CCR9 (C-C motif chemokine receptor 9) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: CCR9 (C-C motif chemokine receptor 9) Canis lupus familiaris
Analyze
Symbol: CCR9
Name: C-C motif chemokine receptor 9
RGD ID: 12317910
Description: INVOLVED IN CD8-positive, gamma-delta intraepithelial T cell differentiation (ortholog); chemotaxis (ortholog); ASSOCIATED WITH allergic disease (ortholog); asthma (ortholog); COVID-19 (ortholog); FOUND IN cell surface (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: C-C chemokine receptor type 9; chemokine C-C motif receptor 9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12042,607,024 - 42,616,823 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2042,607,024 - 42,616,823 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2042,522,841 - 42,532,627 (-)NCBI
ROS_Cfam_1.02043,089,954 - 43,100,368 (-)NCBI
UMICH_Zoey_3.12042,330,862 - 42,340,690 (-)NCBI
UNSW_CanFamBas_1.02042,738,503 - 42,748,344 (-)NCBI
UU_Cfam_GSD_1.02043,013,377 - 43,023,212 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22209203  


Genomics

Comparative Map Data
CCR9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12042,607,024 - 42,616,823 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2042,607,024 - 42,616,823 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2042,522,841 - 42,532,627 (-)NCBI
ROS_Cfam_1.02043,089,954 - 43,100,368 (-)NCBI
UMICH_Zoey_3.12042,330,862 - 42,340,690 (-)NCBI
UNSW_CanFamBas_1.02042,738,503 - 42,748,344 (-)NCBI
UU_Cfam_GSD_1.02043,013,377 - 43,023,212 (-)NCBI
CCR9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl345,886,509 - 45,903,174 (+)EnsemblGRCh38hg38GRCh38
GRCh38345,886,064 - 45,903,174 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37345,927,556 - 45,944,666 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36345,903,023 - 45,919,671 (+)NCBINCBI36hg18NCBI36
Build 34345,903,022 - 45,919,671NCBI
Celera345,865,603 - 45,882,297 (+)NCBI
Cytogenetic Map3p21.31NCBI
HuRef345,971,916 - 45,988,702 (+)NCBIHuRef
CHM1_1345,877,982 - 45,894,642 (+)NCBICHM1_1
Ccr9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399123,596,276 - 123,612,522 (+)NCBIGRCm39mm39
GRCm39 Ensembl9123,507,504 - 123,613,395 (+)Ensembl
GRCm389123,767,211 - 123,783,457 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9123,678,439 - 123,784,330 (+)EnsemblGRCm38mm10GRCm38
MGSCv379123,676,329 - 123,692,575 (+)NCBIGRCm37mm9NCBIm37
MGSCv369123,527,137 - 123,630,663 (+)NCBImm8
Celera9124,227,741 - 124,231,922 (+)NCBICelera
Cytogenetic Map9F4NCBI
cM Map974.33NCBI
Ccr9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28123,396,157 - 123,410,199 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl8123,395,813 - 123,413,969 (+)Ensembl
Rnor_6.08132,827,325 - 132,842,130 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8132,828,091 - 132,842,130 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08131,978,885 - 131,993,230 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48128,527,943 - 128,541,982 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18128,547,679 - 128,561,719 (+)NCBI
Celera8122,504,371 - 122,518,410 (+)NCBICelera
Cytogenetic Map8q32NCBI
Ccr9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542026,083,040 - 26,093,775 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542026,083,445 - 26,093,740 (-)NCBIChiLan1.0ChiLan1.0
CCR9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1346,900,845 - 46,917,443 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl346,900,845 - 46,917,443 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0345,719,655 - 45,810,964 (+)NCBIMhudiblu_PPA_v0panPan3
Ccr9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118197,703,423 - 197,704,532 (-)NCBI
SpeTri2.0NW_00493669555,788 - 59,251 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCR9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1329,033,570 - 29,054,598 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11329,033,609 - 29,051,227 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21332,130,027 - 32,147,645 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCR9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1227,354,139 - 7,375,280 (+)NCBI
ChlSab1.1 Ensembl227,354,489 - 7,377,676 (+)Ensembl
Vero_WHO_p1.0NW_023666041159,791,948 - 159,811,865 (-)NCBI
Ccr9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473074,989,725 - 74,991,400 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium
Low 2 6 4
Below cutoff 3 5 21 6 6 5 1 12 8 5 6

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000022020   ⟹   ENSCAFP00000020448
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2042,607,024 - 42,616,823 (-)Ensembl
RefSeq Acc Id: NM_001284476   ⟹   NP_001271405
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12042,607,024 - 42,616,823 (-)NCBI
Dog10K_Boxer_Tasha2042,522,841 - 42,532,627 (-)NCBI
ROS_Cfam_1.02043,089,954 - 43,100,368 (-)NCBI
UMICH_Zoey_3.12042,330,862 - 42,340,690 (-)NCBI
UNSW_CanFamBas_1.02042,738,503 - 42,748,344 (-)NCBI
UU_Cfam_GSD_1.02043,013,377 - 43,023,212 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001271405 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAL22341 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001271405   ⟸   NM_001284476
- UniProtKB: E2RQ21 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000020448   ⟸   ENSCAFT00000022020

Promoters
RGD ID:13686907
Promoter ID:EPDNEW_C4976
Type:initiation region
Name:CCR9_1
Description:Canis lupus familiaris C-C motif chemokine receptor 9 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12042,616,886 - 42,616,946EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000013879 Ensembl, ENTREZGENE
Ensembl Protein ENSCAFP00000020448 ENTREZGENE
Ensembl Transcript ENSCAFT00000022020 ENTREZGENE
NCBI Gene CCR9 ENTREZGENE
UniProt E2RQ21 ENTREZGENE
VGNC ID VGNC:38917 ENTREZGENE