CS (citrate synthase) - Rat Genome Database

Name: CS
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: CS (citrate synthase) Canis lupus familiaris

Analyze

Symbol:

Name:

citrate synthase

RGD ID:

12313293

Description:

ENCODES a protein that exhibits citrate (Si)-synthase activity (ortholog); citrate synthase activity (ortholog); INVOLVED IN acetyl-CoA metabolic process (ortholog); citrate metabolic process (ortholog); heart development (ortholog); PARTICIPATES IN citric acid cycle pathway; fumaric aciduria pathway; mitochondrial complex II deficiency pathway; ASSOCIATED WITH atrial fibrillation (ortholog); bipolar disorder (ortholog); Brain Hypoxia-Ischemia (ortholog); FOUND IN mitochondrial matrix (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

canopy 2 homolog; canopy FGF signaling regulator 2; citrate synthase, mitochondrial; CNPY2

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CS (citrate synthase)	HGNC	EggNOG, Ensembl, OMA, Panther, Treefam
Mus musculus (house mouse):	Cs (citrate synthase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Cs (citrate synthase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cs (citrate synthase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CS (citrate synthase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cs (citrate synthase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CS (citrate synthase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CS (citrate synthase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	584,000 - 611,351 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	584,904 - 611,436 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	647,257 - 674,790 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	592,484 - 620,012 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	592,484 - 620,005 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	569,926 - 597,448 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	812,910 - 840,419 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	937,007 - 964,321 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

atrial fibrillation (ISO)

bipolar disorder (ISO)

Brain Hypoxia-Ischemia (ISO)

Cardiomegaly (ISO)

cardiomyopathy (ISO)

Chronic Allograft Nephropathy (ISO)

congestive heart failure (ISO)

dilated cardiomyopathy (ISO)

Endotoxemia (ISO)

Experimental Diabetes Mellitus (ISO)

genetic disease (ISO)

hyperthyroidism (ISO)

hypertrophic cardiomyopathy (ISO)

hypothyroidism (ISO)

Hypoxia (ISO)

limb ischemia (ISO)

Liver Reperfusion Injury (ISO)

myocardial infarction (ISO)

obesity (ISO)

Sepsis (ISO)

Ventricular Dysfunction, Left (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

acetyl-CoA metabolic process (ISO)

carbohydrate metabolic process (IEA)

citrate metabolic process (IEA,ISO)

heart development (ISO)

oxaloacetate metabolic process (ISO)

tricarboxylic acid cycle (IEA,ISO)

Cellular Component

mitochondrial matrix (IEA,ISO)

mitochondrion (IEA)

Molecular Function

acyltransferase activity, acyl groups converted into alkyl on transfer (IEA)

citrate (Si)-synthase activity (IEA,ISO)

citrate synthase activity (ISO)

transferase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

citric acid cycle pathway (ISO)

fumaric aciduria pathway (ISO)

mitochondrial complex II deficiency pathway (ISO)

pyruvate dehydrogenase E2 deficiency pathway (ISO)

pyruvate dehydrogenase E3 deficiency pathway (ISO)

References

Additional References at PubMed

PMID:16751257	PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

CS
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	584,000 - 611,351 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	584,904 - 611,436 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	647,257 - 674,790 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	592,484 - 620,012 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	592,484 - 620,005 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	569,926 - 597,448 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	812,910 - 840,419 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	937,007 - 964,321 (-)	NCBI		UU_Cfam_GSD_1.0

CS
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	56,271,699 - 56,300,330 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	56,271,699 - 56,300,391 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	56,665,483 - 56,694,114 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	54,951,750 - 54,980,442 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	12	56,318,264 - 56,346,961 (-)	NCBI		Celera
Cytogenetic Map	12	q13.3	NCBI
HuRef	12	53,704,180 - 53,732,652 (-)	NCBI		HuRef
CHM1_1	12	56,632,888 - 56,661,575 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	56,239,343 - 56,267,970 (-)	NCBI		T2T-CHM13v2.0

Cs
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	128,173,596 - 128,198,351 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	128,173,603 - 128,198,348 (+)	Ensembl		GRCm39 Ensembl
GRCm38	10	128,337,727 - 128,362,482 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	128,337,734 - 128,362,479 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	127,774,888 - 127,799,535 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	127,740,781 - 127,765,428 (+)	NCBI		MGSCv36	mm8
Celera	10	130,726,084 - 130,750,750 (+)	NCBI		Celera
Cytogenetic Map	10	D3	NCBI
cM Map	10	76.53	NCBI

Cs
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	1,348,389 - 1,374,624 (+)	NCBI		GRCr8
mRatBN7.2	7	758,074 - 791,421 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	758,345 - 791,421 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	3,522,514 - 3,550,877 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	5,398,497 - 5,426,861 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	5,698,983 - 5,725,551 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	2,752,680 - 2,778,963 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	2,752,680 - 2,778,963 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	2,731,092 - 2,757,427 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	1,626,181 - 1,652,197 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	1,626,180 - 1,652,197 (+)	NCBI
Celera	7	639,242 - 663,715 (+)	NCBI		Celera
Cytogenetic Map	7	q11	NCBI

Cs
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955458	3,881,798 - 3,893,401 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955458	3,881,798 - 3,913,044 (-)	NCBI	ChiLan1.0	ChiLan1.0

CS
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	38,028,323 - 38,060,438 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	38,028,468 - 38,057,206 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	32,614,982 - 32,643,719 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	32,867,225 - 32,895,854 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	32,867,225 - 32,895,854 (+)	Ensembl	panpan1.1		panPan2

Cs
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	58,165,176 - 58,193,309 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936646	678,307 - 692,777 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936646	676,926 - 704,988 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CS
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	21,666,585 - 21,700,711 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	21,669,778 - 21,700,737 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	23,162,491 - 23,186,518 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3
Pig Cytomap	5	p12-p13	NCBI

CS
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	52,224,667 - 52,253,552 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	52,222,724 - 52,253,307 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	193,729,868 - 193,761,327 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in CS
264 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium	5	5	22	6	6	6	6	6	12		10	6
Low										8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_022424052	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038487782	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038487783	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038549672	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038549673	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038613638	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038613639	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038679003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038679004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_531634	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ403135	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000097	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000358	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000000188 ⟹ ENSCAFP00000000167

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	10	585,392 - 604,640 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000087840 ⟹ ENSCAFP00000049199

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	10	584,904 - 611,436 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845013633 ⟹ ENSCAFP00845010587

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	10	592,484 - 619,986 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845013692 ⟹ ENSCAFP00845010628

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	10	592,488 - 620,005 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845013771 ⟹ ENSCAFP00845010689

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	10	592,490 - 619,957 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845013817 ⟹ ENSCAFP00845010719

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	10	592,490 - 613,284 (-)	Ensembl

RefSeq Acc Id:

XM_022424052 ⟹ XP_022279760

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	10	584,000 - 602,927 (-)	NCBI
Dog10K_Boxer_Tasha	10	647,257 - 666,182 (-)	NCBI

Sequence:

show sequence

GCACAGAACCATTAAATGACGTGGCTGGAGTCACAGAATGCATCTTGTCTTGTTCTTGCTGCTC
GGCATGCCAGTGCCTCCTCTACGAATTTGAAAGACATATTGGCCGACTTGATACCGAAGGAGCA
GGCCAGAATAAAGACCTTCAGGCAGCAACATGGCAAGACAGTGGTGGGCCAAATCACTGTGGAC
ATGATGTACGGTGGCATGAGAGGCATGAAGGGATTAGTATATGAAACATCAGTTCTTGATCCTG
ATGAGGGCATCCGTTTCCGAGGCTACAGTATCCCTGAGTGCCAGAAACTGCTGCCTAAGGCTAA
AGGCGGTGAAGAACCCCTGCCAGAGGGCTTATTTTGGTTGCTGGTAACTGGACAAATCCCAACA
GAAGAACAGGTGTCTTGGCTCTCAAAAGAGTGGGCAAAGAGGGCAGCTCTACCTTCCCATGTGG
TCACCATGCTGGACAACTTTCCTACCAATCTACACCCTATGTCTCAGCTCAGTGCAGCCATTAC
AGCCCTCAACAGTGAAAGTAACTTTGCCCGAGCATATGCAGAGGGTATCAACCGAACCAAGTAC
TGGGAGTTGATTTATGAAGATTGTATGGATCTGATCGCAAAGCTACCTTGTGTTGCAGCAAAGA
TTTACCGGAATCTCTACCGAGAGGGCAGCAGTATTGGGGCCATTGACTCTAAGCTGGACTGGTC
CCACAATTTTACCAACATGTTAGGCTATACTGATGCTCAGTTCACTGAGCTCATGCGCTTGTAC
CTCACCATCCACAGTGACCATGAGGGAGGCAATGTAAGTGCCCATACCAGCCACCTGGTGGGCA
GTGCCCTTTCAGACCCCTACCTGTCCTTTGCGGCAGCCATGAACGGGCTAGCAGGGCCCCTGCA
TGGTTTGGCAAATCAGGAAGTACTTGTTTGGCTCACACAACTACAGAAAGAAGTTGGCAAAGAT
GTGTCAGATGAGAAGTTACGAGACTACATATGGAACACACTGAACTCAGGACGGGTTGTCCCAG
GCTATGGCCATGCAGTACTAAGGAAGACTGACCCACGATATACCTGTCAGCGAGAGTTTGCTCT
GAAACACCTGCCTCATGACTCCATGTTTAAGCTGGTTGCTCAGCTGTACAAGATTGTGCCCAAT
GTCCTGTTAGAGCAGGGCAAGGCCAAGAACCCTTGGCCCAATGTAGATGCTCACAGTGGCGTGC
TGCTCCAGTACTACGGCATGACAGAGATGAATTACTACACAGTCCTGTTTGGGGTATCACGAGC
ACTGGGTGTACTGGCACAGCTCATCTGGAGCCGAGCCCTCGGCTTCCCACTAGAGAGACCCAAG
TCCATGAGCACAGATGGTCTGATGAAGTTTGTGGACTCTAAGTCAGGGTAAAACTGAAGACTGG
GGGAGACTAACTACCAGAAAGTGAGGGAGCTTTAAAAAAAAAAAAGTATAATTTTGATTTGTTT
CAGGGGGCTTTTTAAGACTTAAGATTAAATTGTATCTGAGGCACTGATAATACGTTGGAGGTTA
AAATATAAATTAAGACTTTAAGAGATAAAAAGTAACTCCTTCCTCCCCAACCAGTTCCTTTCTC
TTGCCTGGTGAGTTGCCCATCAACTGTAGGGTGACCAGGACTAATGCATGTGGTATGGGTTAGG
TTTGGGCCCCCCACCATCTCTAGAGTGAGAATCTGGCTCTCCTTTCCATGGGTTAAAGCTGGTT
GCAGAGAATCTGCAGTCACTTCAGAGCTTTCGGTTCTGTTCTCTCCAGCCCTCCGTAGGCCAGC
AAATCAGGACTCCGCCTTTTTTGTTTCCATAGGAATCATGTTGGATTATCAGCTCTATCAAGCC
CCATCACCCTCTCCCATGCACACAGACACTTCCTAGCAAGACCTGTTGGTTAGTTGGACATCTT
TGGCATTTTTTTTTATGCTATCAAGTGACCATAAAGGCCATTAACATTTTGTGACTGGCACCCA
GTGTTGTTGGTTTTTTTTTTTAATTATCCCATGAAAATTAAGATCTGAAGTGTTCCATTCCCCA
CTACTTTGTTCCCTCCTTCCAGATTTTCTGTACCTGCTGCACTTCAAGCTGAGGGTACTCTGGA
CCTACCCTTCTTGGTCCTTACTAGAGACCTCTTTCAGCAGGTTATATATGCCACTATCTAAGTA
AGTAGTAGTCCTTCCCAGTCATTTGGCTTTATGAGTGCTTAACATGATCTAAGTTTTCACTTCT
GCGGAACACAAGCCACTACCCTCTGACCTTTTTTCTCCCCTTTATTTTAATATGCTATAGGCCA
CTGAATAAGGACTTGGGAATGTCCAGAATGGTATCTTCAGAGTCTGGTTCCAGGGATATAGGTA
CTACTTTCTGAGCAGGGAAATTATTTAAGATTGGACGTGGTTTCCTTTGACTATCAGGTTCTGG
GGCTAAGAACATTAAAAATAGTAGGCCTCCCTTCTCTTTTCCTGCTACAAGGAAATATCCCTTT
ATTTATCAAGGTCCTTATCCAGTCCCTTCCCCAAGAGCTTACAGTACAGTGCTTATTTCTTAGA
AGCCCCATTTGCACAGGTTTTCAGTGACTCAGAATGCTCTACTGCCTTTTCTTTAAGAAAGGAT
TGAAATACACTCCTACTGTGCCCCCTTCCTCCCTTGCAAACTCCTGCCTGTGTTTGTGTGGATC
CCTAATCCCTAGAGCCACGCTGAGATGGACACATTGTCTGTAAACCCCTGGGTAACTGTCAAGT
CATGATCCAGACTTCAGGTTGTTCTGTATAAAATGCAAAATAAATGTTTTTATTAACAATG

hide sequence

RefSeq Acc Id:

XM_038487782 ⟹ XP_038343710

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	10	569,926 - 597,448 (-)	NCBI

RefSeq Acc Id:

XM_038487783 ⟹ XP_038343711

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	10	569,926 - 588,840 (-)	NCBI

RefSeq Acc Id:

XM_038549672 ⟹ XP_038405600

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	10	937,007 - 964,321 (-)	NCBI

RefSeq Acc Id:

XM_038549673 ⟹ XP_038405601

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	10	937,007 - 955,715 (-)	NCBI

RefSeq Acc Id:

XM_038613638 ⟹ XP_038469566

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	10	812,910 - 840,419 (-)	NCBI

RefSeq Acc Id:

XM_038613639 ⟹ XP_038469567

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	10	812,910 - 831,812 (-)	NCBI

RefSeq Acc Id:

XM_038679003 ⟹ XP_038534931

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	10	592,484 - 620,012 (-)	NCBI

RefSeq Acc Id:

XM_038679004 ⟹ XP_038534932

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	10	592,484 - 611,402 (-)	NCBI

RefSeq Acc Id:

XM_531634 ⟹ XP_531634

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	10	584,000 - 611,351 (-)	NCBI
Dog10K_Boxer_Tasha	10	647,257 - 674,790 (-)	NCBI

Sequence:

show sequence

GCGCCGCCGCCGGCTCGTCTCCCCTTTCCCTCAGCCGCCTCCTTTCAACCTTGTCGGCCCGTCG
GCGCGGCCCTCGGTGCAGCGGCGGCGGCTCCCCGGCCGCAGCTCTCCCGGTCCTGCCTCCCCGC
CGGAAGCCCGCGTTCGCCCGTCATGGCTCTACTCACTGCGGCCGCCCGGCTCTTCGGAGCCAAG
AATGCATCTTGTCTTGTTCTTGCTGCTCGGCATGCCAGTGCCTCCTCTACGAATTTGAAAGACA
TATTGGCCGACTTGATACCGAAGGAGCAGGCCAGAATAAAGACCTTCAGGCAGCAACATGGCAA
GACAGTGGTGGGCCAAATCACTGTGGACATGATGTACGGTGGCATGAGAGGCATGAAGGGATTA
GTATATGAAACATCAGTTCTTGATCCTGATGAGGGCATCCGTTTCCGAGGCTACAGTATCCCTG
AGTGCCAGAAACTGCTGCCTAAGGCTAAAGGCGGTGAAGAACCCCTGCCAGAGGGCTTATTTTG
GTTGCTGGTAACTGGACAAATCCCAACAGAAGAACAGGTGTCTTGGCTCTCAAAAGAGTGGGCA
AAGAGGGCAGCTCTACCTTCCCATGTGGTCACCATGCTGGACAACTTTCCTACCAATCTACACC
CTATGTCTCAGCTCAGTGCAGCCATTACAGCCCTCAACAGTGAAAGTAACTTTGCCCGAGCATA
TGCAGAGGGTATCAACCGAACCAAGTACTGGGAGTTGATTTATGAAGATTGTATGGATCTGATC
GCAAAGCTACCTTGTGTTGCAGCAAAGATTTACCGGAATCTCTACCGAGAGGGCAGCAGTATTG
GGGCCATTGACTCTAAGCTGGACTGGTCCCACAATTTTACCAACATGTTAGGCTATACTGATGC
TCAGTTCACTGAGCTCATGCGCTTGTACCTCACCATCCACAGTGACCATGAGGGAGGCAATGTA
AGTGCCCATACCAGCCACCTGGTGGGCAGTGCCCTTTCAGACCCCTACCTGTCCTTTGCGGCAG
CCATGAACGGGCTAGCAGGGCCCCTGCATGGTTTGGCAAATCAGGAAGTACTTGTTTGGCTCAC
ACAACTACAGAAAGAAGTTGGCAAAGATGTGTCAGATGAGAAGTTACGAGACTACATATGGAAC
ACACTGAACTCAGGACGGGTTGTCCCAGGCTATGGCCATGCAGTACTAAGGAAGACTGACCCAC
GATATACCTGTCAGCGAGAGTTTGCTCTGAAACACCTGCCTCATGACTCCATGTTTAAGCTGGT
TGCTCAGCTGTACAAGATTGTGCCCAATGTCCTGTTAGAGCAGGGCAAGGCCAAGAACCCTTGG
CCCAATGTAGATGCTCACAGTGGCGTGCTGCTCCAGTACTACGGCATGACAGAGATGAATTACT
ACACAGTCCTGTTTGGGGTATCACGAGCACTGGGTGTACTGGCACAGCTCATCTGGAGCCGAGC
CCTCGGCTTCCCACTAGAGAGACCCAAGTCCATGAGCACAGATGGTCTGATGAAGTTTGTGGAC
TCTAAGTCAGGGTAAAACTGAAGACTGGGGGAGACTAACTACCAGAAAGTGAGGGAGCTTTAAA
AAAAAAAAAGTATAATTTTGATTTGTTTCAGGGGGCTTTTTAAGACTTAAGATTAAATTGTATC
TGAGGCACTGATAATACGTTGGAGGTTAAAATATAAATTAAGACTTTAAGAGATAAAAAGTAAC
TCCTTCCTCCCCAACCAGTTCCTTTCTCTTGCCTGGTGAGTTGCCCATCAACTGTAGGGTGACC
AGGACTAATGCATGTGGTATGGGTTAGGTTTGGGCCCCCCACCATCTCTAGAGTGAGAATCTGG
CTCTCCTTTCCATGGGTTAAAGCTGGTTGCAGAGAATCTGCAGTCACTTCAGAGCTTTCGGTTC
TGTTCTCTCCAGCCCTCCGTAGGCCAGCAAATCAGGACTCCGCCTTTTTTGTTTCCATAGGAAT
CATGTTGGATTATCAGCTCTATCAAGCCCCATCACCCTCTCCCATGCACACAGACACTTCCTAG
CAAGACCTGTTGGTTAGTTGGACATCTTTGGCATTTTTTTTTATGCTATCAAGTGACCATAAAG
GCCATTAACATTTTGTGACTGGCACCCAGTGTTGTTGGTTTTTTTTTTTAATTATCCCATGAAA
ATTAAGATCTGAAGTGTTCCATTCCCCACTACTTTGTTCCCTCCTTCCAGATTTTCTGTACCTG
CTGCACTTCAAGCTGAGGGTACTCTGGACCTACCCTTCTTGGTCCTTACTAGAGACCTCTTTCA
GCAGGTTATATATGCCACTATCTAAGTAAGTAGTAGTCCTTCCCAGTCATTTGGCTTTATGAGT
GCTTAACATGATCTAAGTTTTCACTTCTGCGGAACACAAGCCACTACCCTCTGACCTTTTTTCT
CCCCTTTATTTTAATATGCTATAGGCCACTGAATAAGGACTTGGGAATGTCCAGAATGGTATCT
TCAGAGTCTGGTTCCAGGGATATAGGTACTACTTTCTGAGCAGGGAAATTATTTAAGATTGGAC
GTGGTTTCCTTTGACTATCAGGTTCTGGGGCTAAGAACATTAAAAATAGTAGGCCTCCCTTCTC
TTTTCCTGCTACAAGGAAATATCCCTTTATTTATCAAGGTCCTTATCCAGTCCCTTCCCCAAGA
GCTTACAGTACAGTGCTTATTTCTTAGAAGCCCCATTTGCACAGGTTTTCAGTGACTCAGAATG
CTCTACTGCCTTTTCTTTAAGAAAGGATTGAAATACACTCCTACTGTGCCCCCTTCCTCCCTTG
CAAACTCCTGCCTGTGTTTGTGTGGATCCCTAATCCCTAGAGCCACGCTGAGATGGACACATTG
TCTGTAAACCCCTGGGTAACTGTCAAGTCATGATCCAGACTTCAGGTTGTTCTGTATAAAATGC
AAAATAAATGTTTTTATTAACAATG

hide sequence

Protein Sequences


Protein RefSeqs	XP_022279760	(Get FASTA)	NCBI Sequence Viewer
	XP_038343710	(Get FASTA)	NCBI Sequence Viewer
	XP_038343711	(Get FASTA)	NCBI Sequence Viewer
	XP_038405600	(Get FASTA)	NCBI Sequence Viewer
	XP_038405601	(Get FASTA)	NCBI Sequence Viewer
	XP_038469566	(Get FASTA)	NCBI Sequence Viewer
	XP_038469567	(Get FASTA)	NCBI Sequence Viewer
	XP_038534931	(Get FASTA)	NCBI Sequence Viewer
	XP_038534932	(Get FASTA)	NCBI Sequence Viewer
	XP_531634	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	ABD77268	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000000167.4
	ENSCAFP00000049199.2
	ENSCAFP00000070964.1
	ENSCAFP00000071598.1
	ENSCAFP00030022481.1
	ENSCAFP00030022554.1
	ENSCAFP00040008600.1
	ENSCAFP00040008629.1
	ENSCAFP00845010587.1
	ENSCAFP00845010628.1
	ENSCAFP00845010689
	ENSCAFP00845010689.1
	ENSCAFP00845010719
	ENSCAFP00845010719.1

RefSeq Acc Id:	XP_531634 ⟸ XM_531634
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0QGS7 (UniProtKB/TrEMBL), A0A8I3RVM2 (UniProtKB/TrEMBL), A0A8C0Q4T7 (UniProtKB/TrEMBL), A0A8I3N305 (UniProtKB/TrEMBL)
- Sequence:	show sequence MALLTAAARLFGAKNASCLVLAARHASASSTNLKDILADLIPKEQARIKTFRQQHGKTVVGQIT VDMMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKLLPKAKGGEEPLPEGLFWLLVTGQI PTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGINRT KYWELIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMR LYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVG KDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPHDSMFKLVAQLYKIV PNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLER PKSMSTDGLMKFVDSKSG hide sequence

RefSeq Acc Id:	XP_022279760 ⟸ XM_022424052
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0Q4T7 (UniProtKB/TrEMBL), A0A8I3N305 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTWLESQNASCLVLAARHASASSTNLKDILADLIPKEQARIKTFRQQHGKTVVGQITVDMMYGG MRGMKGLVYETSVLDPDEGIRFRGYSIPECQKLLPKAKGGEEPLPEGLFWLLVTGQIPTEEQVS WLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGINRTKYWELIY EDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHS DHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEK LRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPHDSMFKLVAQLYKIVPNVLLEQ GKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTD GLMKFVDSKSG hide sequence

RefSeq Acc Id:

ENSCAFP00000049199 ⟸ ENSCAFT00000087840

RefSeq Acc Id:

ENSCAFP00000000167 ⟸ ENSCAFT00000000188

RefSeq Acc Id:	XP_038343710 ⟸ XM_038487782
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038343711 ⟸ XM_038487783
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038469566 ⟸ XM_038613638
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038469567 ⟸ XM_038613639
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038534931 ⟸ XM_038679003
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0QGS7 (UniProtKB/TrEMBL), A0A8I3RVM2 (UniProtKB/TrEMBL), A0A8C0Q4T7 (UniProtKB/TrEMBL), A0A8I3N305 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038534932 ⟸ XM_038679004
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0Q4T7 (UniProtKB/TrEMBL), A0A8I3N305 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038405600 ⟸ XM_038549672
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0Q4T7 (UniProtKB/TrEMBL), A0A8C0QGS7 (UniProtKB/TrEMBL), A0A8I3N305 (UniProtKB/TrEMBL), A0A8I3RVM2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038405601 ⟸ XM_038549673
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0Q4T7 (UniProtKB/TrEMBL), A0A8I3N305 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845010719 ⟸ ENSCAFT00845013817

RefSeq Acc Id:

ENSCAFP00845010628 ⟸ ENSCAFT00845013692

RefSeq Acc Id:

ENSCAFP00845010689 ⟸ ENSCAFT00845013771

RefSeq Acc Id:

ENSCAFP00845010587 ⟸ ENSCAFT00845013633

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000000115	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030013773	UniProtKB/TrEMBL
	ENSCAFG00040005230	UniProtKB/TrEMBL
	ENSCAFG00845007644	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000000188.5	UniProtKB/TrEMBL
	ENSCAFT00000087840.2	UniProtKB/TrEMBL
	ENSCAFT00000099686.1	UniProtKB/TrEMBL
	ENSCAFT00000105446.1	UniProtKB/TrEMBL
	ENSCAFT00030025744.1	UniProtKB/TrEMBL
	ENSCAFT00030025823.1	UniProtKB/TrEMBL
	ENSCAFT00040009917.1	UniProtKB/TrEMBL
	ENSCAFT00040009951.1	UniProtKB/TrEMBL
	ENSCAFT00845013633.1	UniProtKB/TrEMBL
	ENSCAFT00845013692.1	UniProtKB/TrEMBL
	ENSCAFT00845013771	ENTREZGENE
	ENSCAFT00845013771.1	UniProtKB/TrEMBL
	ENSCAFT00845013817	ENTREZGENE
	ENSCAFT00845013817.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.230.10	UniProtKB/TrEMBL
	1.10.580.10	UniProtKB/TrEMBL
InterPro	Citrate_synth-like_lrg_a-sub	UniProtKB/TrEMBL
	Citrate_synth-like_sm_a-sub	UniProtKB/TrEMBL
	Citrate_synthase	UniProtKB/TrEMBL
	Citrate_synthase_AS	UniProtKB/TrEMBL
	Citrate_synthase_euk	UniProtKB/TrEMBL
	Citrate_synthase_sf	UniProtKB/TrEMBL
NCBI Gene	CS	ENTREZGENE
PANTHER	CITRATE SYNTHASE, MITOCHONDRIAL	UniProtKB/TrEMBL
	PTHR11739	UniProtKB/TrEMBL
Pfam	Citrate_synt	UniProtKB/TrEMBL
PRINTS	CITRTSNTHASE	UniProtKB/TrEMBL
PROSITE	CITRATE_SYNTHASE	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48256	UniProtKB/TrEMBL
UniProt	A0A8C0Q4T7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0QGS7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3N305	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3N4N0_CANLF	UniProtKB/TrEMBL
	A0A8I3N6V8_CANLF	UniProtKB/TrEMBL
	A0A8I3RVM2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0T1Y0_CANLF	UniProtKB/TrEMBL
	A0A8P0TQ12_CANLF	UniProtKB/TrEMBL
	Q0QEK9_CANLF	UniProtKB/TrEMBL
VGNC ID	VGNC:49800	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

RGD Manual Annotations

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