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Gene: TCF21 (transcription factor 21) Canis lupus familiaris

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Symbol:

TCF21

Name:

transcription factor 21

RGD ID:

12311846

Description:

ENCODES a protein that exhibits bHLH transcription factor binding (inferred); DNA binding (inferred); DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); INVOLVED IN animal organ morphogenesis (ortholog); branching involved in ureteric bud morphogenesis (ortholog); bronchiole development (ortholog); ASSOCIATED WITH coronary artery disease (ortholog); Paroxysmal Atrial Fibrillation (ortholog); ventricular septal defect (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred); transcription regulator complex (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

POD1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TCF21 (transcription factor 21)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Tcf21 (transcription factor 21)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Tcf21 (transcription factor 21)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tcf21 (transcription factor 21)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TCF21 (transcription factor 21)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tcf21 (transcription factor 21)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TCF21 (transcription factor 21)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TCF21 (transcription factor 21)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tcf21 (transcription factor 21)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	26,856,281 - 26,859,654 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	26,856,587 - 26,859,647 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	27,737,867 - 27,741,067 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	27,014,669 - 27,017,873 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	27,015,081 - 27,017,857 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	26,898,755 - 26,901,959 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	26,778,392 - 26,781,591 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	27,087,943 - 27,091,143 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

coronary artery disease (ISO)

Paroxysmal Atrial Fibrillation (ISO)

ventricular septal defect (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

animal organ morphogenesis (IEA,ISO)

branching involved in ureteric bud morphogenesis (IEA,ISO)

branchiomeric skeletal muscle development (IEA)

bronchiole development (IEA,ISO)

developmental process (IBA)

diaphragm development (IEA)

embryonic digestive tract morphogenesis (ISO)

epithelial cell differentiation (IEA,ISO)

gland development (ISO)

glomerulus development (IEA,ISO)

kidney development (IEA,ISO)

lung alveolus development (IEA,ISO)

lung morphogenesis (IEA,ISO)

lung vasculature development (IEA,ISO)

metanephric glomerular capillary formation (IEA)

metanephric mesenchymal cell differentiation (IEA)

morphogenesis of a branching structure (IEA,ISO)

negative regulation of androgen receptor signaling pathway (IEA)

negative regulation of transcription by RNA polymerase II (IEA)

positive regulation of transcription by RNA polymerase II (IEA)

regulation of transcription by RNA polymerase II (IBA)

reproductive structure development (IEA,ISO)

respiratory system development (IEA,ISO)

roof of mouth development (IEA)

Sertoli cell differentiation (ISO)

sex determination (IEA,ISO)

sex differentiation (IEA,ISO)

spleen development (IEA)

ureteric bud development (IEA,ISO)

vasculature development (IEA,ISO)

Cellular Component

nucleoplasm (IEA)

nucleus (IEA)

transcription regulator complex (IEA)

Molecular Function

bHLH transcription factor binding (IEA)

DNA binding (IEA)

DNA-binding transcription activator activity, RNA polymerase II-specific (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

DNA-binding transcription repressor activity, RNA polymerase II-specific (IEA)

E-box binding (IEA)

histone deacetylase binding (IEA)

nuclear androgen receptor binding (IEA)

protein binding (ISO)

protein dimerization activity (IEA)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (IBA)

sequence-specific double-stranded DNA binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:25403511	PMID:30032202

Genomics

Comparative Map Data

TCF21
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	26,856,281 - 26,859,654 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	26,856,587 - 26,859,647 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	27,737,867 - 27,741,067 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	27,014,669 - 27,017,873 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	27,015,081 - 27,017,857 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	26,898,755 - 26,901,959 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	26,778,392 - 26,781,591 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	27,087,943 - 27,091,143 (+)	NCBI		UU_Cfam_GSD_1.0

TCF21
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	133,889,113 - 133,895,537 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	133,889,113 - 133,895,553 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	134,210,251 - 134,216,675 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	134,251,970 - 134,258,368 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	134,251,969 - 134,258,368	NCBI
Celera	6	134,951,327 - 134,957,746 (+)	NCBI		Celera
Cytogenetic Map	6	q23.2	NCBI
HuRef	6	131,779,608 - 131,786,028 (+)	NCBI		HuRef
CHM1_1	6	134,473,121 - 134,479,537 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	135,077,847 - 135,084,271 (+)	NCBI		T2T-CHM13v2.0

Tcf21
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	22,693,162 - 22,696,042 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	22,693,180 - 22,696,073 (-)	Ensembl		GRCm39 Ensembl
GRCm38	10	22,817,263 - 22,820,143 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	22,817,281 - 22,820,174 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	22,537,069 - 22,539,934 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	22,506,679 - 22,509,544 (-)	NCBI		MGSCv36	mm8
Celera	10	23,754,029 - 23,756,913 (-)	NCBI		Celera
Cytogenetic Map	10	A3	NCBI
cM Map	10	10.33	NCBI

Tcf21
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	24,520,499 - 24,523,358 (+)	NCBI		GRCr8
mRatBN7.2	1	22,701,353 - 22,704,212 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	22,701,353 - 22,704,202 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	22,480,305 - 22,483,164 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	28,480,090 - 28,482,949 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	22,677,349 - 22,680,208 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	23,906,717 - 23,909,576 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	23,906,717 - 23,909,566 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	25,370,183 - 25,373,042 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	23,211,054 - 23,213,913 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	23,214,112 - 23,214,625 (+)	NCBI
Celera	1	21,429,543 - 21,432,402 (+)	NCBI		Celera
Cytogenetic Map	1	p12	NCBI

Tcf21
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955439	2,617,492 - 2,620,644 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955439	2,617,562 - 2,620,613 (-)	NCBI	ChiLan1.0	ChiLan1.0

TCF21
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	153,862,783 - 153,865,954 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	151,768,855 - 151,775,684 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	131,656,582 - 131,662,983 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	135,754,896 - 135,761,294 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	135,754,896 - 135,761,294 (+)	Ensembl	panpan1.1		panPan2

Tcf21
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	121,954,674 - 121,957,679 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936560	1,733,903 - 1,736,890 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936560	1,733,903 - 1,736,895 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TCF21
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	29,975,280 - 29,978,255 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	29,975,280 - 29,978,273 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	33,477,834 - 33,478,622 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TCF21
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	39,607,179 - 39,610,336 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	39,607,182 - 39,610,388 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	11,792,052 - 11,795,253 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tcf21
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624942	890,365 - 893,811 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624942	890,465 - 893,679 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in TCF21
40 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	32	21	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_038465439	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038526056	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038590350	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038654174	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_541110	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000354	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000000328 ⟹ ENSCAFP00000000296

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	1	26,856,587 - 26,859,647 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845008802 ⟹ ENSCAFP00845006939

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	1	27,015,081 - 27,017,857 (+)	Ensembl

RefSeq Acc Id:

XM_038465439 ⟹ XP_038321367

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	1	26,898,755 - 26,901,959 (+)	NCBI

RefSeq Acc Id:

XM_038526056 ⟹ XP_038381984

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	1	27,087,943 - 27,091,143 (+)	NCBI

RefSeq Acc Id:

XM_038590350 ⟹ XP_038446278

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	1	26,778,392 - 26,781,591 (+)	NCBI

RefSeq Acc Id:

XM_038654174 ⟹ XP_038510102

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	1	27,014,669 - 27,017,873 (+)	NCBI

RefSeq Acc Id:

XM_541110 ⟹ XP_541110

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	1	26,856,281 - 26,859,654 (+)	NCBI
Dog10K_Boxer_Tasha	1	27,737,867 - 27,741,067 (+)	NCBI

Sequence:

show sequence

AAGAGCAAAAGGATCCGGTCATTTCTCTGAAGCCCTAAAAAACCAGCAGCTATGACCTCTTAAG
AGGAAAAGGGGCCTTAGGAGATGGCCCTGGAGAGGGGCTGTGGGTGGGGCGCGCTCTTCCTTGG
CTAAAGTGGAAGAAGCAACTGGTGCTCGGAGTTGCAGTTGAGTTGATTTACATTACAAGTTGGA
AATCGGGGTCTGTGCGTAAGAGTTTCCCTCCGGTTGTGAAAGGGGTCTCAGAGTCCGCTGGGGC
CTAGCAGGCCCCTCCCCTGGGCTACAAGGGTCCGCCTCTCTATTCCCCAGATAAATTCCTAGTG
TCCACCAAATTCCTCAGCGCTCTCTCACACTCCTCTGCGGCCGCGACTCCGGAGGTGGGGAAAC
AGAGCCGAGTTCCTCCCCGAAGAAGCCCTCTCGGTTCCTTCTCACAACCTCGCGAAGGGGAAAG
GGCTGTGAGGCTCAACCAGACCCCCGCTCCAGTCCCCAACCGGCGGTGGCCGCTCCGCACCCCA
GTCCCGGGGGCCCGCTGGCCAGGGGCTCGCTGACGCGCGCGCTCTCCCTTTCGCCTCTCTCTCC
CTCATTCTCGCCCCCAAACATGTCCACTGGCTCCCTCAGCGATGTGGAGGATCTTCAAGAGGTG
GAGATGCTGGACTGTGACGGGCTGAAAATGGACTCGAGCAAAGAGTTTGTGACTTCCAACGAGA
GCACCGAGGAGAGCTCCAACTGCGAGGCGGGGTCACCCCAGAAGGGCCGCGGAGGCCTGGGCAA
GAGGAGGAAAGCGCCCACCAAGAAGAGCCCCTTGAGCGGCGTCAGCCAGGAGGGGAAGCAGGTC
CAGCGCAACGCGGCCAACGCGCGCGAGCGGGCCCGGATGCGGGTGCTGAGCAAGGCCTTCTCCA
GGCTCAAGACCACCCTGCCCTGGGTGCCCCCGGACACCAAGCTCTCCAAGCTGGACACGCTCCG
GCTGGCGTCCAGCTACATCGCGCACTTGAGGCAGATCCTGGCTAACGACAAGTACGAGAACGGT
TACATTCACCCGGTCAACCTGACGTGGCCCTTTATGGTGGCCGGGAAACCCGAGAGTGACCTGA
AAGAAGTGGTGACCGCGAGCCGCTTATGTGGAACCACAGCGTCCTGACCTTGGAGGTGCGAGTC
TGGGAAAGGCGCGCTCCCGGGGGGGAGCGGGCCCCGCCCGGGAAGGCGACCCCTGCCCTCCCTT
GCTCTCTGTCTCTGCTTCCCCCTCGCAACGTTCCTCTCCCTGCCCCCCTCTCCCCCACCCCCCC
GCGAGAACACTTTACAGCGACGAGGAGATTCGTTTCCAAACCTGAGGAGATCAATTGTACTTAC
AAAGATTCCCATCTATTTAACTTTATTAACTTCTGCGGTGAATGACTCTGCGAGCCTTGCTGGT
CCAAGTGCAATATGTAATTATAAATATATAAATAGATAATAAGAGCCTATCAATGTGTATCTTT
TGTACCATATGTTGTAAAATGTAGTTCATAGAATAACTGACTTTGATAGTCACATTTATAAAGT
AATTCACTTAAAGATATATTTTTTTCAAACAAGTTTTGCTACTTTCGAAAATAAATCTTTCTTT
ATATTGCTAAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_038321367	(Get FASTA)	NCBI Sequence Viewer
	XP_038381984	(Get FASTA)	NCBI Sequence Viewer
	XP_038446278	(Get FASTA)	NCBI Sequence Viewer
	XP_038510102	(Get FASTA)	NCBI Sequence Viewer
	XP_541110	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000000296.3
	ENSCAFP00030008375.1
	ENSCAFP00040000069.1
	ENSCAFP00845006939
	ENSCAFP00845006939.1

RefSeq Acc Id:	XP_541110 ⟸ XM_541110
- UniProtKB:	A0A8C0M9I4 (UniProtKB/TrEMBL), A0A8C0LBT7 (UniProtKB/TrEMBL), A0A8I3NA71 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSTGSLSDVEDLQEVEMLDCDGLKMDSSKEFVTSNESTEESSNCEAGSPQKGRGGLGKRRKAPT KKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYI AHLRQILANDKYENGYIHPVNLTWPFMVAGKPESDLKEVVTASRLCGTTAS hide sequence

Ensembl Acc Id:

ENSCAFP00000000296 ⟸ ENSCAFT00000000328

RefSeq Acc Id:

XP_038321367 ⟸ XM_038465439

RefSeq Acc Id:

XP_038446278 ⟸ XM_038590350

RefSeq Acc Id:	XP_038510102 ⟸ XM_038654174
- UniProtKB:	A0A8C0M9I4 (UniProtKB/TrEMBL), A0A8C0LBT7 (UniProtKB/TrEMBL), A0A8I3NA71 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038381984 ⟸ XM_038526056
- UniProtKB:	A0A8C0LBT7 (UniProtKB/TrEMBL), A0A8C0M9I4 (UniProtKB/TrEMBL), A0A8I3NA71 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845006939 ⟸ ENSCAFT00845008802

Protein Domains

bHLH

Promoters

RGD ID:

13681971

Promoter ID:

EPDNEW_C37

Type:

single initiation site

Name:

TCF21_1

Description:

transcription factor 21

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	1	26,856,616 - 26,856,676	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000000205	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030005245	UniProtKB/TrEMBL
	ENSCAFG00040000055	UniProtKB/TrEMBL
	ENSCAFG00845004920	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000000328.4	UniProtKB/TrEMBL
	ENSCAFT00030009582.1	UniProtKB/TrEMBL
	ENSCAFT00040000092.1	UniProtKB/TrEMBL
	ENSCAFT00845008802	ENTREZGENE
	ENSCAFT00845008802.1	UniProtKB/TrEMBL
Gene3D-CATH	4.10.280.10	UniProtKB/TrEMBL
InterPro	bHLH_dom	UniProtKB/TrEMBL
	E-box_TF_Regulators	UniProtKB/TrEMBL
	HLH_DNA-bd_sf	UniProtKB/TrEMBL
KEGG Report	cfa:483993	UniProtKB/TrEMBL
NCBI Gene	TCF21	ENTREZGENE
PANTHER	BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST	UniProtKB/TrEMBL
	TRANSCRIPTION FACTOR 21	UniProtKB/TrEMBL
Pfam	HLH	UniProtKB/TrEMBL
PROSITE	BHLH	UniProtKB/TrEMBL
SMART	HLH	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47459	UniProtKB/TrEMBL
UniProt	A0A8C0LBT7	ENTREZGENE
	A0A8C0M9I4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3NA71	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:47193	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD