01220,826,560 - 220,835,066 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1220,826,560 - 220,835,066 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01227,755,887 - 227,764,393 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41208,090,612 - 208,099,118 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11208,244,064 - 208,252,571 (+)NCBI
Celera1200,290,637 - 200,299,144 (+)NCBICelera
Cytogenetic Map1q43NCBI
Fosl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542219,423,591 - 19,433,885 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542219,425,741 - 19,431,801 (+)NCBIChiLan1.0ChiLan1.0
FOSL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2967,120,758 - 67,129,158 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11168,163,562 - 68,172,119 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01161,252,513 - 61,261,032 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11164,581,841 - 64,589,300 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1164,581,841 - 64,589,304 (-)Ensemblpanpan1.1panPan2
Fosl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049477,199,963 - 7,206,564 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365993,642,504 - 3,648,417 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365993,642,504 - 3,649,294 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FOSL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl26,430,153 - 6,436,173 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.126,430,158 - 6,436,173 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.225,534,085 - 5,540,201 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FOSL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.118,356,263 - 8,365,606 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl18,356,836 - 8,364,918 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038105,645,101 - 105,654,787 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fosl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476720,519,313 - 20,524,554 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476720,519,054 - 20,525,311 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FOSL1
85 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium
Low 6 3 6 8 8 4 2
Below cutoff 5 5 15 5 3 5 6 4 6 4

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_022405633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022405634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038424938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038424939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038501177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038501178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038563878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038563879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038628004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038628005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_540845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000020852   ⟹   ENSCAFP00000019360
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1851,368,352 - 51,373,748 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000088106   ⟹   ENSCAFP00000055689
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1851,368,352 - 51,373,748 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000089745   ⟹   ENSCAFP00000066557
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1851,368,352 - 51,373,748 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845030824   ⟹   ENSCAFP00845024164
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1852,405,480 - 52,411,838 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845030874   ⟹   ENSCAFP00845024201
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1852,405,480 - 52,411,838 (+)Ensembl
RefSeq Acc Id: XM_022405633   ⟹   XP_022261341
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11851,366,719 - 51,374,411 (+)NCBI
Dog10K_Boxer_Tasha1849,975,212 - 49,982,921 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038424938   ⟹   XP_038280866
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01852,404,801 - 52,412,502 (+)NCBI
RefSeq Acc Id: XM_038424939   ⟹   XP_038280867
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01852,404,801 - 52,412,502 (+)NCBI
RefSeq Acc Id: XM_038501177   ⟹   XP_038357105
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11851,504,866 - 51,512,571 (+)NCBI
RefSeq Acc Id: XM_038501178   ⟹   XP_038357106
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11851,504,866 - 51,512,571 (+)NCBI
RefSeq Acc Id: XM_038563878   ⟹   XP_038419806
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01851,868,548 - 51,876,244 (+)NCBI
RefSeq Acc Id: XM_038563879   ⟹   XP_038419807
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01851,868,548 - 51,876,244 (+)NCBI
RefSeq Acc Id: XM_038628004   ⟹   XP_038483932
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01851,079,242 - 51,086,930 (+)NCBI
RefSeq Acc Id: XM_038628005   ⟹   XP_038483933
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01851,079,242 - 51,086,930 (+)NCBI
RefSeq Acc Id: XM_540845   ⟹   XP_540845
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11851,366,719 - 51,374,411 (+)NCBI
Dog10K_Boxer_Tasha1849,975,212 - 49,982,921 (+)NCBI
Sequence:
RefSeq Acc Id: XP_540845   ⟸   XM_540845
- UniProtKB: A0A8C0YZ21 (UniProtKB/TrEMBL),   A0A8I3P2C8 (UniProtKB/TrEMBL),   A0A8C0KSF6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022261341   ⟸   XM_022405633
- UniProtKB: A0A8C0YZ21 (UniProtKB/TrEMBL),   A0A8I3P2C8 (UniProtKB/TrEMBL),   A0A8C0KSF6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000019360   ⟸   ENSCAFT00000020852
RefSeq Acc Id: ENSCAFP00000055689   ⟸   ENSCAFT00000088106
RefSeq Acc Id: ENSCAFP00000066557   ⟸   ENSCAFT00000089745
RefSeq Acc Id: XP_038357105   ⟸   XM_038501177
RefSeq Acc Id: XP_038357106   ⟸   XM_038501178
RefSeq Acc Id: XP_038483932   ⟸   XM_038628004
RefSeq Acc Id: XP_038483933   ⟸   XM_038628005
RefSeq Acc Id: XP_038280866   ⟸   XM_038424938
- UniProtKB: A0A8C0YZ21 (UniProtKB/TrEMBL),   A0A8I3P2C8 (UniProtKB/TrEMBL),   A0A8C0KSF6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038280867   ⟸   XM_038424939
- UniProtKB: A0A8C0YZ21 (UniProtKB/TrEMBL),   A0A8I3P2C8 (UniProtKB/TrEMBL),   A0A8C0KSF6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038419806   ⟸   XM_038563878
- UniProtKB: A0A8C0KSF6 (UniProtKB/TrEMBL),   A0A8C0YZ21 (UniProtKB/TrEMBL),   A0A8I3P2C8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038419807   ⟸   XM_038563879
- UniProtKB: A0A8C0KSF6 (UniProtKB/TrEMBL),   A0A8C0YZ21 (UniProtKB/TrEMBL),   A0A8I3P2C8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845024201   ⟸   ENSCAFT00845030874
RefSeq Acc Id: ENSCAFP00845024164   ⟸   ENSCAFT00845030824
Protein Domains
bZIP

Promoters
RGD ID:13686596
Promoter ID:EPDNEW_C4663
Type:multiple initiation site
Name:FOSL1_1
Description:FOS like 1, AP-1 transcription factor subunit
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11851,368,305 - 51,368,365EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000013132 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030014892 UniProtKB/TrEMBL
  ENSCAFG00040015311 UniProtKB/TrEMBL
  ENSCAFG00845017398 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000020852.2 UniProtKB/TrEMBL
  ENSCAFT00000089745.2 UniProtKB/TrEMBL
  ENSCAFT00030027616.1 UniProtKB/TrEMBL
  ENSCAFT00030027673.1 UniProtKB/TrEMBL
  ENSCAFT00030027702.1 UniProtKB/TrEMBL
  ENSCAFT00040028292.1 UniProtKB/TrEMBL
  ENSCAFT00040028355.1 UniProtKB/TrEMBL
  ENSCAFT00040028390.1 UniProtKB/TrEMBL
  ENSCAFT00845030824 ENTREZGENE
  ENSCAFT00845030824.1 UniProtKB/TrEMBL
  ENSCAFT00845030874.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/TrEMBL
InterPro AP-1 UniProtKB/TrEMBL
  bZIP UniProtKB/TrEMBL
  bZIP_sf UniProtKB/TrEMBL
NCBI Gene FOSL1 ENTREZGENE
PANTHER PTHR23351 UniProtKB/TrEMBL
  PTHR23351:SF6 UniProtKB/TrEMBL
Pfam bZIP_1 UniProtKB/TrEMBL
PRINTS LEUZIPPRFOS UniProtKB/TrEMBL
PROSITE BZIP UniProtKB/TrEMBL
  BZIP_BASIC UniProtKB/TrEMBL
SMART BRLZ UniProtKB/TrEMBL
Superfamily-SCOP SSF57959 UniProtKB/TrEMBL
UniProt A0A8C0KSF6 ENTREZGENE
  A0A8C0NAL1_CANLF UniProtKB/TrEMBL
  A0A8C0NIQ2_CANLF UniProtKB/TrEMBL
  A0A8C0YZ21 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3P2C8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3S2M2_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:40942 ENTREZGENE