STMND1 (stathmin domain containing 1)

Gene: STMND1 (stathmin domain containing 1) Canis lupus familiaris

Analyze

Symbol:

STMND1

Name:

stathmin domain containing 1

RGD ID:

12311572

Description:

ENCODES a protein that exhibits tubulin binding (inferred); INVOLVED IN microtubule depolymerization (inferred); neuron projection development (inferred); regulation of microtubule polymerization or depolymerization (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (inferred); neuron projection (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

stathmin domain-containing protein 1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	35	16,130,949 - 16,154,363 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	35	16,130,727 - 16,154,335 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	35	16,081,020 - 16,104,402 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	35	16,234,486 - 16,258,055 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	35	16,051,667 - 16,075,011 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	35	16,104,040 - 16,127,624 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	35	17,437,971 - 17,461,541 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

microtubule depolymerization (IEA)

neuron projection development (IEA)

regulation of microtubule polymerization or depolymerization (IEA)

Cellular Component

cytoplasm (IEA)

neuron projection (IEA)

Molecular Function

tubulin binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

STMND1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	35	16,130,949 - 16,154,363 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	35	16,130,727 - 16,154,335 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	35	16,081,020 - 16,104,402 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	35	16,234,486 - 16,258,055 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	35	16,051,667 - 16,075,011 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	35	16,104,040 - 16,127,624 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	35	17,437,971 - 17,461,541 (+)	NCBI		UU_Cfam_GSD_1.0

STMND1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	17,102,050 - 17,131,378 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	17,102,050 - 17,131,378 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	17,102,281 - 17,131,609 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	17,236,148 - 17,239,582 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	6	18,340,377 - 18,369,493 (+)	NCBI		Celera
Cytogenetic Map	6	p22.3	NCBI
HuRef	6	17,048,652 - 17,077,766 (+)	NCBI		HuRef
CHM1_1	6	17,105,111 - 17,134,222 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	16,973,679 - 17,003,005 (+)	NCBI		T2T-CHM13v2.0

Stmnd1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	46,427,197 - 46,453,591 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	46,427,197 - 46,453,591 (+)	Ensembl		GRCm39 Ensembl
GRCm38	13	46,273,721 - 46,300,115 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	46,273,721 - 46,300,115 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	46,369,090 - 46,395,484 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	46,284,693 - 46,311,087 (+)	NCBI		MGSCv36	mm8
Celera	13	47,360,544 - 47,379,614 (+)	NCBI		Celera
Cytogenetic Map	13	A5	NCBI
cM Map	13	23.22	NCBI

Stmnd1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	18,600,537 - 18,626,807 (-)	NCBI		GRCr8
mRatBN7.2	17	18,393,312 - 18,420,655 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	18,394,346 - 18,437,412 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	17	18,801,170 - 18,829,170 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	18,802,399 - 18,828,929 (-)	NCBI	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	17	18,802,399 - 18,828,929 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	19,146,788 - 19,153,137 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	24,338,611 - 24,365,490 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	17	18,098,959 - 18,126,088 (-)	NCBI		Celera
Cytogenetic Map	17	p14	NCBI

Stmnd1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955483	8,839,117 - 8,860,560 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955483	8,835,956 - 8,860,916 (-)	NCBI	ChiLan1.0	ChiLan1.0

STMND1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	31,771,652 - 31,801,077 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	27,756,733 - 27,786,163 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	16,960,240 - 16,989,669 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	17,320,860 - 17,350,128 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	17,320,860 - 17,350,126 (+)	Ensembl	panpan1.1		panPan2

Stmnd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	8,561,594 - 8,582,919 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936552	3,148,262 - 3,169,145 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936552	3,148,323 - 3,169,145 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

STMND1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	13,014,741 - 13,039,651 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	13,013,028 - 13,040,145 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	13,860,215 - 13,887,074 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

STMND1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	55,013,798 - 55,042,742 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666044	17,179,298 - 17,208,110 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Stmnd1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624756	9,403,759 - 9,426,635 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624756	9,400,334 - 9,426,660 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in STMND1
273 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium			3						3		4
Low	5		8		6				9	8	5
Below cutoff		5	11	6		6	6	6			1	6

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005640059	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014110662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014110663	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014110664	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038446436	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038446437	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038446438	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038446439	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038520579	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038520580	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038520581	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038520582	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038584228	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038584229	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038584230	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038584231	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038648637	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038648638	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038648639	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038648640	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000349	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000081	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000369	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000015805 ⟹ ENSCAFP00000014630

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	35	16,130,727 - 16,154,335 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00000060629 ⟹ ENSCAFP00000064304

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	35	16,133,055 - 16,154,335 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00000086138 ⟹ ENSCAFP00000064047

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	35	16,132,260 - 16,154,335 (+)	Ensembl

RefSeq Acc Id:

XM_005640059 ⟹ XP_005640116

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	35	16,130,949 - 16,154,363 (+)	NCBI
Dog10K_Boxer_Tasha	35	16,081,020 - 16,104,402 (+)	NCBI

Sequence:

show sequence

CGGATCTCCCAGGTTCCAGTCACTCAAGTCCCGCCGCCGCGCAGGGCCGGGGCCGCGTCTGGCG
GTTTATTGTGGCAACAGATCCCGGCAACTGCCCGGCTGCCGAGCGCCTCCAGCCCGGGCTCCGG
GTGCGGGAGAGTGGGGCATGAAGGGATGGGTTGGTCCCGGCAGAAATGAGCTCCAGGATGTCTC
CCCATCCTCACCACCATCAGTATTCCACGAATGAAGCTGGGAACCCACAATGGTATACATTGGA
GAGGGGTCACCCAAAGATCCTTCCTCCACTGCCCACCCCGACCTGTGCTCCAGGCTTCTGCATG
ACCTTGAGAGCAATCGTTCTAAGGCTGACATCCCCGTGACTCATTCTGGGGAGGGCTGCAGGCC
CCAAGATGAAGCTGCATTTCCCAAGGATTCAAGGAGCAGCCCCAACGGCCTGGAAAACCTGGGA
AGCTTACCTGGAACCATACCAGAAAGTTCCCCATCACTTAGTGAAAGAAACGGAAGAATAAATT
CAGACCTAGTGACCAGTGGATTAATCCATAAACCCCAACCCCTAGAAAGCCGAGAGCGACAAAA
GTCATCAGACATTCTGGAGGAATTAATTGTTCAAGGAATAATACAAAGCCACAGCAAAGTATTT
AGAAATGGAGAATCCTATGATGTCATGGTAAGCACGACGATGCCGCTGAGAAAGCCACCAGCCA
GGCTGAAAAAGCTTACGATCAAAAAGGAAGCAAAGGCTTTCACGATGAACGATCTGGAAGAGAA
GATGCGGGCGGTGGAGAGCCGCAGGAAGACTAAAGAAGAAGACATACGAAAAAGGCTAAGGAGC
GACCGACTTTTGTCCCCGGCCAATCATTCGGATGCAGCCCAGAGGGGTAGGGCTGAGGTTCCCT
TTGGCCAAGGACTGGATGCTGTGGGTTCGGTGGTGGTTGAGCCTCCCCAACCACAGGGGGGAAG
GCCCTTGAAGAGGAAGAAAAGCAATACATCCTCAAGTGAAAGAAACTTTGGTTATGAAGGGTTT
GGGGTGGTGGAGTCAGACTTGTCCTACAACCAAGTGGATGATGTGTTTGAATAGGTCACCTTGC
TGGAATCTCATGAAGCAGCACCCATTGTCCCCACTTGTGACACTCTCGTCTGTCTTGTGCTTTT
CTGAAGGCCTGAACTCACCCCACTGGGTTGCCCCGGGGGTGAGGGGTGAGGAAGGATTGTATGA
GCTGCCCGAGCTGAACTCAGCTGAGGGAATTCAATGCCGATGCTAGCAAAAGGGGAAAAAAAAA
AAAAAAAAAAAAAAAAACAAGAT

hide sequence

RefSeq Acc Id:

XM_014110662 ⟹ XP_013966137

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	35	16,131,629 - 16,154,363 (+)	NCBI
Dog10K_Boxer_Tasha	35	16,081,721 - 16,104,402 (+)	NCBI

Sequence:

show sequence

CCTTTTGCCAGGCTTGGGGCGGGGAGCGGGGCTGGAGTGGCCCGCAGCTGGGTGCCCGTCAGTG
GGTGGGCGGGCTGGGGGCAACTGCCCCCTTCCCCGAGACTCCTGCGGCCAGAGGCCCAGCTTTG
AGAGCCTTTTGTGTTTCAAGAGCCTGAGAAGGTGATCACACCTCGAGCAGAGGCAGGGGGAGCA
GGTGTGTTCTGTACGGAGCTGGGGCTGCTGAGCGGAGCTCCTGGGAGCCGTCACACTCCGTTGG
CTTCCGGAAAGGGGGCCCTTTGAGGACTACTTGGCGCTCAAAGAGATTTTAGAGGCCTTCGTCT
GGCTGTGCCCTCTCGCTTCCCCCTGAGGACCCAGAGAGGTGGACGTCTTGCCTGAGGCTGCCCT
GCTTATTTGGGGGCAGAGCCGGAGATAGAATCTGATTTTCAAGACTCTCATTCCAATGCTCTCT
CTCTCTTCTCTCTTTCTCTCTCCCTCTCGGTTGCAAACCCCATGATTCTTCTGGAGACACAAAG
GGGAATTTTTTCCAGAGTGGGGCATGAAGGGATGGGTTGGTCCCGGCAGAAATGAGCTCCAGGA
TGTCTCCCCATCCTCACCACCATCAGTATTCCACGAATGAAGCTGGGAACCCACAATGGTATAC
ATTGGAGAGGGGTCACCCAAAGATCCTTCCTCCACTGCCCACCCCGACCTGTGCTCCAGGCTTC
TGCATGACCTTGAGAGCAATCGTTCTAAGGCTGACATCCCCGTGACTCATTCTGGGGAGGGCTG
CAGGCCCCAAGATGAAGCTGCATTTCCCAAGGATTCAAGGAGCAGCCCCAACGGCCTGGAAAAC
CTGGGAAGCTTACCTGGAACCATACCAGAAAGTTCCCCATCACTTAGTGAAAGAAACGGAAGAA
TAAATTCAGACCTAGTGACCAGTGGATTAATCCATAAACCCCAACCCCTAGAAAGCCGAGAGCG
ACAAAAGTCATCAGACATTCTGGAGGAATTAATTGTTCAAGGAATAATACAAAGCCACAGCAAA
GTATTTAGAAATGGAGAATCCTATGATGTCATGGTAAGCACGACGATGCCGCTGAGAAAGCCAC
CAGCCAGGCTGAAAAAGCTTACGATCAAAAAGGAAGCAAAGGCTTTCACGATGAACGATCTGGA
AGAGAAGATGCGGGCGGTGGAGAGCCGCAGGAAGACTAAAGAAGAAGACATACGAAAAAGGCTA
AGGAGCGACCGACTTTTGTCCCCGGCCAATCATTCGGATGCAGCCCAGAGGGGTAGGGCTGAGG
TTCCCTTTGGCCAAGGACTGGATGCTGTGGGTTCGGTGGTGGTTGAGCCTCCCCAACCACAGGG
GGGAAGGCCCTTGAAGAGGAAGAAAAGCAATACATCCTCAAGTGAAAGAAACTTTGGTTATGAA
GGGTTTGGGGTGGTGGAGTCAGACTTGTCCTACAACCAAGTGGATGATGTGTTTGAATAGGTCA
CCTTGCTGGAATCTCATGAAGCAGCACCCATTGTCCCCACTTGTGACACTCTCGTCTGTCTTGT
GCTTTTCTGAAGGCCTGAACTCACCCCACTGGGTTGCCCCGGGGGTGAGGGGTGAGGAAGGATT
GTATGAGCTGCCCGAGCTGAACTCAGCTGAGGGAATTCAATGCCGATGCTAGCAAAAGGGGAAA
AAAAAAAAAAAAAAAAAAAAAAACAAGAT

hide sequence

RefSeq Acc Id:

XM_014110663 ⟹ XP_013966138

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	35	16,131,628 - 16,154,363 (+)	NCBI
Dog10K_Boxer_Tasha	35	16,081,721 - 16,104,402 (+)	NCBI

Sequence:

show sequence

GCCTTTTGCCAGGCTTGGGGCGGGGAGCGGGGCTGGAGTGGCCCGCAGCTGGGTGCCCGTCAGT
GGGTGGGCGGGCTGGGGGCAACTGCCCCCTTCCCCGAGACTCCTGCGGCCAGAGGCCCAGCTTT
GAGAGCCTTTTGTGTTTCAAGAGCCTGAGAAGGTGATCACACCTCGAGCAGAGGCAGGGGGAGC
AGGTGTGTTCTGTACGGAGCTGGGGCTGCTGAGCGGAGCTCCTGGGAGCCGTCACACTCCGTTG
GCTTCCGGAAAGGGGGCCCTTTGAGGACTACTTGGCGCTCAAAGAGATTTTAGAGGCCTTCGTC
TGGCTGTGCCCTCTCGCTTCCCCCTGAGGACCCAGAGAGGTGGACGTCTTGCCTGAGGCTGCCC
TGCTTATTTGGGGGCAGAGCCGGAGATAGAATCTGATTTTCAAGACTCTCATTCCAATGCTCTC
TCTCTCTTCTCTCTTTCTCTCTCCCTCTCGGTTGCAAACCCCATGATTCTTCTGGAGACACAAA
GGGGAATTTTTTCCAGAGTGGGGCATGAAGGGATGGGTTGGTCCCGGCAGAAATGAGCTCCAGG
ATGTCTCCCCATCCTCACCACCATCAGTATTCCACGAATGAAGCTGGGAACCCACAATGGTATA
CATTGGAGAGGGGTCACCCAAAGGCTGACATCCCCGTGACTCATTCTGGGGAGGGCTGCAGGCC
CCAAGATGAAGCTGCATTTCCCAAGGATTCAAGGAGCAGCCCCAACGGCCTGGAAAACCTGGGA
AGCTTACCTGGAACCATACCAGAAAGTTCCCCATCACTTAGTGAAAGAAACGGAAGAATAAATT
CAGACCTAGTGACCAGTGGATTAATCCATAAACCCCAACCCCTAGAAAGCCGAGAGCGACAAAA
GTCATCAGACATTCTGGAGGAATTAATTGTTCAAGGAATAATACAAAGCCACAGCAAAGTATTT
AGAAATGGAGAATCCTATGATGTCATGGTAAGCACGACGATGCCGCTGAGAAAGCCACCAGCCA
GGCTGAAAAAGCTTACGATCAAAAAGGAAGCAAAGGCTTTCACGATGAACGATCTGGAAGAGAA
GATGCGGGCGGTGGAGAGCCGCAGGAAGACTAAAGAAGAAGACATACGAAAAAGGCTAAGGAGC
GACCGACTTTTGTCCCCGGCCAATCATTCGGATGCAGCCCAGAGGGGTAGGGCTGAGGTTCCCT
TTGGCCAAGGACTGGATGCTGTGGGTTCGGTGGTGGTTGAGCCTCCCCAACCACAGGGGGGAAG
GCCCTTGAAGAGGAAGAAAAGCAATACATCCTCAAGTGAAAGAAACTTTGGTTATGAAGGGTTT
GGGGTGGTGGAGTCAGACTTGTCCTACAACCAAGTGGATGATGTGTTTGAATAGGTCACCTTGC
TGGAATCTCATGAAGCAGCACCCATTGTCCCCACTTGTGACACTCTCGTCTGTCTTGTGCTTTT
CTGAAGGCCTGAACTCACCCCACTGGGTTGCCCCGGGGGTGAGGGGTGAGGAAGGATTGTATGA
GCTGCCCGAGCTGAACTCAGCTGAGGGAATTCAATGCCGATGCTAGCAAAAGGGGAAAAAAAAA
AAAAAAAAAAAAAAAAACAAGAT

hide sequence

RefSeq Acc Id:

XM_014110664 ⟹ XP_013966139

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	35	16,131,465 - 16,154,363 (+)	NCBI
Dog10K_Boxer_Tasha	35	16,081,482 - 16,104,402 (+)	NCBI

Sequence:

show sequence

GCAGGGGCGCAGCGGCGCAGCAGCGGGCACCCCGGGAGGGCGAGCATGGGCTGCGGACCTTCCC
AGGCTGCGGAGGACCAGAGACGCGTGCCCGCGCCCAGGAAGGGCTGGGAAGAGGGATTTAAGGC
TGACATCCCCGTGACTCATTCTGGGGAGGGCTGCAGGCCCCAAGATGAAGCTGCATTTCCCAAG
GATTCAAGGAGCAGCCCCAACGGCCTGGAAAACCTGGGAAGCTTACCTGGAACCATACCAGAAA
GTTCCCCATCACTTAGTGAAAGAAACGGAAGAATAAATTCAGACCTAGTGACCAGTGGATTAAT
CCATAAACCCCAACCCCTAGAAAGCCGAGAGCGACAAAAGTCATCAGACATTCTGGAGGAATTA
ATTGTTCAAGGAATAATACAAAGCCACAGCAAAGTATTTAGAAATGGAGAATCCTATGATGTCA
TGGTAAGCACGACGATGCCGCTGAGAAAGCCACCAGCCAGGCTGAAAAAGCTTACGATCAAAAA
GGAAGCAAAGGCTTTCACGATGAACGATCTGGAAGAGAAGATGCGGGCGGTGGAGAGCCGCAGG
AAGACTAAAGAAGAAGACATACGAAAAAGGCTAAGGAGCGACCGACTTTTGTCCCCGGCCAATC
ATTCGGATGCAGCCCAGAGGGGTAGGGCTGAGGTTCCCTTTGGCCAAGGACTGGATGCTGTGGG
TTCGGTGGTGGTTGAGCCTCCCCAACCACAGGGGGGAAGGCCCTTGAAGAGGAAGAAAAGCAAT
ACATCCTCAAGTGAAAGAAACTTTGGTTATGAAGGGTTTGGGGTGGTGGAGTCAGACTTGTCCT
ACAACCAAGTGGATGATGTGTTTGAATAGGTCACCTTGCTGGAATCTCATGAAGCAGCACCCAT
TGTCCCCACTTGTGACACTCTCGTCTGTCTTGTGCTTTTCTGAAGGCCTGAACTCACCCCACTG
GGTTGCCCCGGGGGTGAGGGGTGAGGAAGGATTGTATGAGCTGCCCGAGCTGAACTCAGCTGAG
GGAATTCAATGCCGATGCTAGCAAAAGGGGAAAAAAAAAAAAAAAAAAAAAAAAAACAAGAT

hide sequence

RefSeq Acc Id:

XM_038446436 ⟹ XP_038302364

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	35	16,235,193 - 16,258,055 (+)	NCBI

RefSeq Acc Id:

XM_038446437 ⟹ XP_038302365

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	35	16,234,486 - 16,258,055 (+)	NCBI

RefSeq Acc Id:

XM_038446438 ⟹ XP_038302366

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	35	16,235,193 - 16,258,055 (+)	NCBI

RefSeq Acc Id:

XM_038446439 ⟹ XP_038302367

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	35	16,234,954 - 16,258,055 (+)	NCBI

RefSeq Acc Id:

XM_038520579 ⟹ XP_038376507

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	35	16,052,368 - 16,075,011 (+)	NCBI

RefSeq Acc Id:

XM_038520580 ⟹ XP_038376508

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	35	16,051,667 - 16,075,011 (+)	NCBI

RefSeq Acc Id:

XM_038520581 ⟹ XP_038376509

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	35	16,052,368 - 16,075,011 (+)	NCBI

RefSeq Acc Id:

XM_038520582 ⟹ XP_038376510

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	35	16,052,129 - 16,075,011 (+)	NCBI

RefSeq Acc Id:

XM_038584228 ⟹ XP_038440156

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	35	17,438,654 - 17,461,541 (+)	NCBI

RefSeq Acc Id:

XM_038584229 ⟹ XP_038440157

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	35	17,437,971 - 17,461,541 (+)	NCBI

RefSeq Acc Id:

XM_038584230 ⟹ XP_038440158

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	35	17,438,654 - 17,461,541 (+)	NCBI

RefSeq Acc Id:

XM_038584231 ⟹ XP_038440159

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	35	17,438,417 - 17,461,541 (+)	NCBI

RefSeq Acc Id:

XM_038648637 ⟹ XP_038504565

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	35	16,104,748 - 16,127,624 (+)	NCBI

RefSeq Acc Id:

XM_038648638 ⟹ XP_038504566

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	35	16,104,040 - 16,127,624 (+)	NCBI

RefSeq Acc Id:

XM_038648639 ⟹ XP_038504567

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	35	16,104,748 - 16,127,624 (+)	NCBI

RefSeq Acc Id:

XM_038648640 ⟹ XP_038504568

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	35	16,104,509 - 16,127,624 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005640116	(Get FASTA)	NCBI Sequence Viewer
	XP_013966137	(Get FASTA)	NCBI Sequence Viewer
	XP_013966138	(Get FASTA)	NCBI Sequence Viewer
	XP_013966139	(Get FASTA)	NCBI Sequence Viewer
	XP_038302364	(Get FASTA)	NCBI Sequence Viewer
	XP_038302365	(Get FASTA)	NCBI Sequence Viewer
	XP_038302366	(Get FASTA)	NCBI Sequence Viewer
	XP_038302367	(Get FASTA)	NCBI Sequence Viewer
	XP_038376507	(Get FASTA)	NCBI Sequence Viewer
	XP_038376508	(Get FASTA)	NCBI Sequence Viewer
	XP_038376509	(Get FASTA)	NCBI Sequence Viewer
	XP_038376510	(Get FASTA)	NCBI Sequence Viewer
	XP_038440156	(Get FASTA)	NCBI Sequence Viewer
	XP_038440157	(Get FASTA)	NCBI Sequence Viewer
	XP_038440158	(Get FASTA)	NCBI Sequence Viewer
	XP_038440159	(Get FASTA)	NCBI Sequence Viewer
	XP_038504565	(Get FASTA)	NCBI Sequence Viewer
	XP_038504566	(Get FASTA)	NCBI Sequence Viewer
	XP_038504567	(Get FASTA)	NCBI Sequence Viewer
	XP_038504568	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000064047.2
	ENSCAFP00845034192.1

RefSeq Acc Id:

XP_005640116 ⟸ XM_005640059

- Peptide Label:

isoform X1

- Sequence:

show sequence

MVYIGEGSPKDPSSTAHPDLCSRLLHDLESNRSKADIPVTHSGEGCRPQDEAAFPKDSRSSPNG
LENLGSLPGTIPESSPSLSERNGRINSDLVTSGLIHKPQPLESRERQKSSDILEELIVQGIIQS
HSKVFRNGESYDVMVSTTMPLRKPPARLKKLTIKKEAKAFTMNDLEEKMRAVESRRKTKEEDIR
KRLRSDRLLSPANHSDAAQRGRAEVPFGQGLDAVGSVVVEPPQPQGGRPLKRKKSNTSSSERNF
GYEGFGVVESDLSYNQVDDVFE

hide sequence

RefSeq Acc Id:	XP_013966139 ⟸ XM_014110664
- Peptide Label:	isoform X3
- UniProtKB:	E2RM04 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGCGPSQAAEDQRRVPAPRKGWEEGFKADIPVTHSGEGCRPQDEAAFPKDSRSSPNGLENLGSL PGTIPESSPSLSERNGRINSDLVTSGLIHKPQPLESRERQKSSDILEELIVQGIIQSHSKVFRN GESYDVMVSTTMPLRKPPARLKKLTIKKEAKAFTMNDLEEKMRAVESRRKTKEEDIRKRLRSDR LLSPANHSDAAQRGRAEVPFGQGLDAVGSVVVEPPQPQGGRPLKRKKSNTSSSERNFGYEGFGV VESDLSYNQVDDVFE hide sequence

RefSeq Acc Id:

XP_013966138 ⟸ XM_014110663

- Peptide Label:

isoform X2

- Sequence:

show sequence

MSSRMSPHPHHHQYSTNEAGNPQWYTLERGHPKADIPVTHSGEGCRPQDEAAFPKDSRSSPNGL
ENLGSLPGTIPESSPSLSERNGRINSDLVTSGLIHKPQPLESRERQKSSDILEELIVQGIIQSH
SKVFRNGESYDVMVSTTMPLRKPPARLKKLTIKKEAKAFTMNDLEEKMRAVESRRKTKEEDIRK
RLRSDRLLSPANHSDAAQRGRAEVPFGQGLDAVGSVVVEPPQPQGGRPLKRKKSNTSSSERNFG
YEGFGVVESDLSYNQVDDVFE

hide sequence

RefSeq Acc Id:

XP_013966137 ⟸ XM_014110662

- Peptide Label:

isoform X1

- Sequence:

show sequence

MVYIGEGSPKDPSSTAHPDLCSRLLHDLESNRSKADIPVTHSGEGCRPQDEAAFPKDSRSSPNG
LENLGSLPGTIPESSPSLSERNGRINSDLVTSGLIHKPQPLESRERQKSSDILEELIVQGIIQS
HSKVFRNGESYDVMVSTTMPLRKPPARLKKLTIKKEAKAFTMNDLEEKMRAVESRRKTKEEDIR
KRLRSDRLLSPANHSDAAQRGRAEVPFGQGLDAVGSVVVEPPQPQGGRPLKRKKSNTSSSERNF
GYEGFGVVESDLSYNQVDDVFE

hide sequence

RefSeq Acc Id:

ENSCAFP00000014630 ⟸ ENSCAFT00000015805

RefSeq Acc Id:

ENSCAFP00000064304 ⟸ ENSCAFT00000060629

RefSeq Acc Id:

ENSCAFP00000064047 ⟸ ENSCAFT00000086138

RefSeq Acc Id:	XP_038376508 ⟸ XM_038520580
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038376510 ⟸ XM_038520582
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038376507 ⟸ XM_038520579
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038376509 ⟸ XM_038520581
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038504566 ⟸ XM_038648638
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038504568 ⟸ XM_038648640
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038504565 ⟸ XM_038648637
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038504567 ⟸ XM_038648639
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038302365 ⟸ XM_038446437
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038302367 ⟸ XM_038446439
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038302364 ⟸ XM_038446436
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038302366 ⟸ XM_038446438
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038440157 ⟸ XM_038584229
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038440159 ⟸ XM_038584231
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0KHW0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038440156 ⟸ XM_038584228
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038440158 ⟸ XM_038584230
- Peptide Label:	isoform X2

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000009941	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00845024720	UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000086138.2	UniProtKB/TrEMBL
	ENSCAFT00845043643.1	UniProtKB/TrEMBL
InterPro	Stathmin_fam	UniProtKB/TrEMBL
NCBI Gene	STMND1	ENTREZGENE
PANTHER	PTHR10104	UniProtKB/TrEMBL
	STATHMIN DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
PROSITE	STATHMIN_3	UniProtKB/TrEMBL
UniProt	A0A8C0KHW0	ENTREZGENE
	A0A8I3PSG2_CANLF	UniProtKB/TrEMBL
	A0A8P0PCQ9_CANLF	UniProtKB/TrEMBL
	E2RM04	ENTREZGENE
VGNC ID	VGNC:46929	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar