C24H20orf202 (chromosome 24 C20orf202 homolog)

Gene: C24H20orf202 (chromosome 24 C20orf202 homolog) Canis lupus familiaris

Analyze

Symbol:

C24H20orf202 (Ensembl: C20orf202)

Name:

chromosome 24 C20orf202 homolog (Ensembl:chromosome 20 open reading frame 202)

RGD ID:

12314392

Description:

ASSOCIATED WITH genetic disease (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

chromosome 24 open reading frame, human C20orf202; uncharacterized protein C20orf202 homolog

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	19,781,931 - 19,787,929 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	19,783,748 - 19,788,401 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	19,437,603 - 19,455,359 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	20,473,886 - 20,478,952 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	20,473,753 - 20,492,395 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	19,751,628 - 19,756,692 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	19,856,987 - 19,862,037 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	20,288,008 - 20,293,057 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

Genomics

Comparative Map Data

C24H20orf202
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	19,781,931 - 19,787,929 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	19,783,748 - 19,788,401 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	19,437,603 - 19,455,359 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	20,473,886 - 20,478,952 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	20,473,753 - 20,492,395 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	19,751,628 - 19,756,692 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	19,856,987 - 19,862,037 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	20,288,008 - 20,293,057 (-)	NCBI		UU_Cfam_GSD_1.0

C20orf202
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	1,203,454 - 1,209,076 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	1,203,454 - 1,209,076 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	1,184,098 - 1,189,720 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	1,132,104 - 1,136,923 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	20	1,280,428 - 1,285,247 (+)	NCBI		Celera
Cytogenetic Map	20	p13	NCBI
HuRef	20	1,135,867 - 1,140,686 (+)	NCBI		HuRef
CHM1_1	20	1,184,116 - 1,188,936 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	20	1,250,656 - 1,256,277 (+)	NCBI		T2T-CHM13v2.0

Tmem74bos
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	151,521,281 - 151,528,053 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	151,521,281 - 151,528,259 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	151,679,361 - 151,686,133 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	151,679,361 - 151,686,339 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	151,505,622 - 151,527,370 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	151,370,802 - 151,377,780 (-)	NCBI		MGSCv36	mm8
Celera	2	157,497,035 - 157,503,244 (-)	NCBI		Celera
Cytogenetic Map	2	G3	NCBI
cM Map	2	74.83	NCBI

Tmem74bos
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	160,658,152 - 160,665,323 (-)	NCBI		GRCr8
mRatBN7.2	3	140,197,773 - 140,204,953 (-)	NCBI	mRatBN7.2	mRatBN7.2
UTH_Rnor_SHR_Utx	3	144,102,307 - 144,109,494 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	152,686,097 - 152,693,301 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	150,426,581 - 150,433,643 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	147,202,234 - 147,207,678 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	3	153,555,091 - 153,560,440 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	142,022,959 - 142,030,458 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	138,958,200 - 138,963,644 (-)	NCBI		Celera
Cytogenetic Map	3	q41	NCBI

LOC102017726
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955596	429,206 - 445,151 (+)	NCBI	ChiLan1.0	ChiLan1.0

LOC100986458
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	2,214,999 - 2,227,691 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	2,211,828 - 2,224,520 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	1,341,995 - 1,373,824 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	1,128,394 - 1,133,221 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	1,128,394 - 1,133,221 (+)	Ensembl	panpan1.1		panPan2

CUNH20orf202
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	169,018,182 - 169,023,993 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936485	17,448,857 - 17,455,219 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936485	17,449,547 - 17,458,246 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

C17H20orf202
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	17	34,081,945 - 34,086,737 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	38,631,380 - 38,636,129 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CUNH20orf202
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624741	2,470,446 - 2,474,866 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624741	2,460,078 - 2,474,789 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in C24H20orf202
76 total Variants

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_022409491	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038432912	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038509602	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038572986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038635618	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000024	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000263	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000063	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000376	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000024	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000086058 ⟹ ENSCAFP00000059854

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	24	19,783,748 - 19,788,401 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845034281 ⟹ ENSCAFP00845026832

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	24	20,473,753 - 20,492,395 (-)	Ensembl

RefSeq Acc Id:

XM_022409491 ⟹ XP_022265199

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	24	19,781,931 - 19,787,929 (-)	NCBI
Dog10K_Boxer_Tasha	24	19,437,603 - 19,455,359 (-)	NCBI

Sequence:

show sequence

CCAGACCCTGCTCCCTGCCTGAAGCAGGTCCCTCGGGCCCATCACCAGGTCAGTGACAACATCT
TCTCCAAGGACACTGAGATGAAAACAGAAGCACCAACCACGAGTCTTGGACAGACCCTGGAGTG
GCTGAGAAAGGAGCTGGCTGAGATGCAAGTGCAAGACCAGAGACTCCTGCTCACACTGAGGCAT
CTTCACAGCGTCCTGGAGGAGCTGCGTACTGAGAGCGCCCACTGGGAGGATGCCAGGTCCAGCG
GAGGGACGTCCCCTATCAGAGCTCGGGCAGGCTCTGAAACCAGGGGCCGCCCTCCCGTCTCTTC
CAAAGGGCTCGCCCGGCTCATACGAGGGGAAGACAGCAGACGAAGCTCCCTCCCTTAGCTGGCC
AGGCCTGACCCCCCGGGGCTTGAACCTCCCACCACTTGTCCAAACTTTGATTGTGATATTGCTG
GGACAGAGCCCTGGGAGTCAGGGAGCTGGGGCTCTGGGTTCTTGTCTGCATTCATCTGCCGTGT
GTCCCTAAACCCATCACTCAACTTCTCTGCGTCACTGGTTCCTTTTCTGCTGCCCCGCCGGGGT
TTTGGTGGGACACAAATAAGTTATCAGATGTGGACATGCTTTGAAAACACAAACATGTTACATG
GCCTCTGGCAAAGCTCCGAGACATCAATCCTGCCCTCGCGCATTCCCCCCCAGGTGATTGTTAA
ACAAGAGCTCAATGTGTGTAGTAGATGTTTCCTGTTGCCATGGTGAACAACAGACCCCCCCACC
CCCACCCCCACCCCCTTCACAGTGACTCCACAATTGTTTACTGTCTTCCCAGTAGGTCTGCACT
TCCCTCTCTGAAAGCCACAGGCTCCCACCGACTCTGGCCAGAGCGATGGGTATGAGACCAGGCC
TGGCCAATAAAAACTCACGGTCACCCTCATAACATGATTGGCCCAAAGGGAGGGCATATGACTC
AACAGAGCCAATCACAGTCCTTCTCTGGGATCACTCTCTGGATGGTGTTGCCACTGCATTCGCC
AGGCAGGGCCTGCCAATGGCCACATTCCCCCGCCAGGTGAAGCGGGCATGAGTGCATTAAGGAA
AGAAAGAGAGGAAGAGGGAGGGCCACGGAGAGCTGGGCAGAGAGGAAGGGCGCTGGCTGCTTTT
AGTCCCTGGTTTCAGGCCCTAGTTCTGTGAGTTACTCCTGCGTTCTTTCCAGTGACGGAAACCA
GTAAATGCCACCACCACCACCATCCTCCAGCACACACACCAGTTTGGTTTTGGTTAAGCTGACT
TGAGTAGAGTTTCCCTCAGGTGCAAACAAAACGATCCTGAAGAACCCAATCCAGATGTTCAAAG
AAGCAAAAAGCAATGCTGAAGAAAAGGGCATTTTGCTCACTCGGGGTTGGCAACAACAGCCTTT
CAACCGCAGACTGGGGACTGTGATGTAGCAGAACACTCCGTCATATGGGGTGCTGGGGTCATGA
CTTCGACAACTTGTATCTGCCCATAGGAGAGACTTTAGCTAGGAGAAAATTTTAAAGGCTTCGT
GTTAAGATGATCCAGTTATTGGTAGGACTTTTTATTATTGAAAATCCACTTGCATGCTGTTAGG
ATACTGTTTTTATGGTTTTGAAAAAGTAAACCCCTGTATACAGAAGCAAAGTGTGTGTGTGGAT
GTTATCTGTACAATGTTTCTAGTCAGACTAACCTGGGATTTTAATACAGTCTTTGATAAAATAA
AAAAATACTTGTCTACCAACAGCTGAATGGGTAAACAAACATTTTGTGGCATGTTCATAAAATG
GAGTATTAGTCCACCTTAAAAAGGAAGGAAATTCTGACACAAGCTACAACACAGGTGAACCGTG
AAGACATGATGCTAAGTGACATGAGCTAGTCACAGAAGGACACTGTATGATTCCACTTATATAT
GAGGTCAAATCTATAGGGGACAGAGTGGAATGGTGACTGCCAGGAACTTAAGGAGGGGACAGTG
GGGAGTTAGTGTCTAAAGGGTACAGAGTTTCAGTTTTGCAAGATAAAAAAGTTCTATGGATAAA
TGGTGGTGGTGGTATGACTGTGTGAATATACTTGATACCACTGAACTGCATGCTTAAAGGTGGT
TAAAATGGGAGTGCCTGGGTGGCTCAGTCAGTTAAGTGTTTGCCTTCAGCTCAGGTCATGATCC
CAACATCCTGGGATTGAGC

hide sequence

RefSeq Acc Id:

XM_038432912 ⟹ XP_038288840

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	24	20,473,886 - 20,478,952 (-)	NCBI

RefSeq Acc Id:

XM_038509602 ⟹ XP_038365530

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	24	19,751,628 - 19,756,692 (-)	NCBI

RefSeq Acc Id:

XM_038572986 ⟹ XP_038428914

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	24	20,288,008 - 20,293,057 (-)	NCBI

RefSeq Acc Id:

XM_038635618 ⟹ XP_038491546

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	24	19,856,987 - 19,862,037 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_022265199	(Get FASTA)	NCBI Sequence Viewer
	XP_038288840	(Get FASTA)	NCBI Sequence Viewer
	XP_038365530	(Get FASTA)	NCBI Sequence Viewer
	XP_038428914	(Get FASTA)	NCBI Sequence Viewer
	XP_038491546	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000059854.1
	ENSCAFP00030009973.1
	ENSCAFP00040031803.1
	ENSCAFP00845026832.1

RefSeq Acc Id:	XP_022265199 ⟸ XM_022409491
- Peptide Label:	isoform X2
- Sequence:	show sequence PDPAPCLKQVPRAHHQVSDNIFSKDTEMKTEAPTTSLGQTLEWLRKELAEMQVQDQRLLLTLRH LHSVLEELRTESAHWEDARSSGGTSPIRARAGSETRGRPPVSSKGLARLIRGEDSRRSSLP hide sequence

RefSeq Acc Id:

ENSCAFP00000059854 ⟸ ENSCAFT00000086058

RefSeq Acc Id:	XP_038365530 ⟸ XM_038509602
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038491546 ⟸ XM_038635618
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038288840 ⟸ XM_038432912
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0TAF2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038428914 ⟸ XM_038572986
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0TAF2 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845026832 ⟸ ENSCAFT00845034281

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000042476	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030006209	UniProtKB/TrEMBL
	ENSCAFG00040019748	UniProtKB/TrEMBL
	ENSCAFG00845019452	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000086058.2	UniProtKB/TrEMBL
	ENSCAFT00030011402.1	UniProtKB/TrEMBL
	ENSCAFT00040036517.1	UniProtKB/TrEMBL
	ENSCAFT00845034281.1	UniProtKB/TrEMBL
NCBI Gene	C24H20orf202	ENTREZGENE
PANTHER	PROTEIN FAM167A	UniProtKB/TrEMBL
	TRANSMEMBRANE 74B, OPPOSITE STRAND	UniProtKB/TrEMBL
UniProt	A0A8C0MIQ5_CANLF	UniProtKB/TrEMBL
	A0A8C0TAF2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3PEI3_CANLF	UniProtKB/TrEMBL
VGNC ID	VGNC:108012	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-09-12	C24H20orf202	chromosome 24 C20orf202 homolog		chromosome 24 open reading frame, human C20orf202	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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