OR5B2B (olfactory receptor family 5 subfamily B member 2B) - Rat Genome Database

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Gene: OR5B2B (olfactory receptor family 5 subfamily B member 2B) Canis lupus familiaris
Analyze
No known orthologs.
Symbol: OR5B2B
Name: olfactory receptor family 5 subfamily B member 2B
RGD ID: 12311218
Description: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: LOC483470; olfactory receptor 5B3-like
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11837,968,092 - 37,969,036 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1837,968,092 - 37,969,036 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1837,511,175 - 37,512,119 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01838,629,175 - 38,630,119 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1838,629,175 - 38,630,119 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11838,226,845 - 38,227,789 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01837,797,648 - 37,798,591 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01838,419,967 - 38,420,911 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in OR5B2B
29 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system reproductive system respiratory system adipose tissue
High
Medium
Low
Below cutoff 1 1 1 1 3 1 2 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000044097   ⟹   ENSCAFP00000038882
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1837,968,092 - 37,969,036 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845032854   ⟹   ENSCAFP00845025714
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1838,629,175 - 38,630,119 (-)Ensembl
RefSeq Acc Id: NM_001388585   ⟹   NP_001375514
RefSeq Status: INFERRED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1837,511,175 - 37,512,119 (-)NCBI
ROS_Cfam_1.01838,629,175 - 38,630,119 (-)NCBI
UMICH_Zoey_3.11838,226,845 - 38,227,789 (-)NCBI
UNSW_CanFamBas_1.01837,797,648 - 37,798,591 (-)NCBI
UU_Cfam_GSD_1.01838,419,967 - 38,420,911 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001375514 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000038882.1
  ENSCAFP00040019974.1
  ENSCAFP00845025714
  ENSCAFP00845025714.1
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000038882   ⟸   ENSCAFT00000044097
RefSeq Acc Id: NP_001375514   ⟸   NM_001388585
- UniProtKB: A0A8I3NWT8 (UniProtKB/TrEMBL),   A0A8P0NQE1 (UniProtKB/TrEMBL),   A0A8C0SFD9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845025714   ⟸   ENSCAFT00845032854
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000030519 Ensembl
  ENSCAFG00000050454 UniProtKB/TrEMBL
  ENSCAFG00040012508 UniProtKB/TrEMBL
  ENSCAFG00845018583 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000044097.2 UniProtKB/TrEMBL
  ENSCAFT00040023041.1 UniProtKB/TrEMBL
  ENSCAFT00845032854 ENTREZGENE
  ENSCAFT00845032854.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
NCBI Gene LOC483470 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8C0SFD9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NWT8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NQE1 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:96849 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-02-04 OR5B2B  olfactory receptor family 5 subfamily B member 2B  LOC483470  olfactory receptor 5B3-like  Symbol and/or name change 5135510 APPROVED