PHC2 (polyhomeotic homolog 2) - Rat Genome Database

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Gene: PHC2 (polyhomeotic homolog 2) Canis lupus familiaris
Analyze
Symbol: PHC2
Name: polyhomeotic homolog 2
RGD ID: 12319020
Description: ENCODES a protein that exhibits chromatin binding (inferred); DNA binding (inferred); histone binding (inferred); INVOLVED IN spermatogenesis (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); genetic disease (ortholog); FOUND IN heterochromatin (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: polyhomeotic-like protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1267,993,587 - 68,115,307 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl267,993,366 - 68,115,324 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha264,571,172 - 64,693,473 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0268,554,343 - 68,677,404 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl268,554,359 - 68,677,400 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1265,366,474 - 65,490,177 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0266,389,728 - 66,512,720 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0267,381,540 - 67,504,721 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PHC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1267,993,587 - 68,115,307 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl267,993,366 - 68,115,324 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha264,571,172 - 64,693,473 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0268,554,343 - 68,677,404 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl268,554,359 - 68,677,400 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1265,366,474 - 65,490,177 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0266,389,728 - 66,512,720 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0267,381,540 - 67,504,721 (+)NCBIUU_Cfam_GSD_1.0
PHC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38133,323,626 - 33,431,095 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl133,323,623 - 33,431,095 (-)EnsemblGRCh38hg38GRCh38
GRCh37133,789,227 - 33,896,696 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36133,561,811 - 33,613,781 (-)NCBINCBI36Build 36hg18NCBI36
Build 34133,458,319 - 33,510,287NCBI
Celera132,060,914 - 32,112,987 (-)NCBICelera
Cytogenetic Map1p35.1NCBI
HuRef131,905,459 - 31,957,330 (-)NCBIHuRef
CHM1_1133,904,604 - 33,956,563 (-)NCBICHM1_1
T2T-CHM13v2.0133,185,234 - 33,292,697 (-)NCBIT2T-CHM13v2.0
Phc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394128,548,448 - 128,646,674 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4128,548,495 - 128,646,674 (+)EnsemblGRCm39 Ensembl
GRCm384128,654,655 - 128,752,881 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4128,654,702 - 128,752,881 (+)EnsemblGRCm38mm10GRCm38
MGSCv374128,382,240 - 128,430,118 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364128,207,300 - 128,255,178 (+)NCBIMGSCv36mm8
Celera4127,043,568 - 127,091,635 (+)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map462.12NCBI
Phc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85146,285,000 - 146,383,664 (+)NCBIGRCr8
mRatBN7.25141,000,604 - 141,099,268 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5141,050,842 - 141,099,268 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5143,746,693 - 143,795,043 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05145,516,522 - 145,564,872 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05145,517,431 - 145,565,795 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05146,832,552 - 146,931,444 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5146,882,756 - 146,931,444 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05150,570,311 - 150,668,954 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45147,930,703 - 147,978,856 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15147,924,729 - 147,988,894 (+)NCBI
Celera5139,535,101 - 139,583,492 (+)NCBICelera
Cytogenetic Map5q36NCBI
Phc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545211,491,573 - 11,538,618 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545211,490,336 - 11,538,618 (-)NCBIChiLan1.0ChiLan1.0
PHC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21193,395,679 - 193,503,266 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11192,517,821 - 192,625,405 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0132,609,560 - 32,717,143 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1133,794,951 - 33,901,741 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl133,794,950 - 33,846,913 (-)Ensemblpanpan1.1panPan2
Phc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505850,322,918 - 50,427,312 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647416,145,496 - 16,236,854 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647416,147,699 - 16,252,073 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PHC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl689,574,035 - 89,685,272 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1689,574,030 - 89,685,275 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2683,623,713 - 83,647,255 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PHC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12099,447,099 - 99,558,783 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2099,507,489 - 99,557,540 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603317,134,794 - 17,246,546 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Phc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476416,351,954 - 16,456,119 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476416,353,193 - 16,456,115 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PHC2
1230 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 8 10 6
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003433835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005617604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005617605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005617606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005617607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022411719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038461570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038461584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038470307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038470308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038470309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038470310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038470311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038470312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038470313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038470314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038531149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038531150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038531151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038531152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038531153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038531154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038531155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038531156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038595368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038595369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038595370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038595371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038595372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038595373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038595374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038595375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038659452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038659453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038659454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038659455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038659456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038659457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038659458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038659459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000016458   ⟹   ENSCAFP00000015226
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl267,993,366 - 68,115,324 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000047049   ⟹   ENSCAFP00000041972
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl267,993,366 - 68,115,324 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000086610   ⟹   ENSCAFP00000063738
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl268,087,978 - 68,115,324 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000093827   ⟹   ENSCAFP00000045674
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl267,993,366 - 68,115,324 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845008971   ⟹   ENSCAFP00845007072
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl268,554,359 - 68,677,400 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845008979   ⟹   ENSCAFP00845007080
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl268,554,359 - 68,677,400 (+)Ensembl
RefSeq Acc Id: XM_003433835   ⟹   XP_003433883
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1267,993,593 - 68,115,307 (+)NCBI
Dog10K_Boxer_Tasha264,571,737 - 64,693,473 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005617604   ⟹   XP_005617661
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1267,993,593 - 68,115,307 (+)NCBI
Dog10K_Boxer_Tasha264,571,736 - 64,693,473 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005617605   ⟹   XP_005617662
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1267,993,594 - 68,115,307 (+)NCBI
Dog10K_Boxer_Tasha264,571,737 - 64,693,473 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005617606   ⟹   XP_005617663
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1268,087,984 - 68,115,307 (+)NCBI
Dog10K_Boxer_Tasha264,666,081 - 64,693,473 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005617607   ⟹   XP_005617664
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1268,099,133 - 68,115,307 (+)NCBI
Dog10K_Boxer_Tasha264,677,299 - 64,693,473 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022411719   ⟹   XP_022267427
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1267,993,587 - 68,112,937 (+)NCBI
Dog10K_Boxer_Tasha264,571,732 - 64,691,103 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038461570   ⟹   XP_038317498
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha264,571,172 - 64,693,473 (+)NCBI
RefSeq Acc Id: XM_038461584   ⟹   XP_038317512
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha264,666,812 - 64,693,473 (+)NCBI
RefSeq Acc Id: XM_038470307   ⟹   XP_038326235
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1265,367,041 - 65,490,177 (+)NCBI
RefSeq Acc Id: XM_038470308   ⟹   XP_038326236
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1265,366,474 - 65,490,177 (+)NCBI
RefSeq Acc Id: XM_038470309   ⟹   XP_038326237
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1265,367,037 - 65,487,809 (+)NCBI
RefSeq Acc Id: XM_038470310   ⟹   XP_038326238
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1265,367,042 - 65,490,177 (+)NCBI
RefSeq Acc Id: XM_038470311   ⟹   XP_038326239
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1265,367,042 - 65,490,177 (+)NCBI
RefSeq Acc Id: XM_038470312   ⟹   XP_038326240
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1265,462,293 - 65,490,175 (+)NCBI
RefSeq Acc Id: XM_038470313   ⟹   XP_038326241
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1265,473,322 - 65,490,175 (+)NCBI
RefSeq Acc Id: XM_038470314   ⟹   XP_038326242
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1265,463,024 - 65,490,175 (+)NCBI
RefSeq Acc Id: XM_038531149   ⟹   XP_038387077
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0267,382,104 - 67,504,721 (+)NCBI
RefSeq Acc Id: XM_038531150   ⟹   XP_038387078
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0267,381,540 - 67,504,721 (+)NCBI
RefSeq Acc Id: XM_038531151   ⟹   XP_038387079
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0267,382,100 - 67,502,351 (+)NCBI
RefSeq Acc Id: XM_038531152   ⟹   XP_038387080
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0267,382,105 - 67,504,721 (+)NCBI
RefSeq Acc Id: XM_038531153   ⟹   XP_038387081
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0267,382,105 - 67,504,721 (+)NCBI
RefSeq Acc Id: XM_038531154   ⟹   XP_038387082
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0267,476,799 - 67,504,721 (+)NCBI
RefSeq Acc Id: XM_038531155   ⟹   XP_038387083
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0267,487,828 - 67,504,721 (+)NCBI
RefSeq Acc Id: XM_038531156   ⟹   XP_038387084
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0267,477,530 - 67,504,721 (+)NCBI
RefSeq Acc Id: XM_038595368   ⟹   XP_038451296
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0266,390,292 - 66,512,720 (+)NCBI
RefSeq Acc Id: XM_038595369   ⟹   XP_038451297
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0266,389,728 - 66,512,720 (+)NCBI
RefSeq Acc Id: XM_038595370   ⟹   XP_038451298
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0266,390,288 - 66,510,355 (+)NCBI
RefSeq Acc Id: XM_038595371   ⟹   XP_038451299
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0266,390,293 - 66,512,720 (+)NCBI
RefSeq Acc Id: XM_038595372   ⟹   XP_038451300
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0266,390,293 - 66,512,720 (+)NCBI
RefSeq Acc Id: XM_038595373   ⟹   XP_038451301
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0266,484,604 - 66,512,719 (+)NCBI
RefSeq Acc Id: XM_038595374   ⟹   XP_038451302
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0266,495,825 - 66,512,719 (+)NCBI
RefSeq Acc Id: XM_038595375   ⟹   XP_038451303
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0266,485,336 - 66,512,719 (+)NCBI
RefSeq Acc Id: XM_038659452   ⟹   XP_038515380
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0268,554,907 - 68,677,404 (+)NCBI
RefSeq Acc Id: XM_038659453   ⟹   XP_038515381
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0268,554,343 - 68,677,404 (+)NCBI
RefSeq Acc Id: XM_038659454   ⟹   XP_038515382
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0268,554,903 - 68,675,041 (+)NCBI
RefSeq Acc Id: XM_038659455   ⟹   XP_038515383
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0268,554,908 - 68,677,404 (+)NCBI
RefSeq Acc Id: XM_038659456   ⟹   XP_038515384
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0268,554,908 - 68,677,404 (+)NCBI
RefSeq Acc Id: XM_038659457   ⟹   XP_038515385
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0268,649,491 - 68,677,402 (+)NCBI
RefSeq Acc Id: XM_038659458   ⟹   XP_038515386
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0268,660,515 - 68,677,402 (+)NCBI
RefSeq Acc Id: XM_038659459   ⟹   XP_038515387
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0268,650,222 - 68,677,402 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003433883 (Get FASTA)   NCBI Sequence Viewer  
  XP_005617661 (Get FASTA)   NCBI Sequence Viewer  
  XP_005617662 (Get FASTA)   NCBI Sequence Viewer  
  XP_005617663 (Get FASTA)   NCBI Sequence Viewer  
  XP_005617664 (Get FASTA)   NCBI Sequence Viewer  
  XP_022267427 (Get FASTA)   NCBI Sequence Viewer  
  XP_038317498 (Get FASTA)   NCBI Sequence Viewer  
  XP_038317512 (Get FASTA)   NCBI Sequence Viewer  
  XP_038326235 (Get FASTA)   NCBI Sequence Viewer  
  XP_038326236 (Get FASTA)   NCBI Sequence Viewer  
  XP_038326237 (Get FASTA)   NCBI Sequence Viewer  
  XP_038326238 (Get FASTA)   NCBI Sequence Viewer  
  XP_038326239 (Get FASTA)   NCBI Sequence Viewer  
  XP_038326240 (Get FASTA)   NCBI Sequence Viewer  
  XP_038326241 (Get FASTA)   NCBI Sequence Viewer  
  XP_038326242 (Get FASTA)   NCBI Sequence Viewer  
  XP_038387077 (Get FASTA)   NCBI Sequence Viewer  
  XP_038387078 (Get FASTA)   NCBI Sequence Viewer  
  XP_038387079 (Get FASTA)   NCBI Sequence Viewer  
  XP_038387080 (Get FASTA)   NCBI Sequence Viewer  
  XP_038387081 (Get FASTA)   NCBI Sequence Viewer  
  XP_038387082 (Get FASTA)   NCBI Sequence Viewer  
  XP_038387083 (Get FASTA)   NCBI Sequence Viewer  
  XP_038387084 (Get FASTA)   NCBI Sequence Viewer  
  XP_038451296 (Get FASTA)   NCBI Sequence Viewer  
  XP_038451297 (Get FASTA)   NCBI Sequence Viewer  
  XP_038451298 (Get FASTA)   NCBI Sequence Viewer  
  XP_038451299 (Get FASTA)   NCBI Sequence Viewer  
  XP_038451300 (Get FASTA)   NCBI Sequence Viewer  
  XP_038451301 (Get FASTA)   NCBI Sequence Viewer  
  XP_038451302 (Get FASTA)   NCBI Sequence Viewer  
  XP_038451303 (Get FASTA)   NCBI Sequence Viewer  
  XP_038515380 (Get FASTA)   NCBI Sequence Viewer  
  XP_038515381 (Get FASTA)   NCBI Sequence Viewer  
  XP_038515382 (Get FASTA)   NCBI Sequence Viewer  
  XP_038515383 (Get FASTA)   NCBI Sequence Viewer  
  XP_038515384 (Get FASTA)   NCBI Sequence Viewer  
  XP_038515385 (Get FASTA)   NCBI Sequence Viewer  
  XP_038515386 (Get FASTA)   NCBI Sequence Viewer  
  XP_038515387 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000015226.4
  ENSCAFP00000041972.1
  ENSCAFP00030023029.1
  ENSCAFP00030023127.1
  ENSCAFP00030023218.1
  ENSCAFP00040031231.1
  ENSCAFP00040031320.1
  ENSCAFP00040031388.1
  ENSCAFP00845007072
  ENSCAFP00845007072.1
  ENSCAFP00845007080
  ENSCAFP00845007080.1
Reference Protein Sequences
RefSeq Acc Id: XP_005617661   ⟸   XM_005617604
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LL79 (UniProtKB/TrEMBL),   A0A8C0LHP7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003433883   ⟸   XM_003433835
- Peptide Label: isoform X3
- UniProtKB: A0A8C0NB60 (UniProtKB/TrEMBL),   A0A8P0NSR1 (UniProtKB/TrEMBL),   A0A8C0LHP7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005617662   ⟸   XM_005617605
- Peptide Label: isoform X4
- UniProtKB: A0A8C0LM68 (UniProtKB/TrEMBL),   A0A8C0RK23 (UniProtKB/TrEMBL),   A0A8P0NCC5 (UniProtKB/TrEMBL),   A0A8C0LHP7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005617663   ⟸   XM_005617606
- Peptide Label: isoform X5
- UniProtKB: A0A8C0Z2B6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005617664   ⟸   XM_005617607
- Peptide Label: isoform X5
- UniProtKB: A0A8C0Z2B6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022267427   ⟸   XM_022411719
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LHP7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000045674   ⟸   ENSCAFT00000093827
RefSeq Acc Id: ENSCAFP00000063738   ⟸   ENSCAFT00000086610
RefSeq Acc Id: ENSCAFP00000041972   ⟸   ENSCAFT00000047049
RefSeq Acc Id: ENSCAFP00000015226   ⟸   ENSCAFT00000016458
RefSeq Acc Id: XP_038326236   ⟸   XM_038470308
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038326237   ⟸   XM_038470309
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038326235   ⟸   XM_038470307
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038326238   ⟸   XM_038470310
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038326239   ⟸   XM_038470311
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038326240   ⟸   XM_038470312
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038326242   ⟸   XM_038470314
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038326241   ⟸   XM_038470313
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038451297   ⟸   XM_038595369
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038451298   ⟸   XM_038595370
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038451296   ⟸   XM_038595368
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038451299   ⟸   XM_038595371
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038451300   ⟸   XM_038595372
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038451301   ⟸   XM_038595373
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038451303   ⟸   XM_038595375
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038451302   ⟸   XM_038595374
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038515381   ⟸   XM_038659453
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LHP7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038515382   ⟸   XM_038659454
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LHP7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038515380   ⟸   XM_038659452
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LHP7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038515383   ⟸   XM_038659455
- Peptide Label: isoform X3
- UniProtKB: A0A8C0T6U6 (UniProtKB/TrEMBL),   A0A8I3MYF1 (UniProtKB/TrEMBL),   A0A8C0LHP7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038515384   ⟸   XM_038659456
- Peptide Label: isoform X4
- UniProtKB: A0A8C0T989 (UniProtKB/TrEMBL),   A0A8I3MWG1 (UniProtKB/TrEMBL),   A0A8C0LHP7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038515385   ⟸   XM_038659457
- Peptide Label: isoform X5
- UniProtKB: A0A8C0Z2B6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038515387   ⟸   XM_038659459
- Peptide Label: isoform X5
- UniProtKB: A0A8C0Z2B6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038515386   ⟸   XM_038659458
- Peptide Label: isoform X5
- UniProtKB: A0A8C0Z2B6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038317498   ⟸   XM_038461570
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LL79 (UniProtKB/TrEMBL),   A0A8C0LHP7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038317512   ⟸   XM_038461584
- Peptide Label: isoform X5
- UniProtKB: A0A8C0Z2B6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038387078   ⟸   XM_038531150
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LHP7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038387079   ⟸   XM_038531151
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LHP7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038387077   ⟸   XM_038531149
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LHP7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038387080   ⟸   XM_038531152
- Peptide Label: isoform X3
- UniProtKB: A0A8C0LHP7 (UniProtKB/TrEMBL),   A0A8C0T6U6 (UniProtKB/TrEMBL),   A0A8I3MYF1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038387081   ⟸   XM_038531153
- Peptide Label: isoform X4
- UniProtKB: A0A8C0LHP7 (UniProtKB/TrEMBL),   A0A8C0T989 (UniProtKB/TrEMBL),   A0A8I3MWG1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038387082   ⟸   XM_038531154
- Peptide Label: isoform X5
- UniProtKB: A0A8C0Z2B6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038387084   ⟸   XM_038531156
- Peptide Label: isoform X5
- UniProtKB: A0A8C0Z2B6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038387083   ⟸   XM_038531155
- Peptide Label: isoform X5
- UniProtKB: A0A8C0Z2B6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845007072   ⟸   ENSCAFT00845008971
RefSeq Acc Id: ENSCAFP00845007080   ⟸   ENSCAFT00845008979
Protein Domains
FCS-type   SAM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000010340 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030014197 UniProtKB/TrEMBL
  ENSCAFG00040019346 UniProtKB/TrEMBL
  ENSCAFG00845005005 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000016458.6 UniProtKB/TrEMBL
  ENSCAFT00000047049.4 UniProtKB/TrEMBL
  ENSCAFT00030026377.1 UniProtKB/TrEMBL
  ENSCAFT00030026494.1 UniProtKB/TrEMBL
  ENSCAFT00030026598.1 UniProtKB/TrEMBL
  ENSCAFT00040035852.1 UniProtKB/TrEMBL
  ENSCAFT00040035950.1 UniProtKB/TrEMBL
  ENSCAFT00040036038.1 UniProtKB/TrEMBL
  ENSCAFT00845008971 ENTREZGENE
  ENSCAFT00845008971.1 UniProtKB/TrEMBL
  ENSCAFT00845008979 ENTREZGENE
  ENSCAFT00845008979.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
  3.30.60.160 UniProtKB/TrEMBL
InterPro SAM UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/TrEMBL
  Znf_FCS UniProtKB/TrEMBL
  Znf_FCS_sf UniProtKB/TrEMBL
KEGG Report cfa:487297 UniProtKB/TrEMBL
NCBI Gene PHC2 ENTREZGENE
PANTHER POLYCOMB GROUP PROTEIN UniProtKB/TrEMBL
  POLYHOMEOTIC-LIKE PROTEIN 2 UniProtKB/TrEMBL
Pfam PHC2_SAM_assoc UniProtKB/TrEMBL
  SAM_1 UniProtKB/TrEMBL
  zf-FCS_1 UniProtKB/TrEMBL
PROSITE SAM_DOMAIN UniProtKB/TrEMBL
  ZF_FCS UniProtKB/TrEMBL
SMART SAM UniProtKB/TrEMBL
Superfamily-SCOP SSF47769 UniProtKB/TrEMBL
UniProt A0A8C0LHP7 ENTREZGENE
  A0A8C0LL79 ENTREZGENE
  A0A8C0LM68 ENTREZGENE
  A0A8C0NB60 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0RK23 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0T6U6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0T989 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0Z2B6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MWG1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MYF1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NCC5 ENTREZGENE
  A0A8P0NSR1 ENTREZGENE
UniProt Secondary A0A8P0NCC5 UniProtKB/TrEMBL
  A0A8P0NSR1 UniProtKB/TrEMBL
VGNC ID VGNC:44478 ENTREZGENE