C9H17orf75 (chromosome 9 C17orf75 homolog) - Rat Genome Database

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Gene: C9H17orf75 (chromosome 9 C17orf75 homolog) Canis lupus familiaris
Analyze
Symbol: C9H17orf75 (Ensembl: C17orf75)
Name: chromosome 9 C17orf75 homolog (Ensembl:chromosome 17 open reading frame 75)
RGD ID: 12318303
Description: INVOLVED IN intracellular protein transport (inferred); vesicle tethering to Golgi (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasmic vesicle (inferred); cytosol (inferred); Golgi apparatus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromosome 9 open reading frame, human C17orf75; protein Njmu-R1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1940,617,595 - 40,627,887 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl940,617,125 - 40,625,959 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha939,776,537 - 39,786,837 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0941,434,052 - 41,444,591 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl941,433,587 - 41,444,587 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1940,219,897 - 40,230,197 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0940,514,053 - 40,524,310 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0940,588,856 - 40,599,156 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
C9H17orf75
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1940,617,595 - 40,627,887 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl940,617,125 - 40,625,959 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha939,776,537 - 39,786,837 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0941,434,052 - 41,444,591 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl941,433,587 - 41,444,587 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1940,219,897 - 40,230,197 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0940,514,053 - 40,524,310 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0940,588,856 - 40,599,156 (+)NCBIUU_Cfam_GSD_1.0
C17orf75
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381732,328,441 - 32,350,014 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1732,324,565 - 32,350,023 (-)EnsemblGRCh38hg38GRCh38
GRCh371730,655,460 - 30,669,192 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361727,682,494 - 27,693,302 (-)NCBINCBI36Build 36hg18NCBI36
Celera1727,568,590 - 27,579,396 (-)NCBICelera
Cytogenetic Map17q11.2NCBI
HuRef1726,842,243 - 26,855,990 (-)NCBIHuRef
CHM1_11730,717,952 - 30,731,720 (-)NCBICHM1_1
T2T-CHM13v2.01733,274,212 - 33,295,818 (-)NCBIT2T-CHM13v2.0
5730455P16Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391180,251,318 - 80,268,860 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1180,251,319 - 80,268,860 (-)EnsemblGRCm39 Ensembl
GRCm381180,360,492 - 80,378,048 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1180,360,492 - 80,378,034 (-)EnsemblGRCm38mm10GRCm38
MGSCv371180,173,994 - 80,191,517 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361180,176,683 - 80,194,229 (-)NCBIMGSCv36mm8
Celera1189,997,863 - 90,015,386 (-)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1147.8NCBI
C10h17orf75
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81065,855,926 - 65,871,711 (-)NCBIGRCr8
mRatBN7.21065,360,924 - 65,373,864 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1065,360,924 - 65,373,864 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1069,989,009 - 70,001,938 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01069,494,309 - 69,507,236 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01064,958,003 - 64,970,936 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01067,738,131 - 67,751,049 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1067,739,103 - 67,751,002 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01067,394,162 - 67,406,916 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41068,586,716 - 68,600,561 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11068,600,700 - 68,626,529 (-)NCBI
Celera1064,320,737 - 64,332,800 (-)NCBICelera
Cytogenetic Map10q26NCBI
LOC102024566
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554817,281,735 - 7,293,246 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554817,281,735 - 7,293,246 (-)NCBIChiLan1.0ChiLan1.0
C19H17orf75
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21932,106,937 - 32,125,582 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11733,986,751 - 34,008,571 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01724,425,895 - 24,447,731 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11724,714,701 - 24,732,604 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1724,721,876 - 24,732,435 (+)Ensemblpanpan1.1panPan2
CUNH17orf75
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560239,684,428 - 39,698,863 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365382,562,530 - 2,574,084 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365382,562,427 - 2,574,441 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C12H17orf75
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1242,611,777 - 42,625,289 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11242,611,934 - 42,625,300 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21244,372,023 - 44,385,434 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH17orf75
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11625,900,541 - 25,911,410 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1625,901,238 - 25,911,254 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660754,134,240 - 4,145,018 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH17orf75
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624875396,675 - 406,325 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624875395,962 - 405,901 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in C9H17orf75
63 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 2 11 1 4 12 8 10
Low 3 5 11 6 5 6 2 6 6
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000029249   ⟹   ENSCAFP00000027197
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl940,617,125 - 40,625,959 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000060395   ⟹   ENSCAFP00000059423
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl940,617,125 - 40,622,530 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845022393   ⟹   ENSCAFP00845017595
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl941,433,587 - 41,444,587 (+)Ensembl
RefSeq Acc Id: XM_038486326   ⟹   XP_038342254
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1940,219,897 - 40,230,197 (+)NCBI
RefSeq Acc Id: XM_038548154   ⟹   XP_038404082
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0940,588,856 - 40,599,156 (+)NCBI
RefSeq Acc Id: XM_038612119   ⟹   XP_038468047
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0940,514,053 - 40,524,310 (+)NCBI
RefSeq Acc Id: XM_038677372   ⟹   XP_038533300
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0941,434,052 - 41,444,591 (+)NCBI
RefSeq Acc Id: XM_848743   ⟹   XP_853836
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1940,617,595 - 40,627,887 (+)NCBI
Dog10K_Boxer_Tasha939,776,537 - 39,786,837 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_853836   ⟸   XM_848743
- Sequence:
RefSeq Acc Id: ENSCAFP00000027197   ⟸   ENSCAFT00000029249
RefSeq Acc Id: ENSCAFP00000059423   ⟸   ENSCAFT00000060395
RefSeq Acc Id: XP_038342254   ⟸   XM_038486326
RefSeq Acc Id: XP_038468047   ⟸   XM_038612119
RefSeq Acc Id: XP_038533300   ⟸   XM_038677372
RefSeq Acc Id: XP_038404082   ⟸   XM_038548154
RefSeq Acc Id: ENSCAFP00845017595   ⟸   ENSCAFT00845022393


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000018416 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030015498 UniProtKB/TrEMBL
  ENSCAFG00040012703 UniProtKB/TrEMBL
  ENSCAFG00845012586 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000029249.5 UniProtKB/TrEMBL
  ENSCAFT00030028571.1 UniProtKB/TrEMBL
  ENSCAFT00040023418.1 UniProtKB/TrEMBL
  ENSCAFT00845022393.1 UniProtKB/TrEMBL
InterPro Njmu-R1 UniProtKB/TrEMBL
NCBI Gene C9H17orf75 ENTREZGENE
PANTHER PROTEIN NJMU-R1 UniProtKB/TrEMBL
  PTHR14416 UniProtKB/TrEMBL
Pfam Njmu-R1 UniProtKB/TrEMBL
UniProt A0A8C0SEX9_CANLF UniProtKB/TrEMBL
  A0A8I3NPV1_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:51929 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-09-12 C9H17orf75  chromosome 9 C17orf75 homolog    chromosome 9 open reading frame, human C17orf75  Symbol and/or name change 5135510 APPROVED