REXO6 (RNA exonuclease 6 (putative)) - Rat Genome Database

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Gene: REXO6 (RNA exonuclease 6 (putative)) Canis lupus familiaris
Analyze
Symbol: REXO6
Name: RNA exonuclease 6 (putative)
RGD ID: 12314018
Description: ENCODES a protein that exhibits exonuclease activity (inferred); nucleic acid binding (inferred); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC102152733; RNA exonuclease 1 homolog; uncharacterized LOC102152733; uncharacterized protein LOC102152733
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11145,378,285 - 45,414,679 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1144,056,516 - 44,092,206 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01146,325,927 - 46,361,506 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1146,325,818 - 46,359,893 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11144,982,123 - 45,017,968 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01144,872,095 - 44,907,779 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01145,618,656 - 45,654,355 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in REXO6
467 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium
Low 7 2 2 5 1
Below cutoff 5 5 15 4 6 4 6 2 7 8 9 4

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00845032487   ⟹   ENSCAFP00845025402
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1146,325,818 - 46,359,893 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845032621   ⟹   ENSCAFP00845025512
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1146,325,818 - 46,359,893 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845032740   ⟹   ENSCAFP00845025613
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1146,325,818 - 46,359,893 (-)Ensembl
RefSeq Acc Id: XM_038490461   ⟹   XP_038346389
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11144,982,123 - 45,017,968 (-)NCBI
RefSeq Acc Id: XM_038552571   ⟹   XP_038408499
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01145,618,656 - 45,654,355 (-)NCBI
RefSeq Acc Id: XM_038616432   ⟹   XP_038472360
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01144,872,095 - 44,907,779 (-)NCBI
RefSeq Acc Id: XM_038654580   ⟹   XP_038510508
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1144,056,516 - 44,092,206 (-)NCBI
RefSeq Acc Id: XM_038681902   ⟹   XP_038537830
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01146,325,927 - 46,361,506 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_038346389   ⟸   XM_038490461
RefSeq Acc Id: XP_038472360   ⟸   XM_038616432
RefSeq Acc Id: XP_038537830   ⟸   XM_038681902
- UniProtKB: A0A8I3PDC0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038510508   ⟸   XM_038654580
- UniProtKB: A0A8P0T427 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038408499   ⟸   XM_038552571
- UniProtKB: A0A8P0T427 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845025613   ⟸   ENSCAFT00845032740
RefSeq Acc Id: ENSCAFP00845025402   ⟸   ENSCAFT00845032487
RefSeq Acc Id: ENSCAFP00845025512   ⟸   ENSCAFT00845032621
Protein Domains
Exonuclease


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000029839 UniProtKB/TrEMBL
  ENSCAFG00845018372 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000069969.2 UniProtKB/TrEMBL
  ENSCAFT00845032487 ENTREZGENE
  ENSCAFT00845032487.1 UniProtKB/TrEMBL
  ENSCAFT00845032621.1 UniProtKB/TrEMBL
  ENSCAFT00845032740.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.420.10 UniProtKB/TrEMBL
InterPro EloA-BP1 UniProtKB/TrEMBL
  Exonuclease_RNaseT/DNA_pol3 UniProtKB/TrEMBL
  REX1-like_exo UniProtKB/TrEMBL
  REXO1/3/4-like UniProtKB/TrEMBL
  RNaseH-like_sf UniProtKB/TrEMBL
  RNaseH_sf UniProtKB/TrEMBL
NCBI Gene LOC102152733 ENTREZGENE
PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED UniProtKB/TrEMBL
  ZGC:152968 UniProtKB/TrEMBL
Pfam EloA-BP1 UniProtKB/TrEMBL
SMART EXOIII UniProtKB/TrEMBL
Superfamily-SCOP SSF53098 UniProtKB/TrEMBL
UniProt A0A8I3P3Y5_CANLF UniProtKB/TrEMBL
  A0A8I3P7F8_CANLF UniProtKB/TrEMBL
  A0A8I3PDC0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0T427 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:111653 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-05-15 REXO6  RNA exonuclease 6 (putative)  LOC102152733  RNA exonuclease 1 homolog  Symbol and/or name change 19259463 PROVISIONAL
2017-09-12 LOC102152733  RNA exonuclease 1 homolog    uncharacterized LOC102152733  Symbol and/or name change 5135510 APPROVED