PEX26 (peroxisomal biogenesis factor 26) - Rat Genome Database

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Gene: PEX26 (peroxisomal biogenesis factor 26) Canis lupus familiaris
Analyze
Symbol: PEX26 (Ensembl: TUBA8)
Name: peroxisomal biogenesis factor 26 (Ensembl:tubulin alpha 8)
RGD ID: 12308576
Description: ENCODES a protein that exhibits protein-membrane adaptor activity (ortholog); INVOLVED IN protein to membrane docking (ortholog); ASSOCIATED WITH adrenoleukodystrophy (ortholog); DiGeorge syndrome (ortholog); genetic disease (ortholog); FOUND IN peroxisomal membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: peroxisome assembly protein 26; peroxisome biogenesis factor 26
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12745,675,537 - 45,688,026 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2745,675,472 - 45,725,681 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha27995,593 - 1,008,807 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02746,044,953 - 46,055,434 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2746,045,486 - 46,094,019 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12745,972,589 - 45,983,046 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02745,946,141 - 45,956,620 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.027351,258 - 361,741 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PEX26
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12745,675,537 - 45,688,026 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2745,675,472 - 45,725,681 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha27995,593 - 1,008,807 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02746,044,953 - 46,055,434 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2746,045,486 - 46,094,019 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12745,972,589 - 45,983,046 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02745,946,141 - 45,956,620 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.027351,258 - 361,741 (-)NCBIUU_Cfam_GSD_1.0
PEX26
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382218,077,990 - 18,105,396 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2218,077,923 - 18,105,396 (+)EnsemblGRCh38hg38GRCh38
GRCh372218,560,756 - 18,588,162 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362216,940,705 - 16,952,207 (+)NCBINCBI36Build 36hg18NCBI36
Build 342216,935,242 - 16,948,790NCBI
Celera222,180,325 - 2,191,835 (+)NCBICelera
Cytogenetic Map22q11.21NCBI
HuRef222,373,748 - 2,386,870 (+)NCBIHuRef
CHM1_12218,560,404 - 18,573,512 (+)NCBICHM1_1
T2T-CHM13v2.02218,749,413 - 18,776,925 (+)NCBIT2T-CHM13v2.0
Pex26
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396121,160,176 - 121,175,796 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6121,160,626 - 121,175,796 (+)EnsemblGRCm39 Ensembl
GRCm386121,183,217 - 121,198,837 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6121,183,667 - 121,198,837 (+)EnsemblGRCm38mm10GRCm38
MGSCv376121,133,685 - 121,146,203 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366121,149,286 - 121,161,804 (+)NCBIMGSCv36mm8
Celera6123,017,416 - 123,030,072 (+)NCBICelera
Cytogenetic Map6F1NCBI
cM Map657.13NCBI
Pex26
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84156,085,967 - 156,099,096 (+)NCBIGRCr8
mRatBN7.24154,414,332 - 154,426,954 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4154,414,849 - 154,426,952 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4160,680,512 - 160,692,615 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04156,464,115 - 156,476,098 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04155,087,496 - 155,099,581 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04153,747,715 - 153,760,446 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4153,747,947 - 153,760,442 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04220,836,965 - 220,849,663 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera4143,254,792 - 143,266,895 (+)NCBICelera
Cytogenetic Map4q42NCBI
Pex26
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554546,097,251 - 6,115,430 (+)NCBIChiLan1.0ChiLan1.0
PEX26
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22328,394,659 - 28,422,875 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12230,942,561 - 30,970,800 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0221,507,601 - 1,535,859 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12216,936,388 - 16,950,182 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2216,936,405 - 16,989,730 (+)Ensemblpanpan1.1panPan2
Pex26
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945109,899,814 - 109,910,401 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049368071,035,643 - 1,046,316 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049368071,035,733 - 1,046,225 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PEX26
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl570,133,024 - 70,142,503 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1570,133,024 - 70,142,515 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2572,486,678 - 72,495,849 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pex26
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247359,251,046 - 9,263,199 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247359,248,065 - 9,262,975 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PEX26
72 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 1 11 1 4 12 10
Low 4 5 11 6 5 6 2 6 8 6
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00845054948   ⟹   ENSCAFP00845043210
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2746,045,486 - 46,085,008 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845054952   ⟹   ENSCAFP00845043213
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2746,045,486 - 46,066,969 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845054957   ⟹   ENSCAFP00845043215
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2746,045,486 - 46,055,472 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845054967   ⟹   ENSCAFP00845043221
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2746,073,882 - 46,093,160 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845054972   ⟹   ENSCAFP00845043225
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2746,073,888 - 46,094,019 (+)Ensembl
RefSeq Acc Id: XM_038439600   ⟹   XP_038295528
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02746,044,953 - 46,055,434 (+)NCBI
RefSeq Acc Id: XM_038459527   ⟹   XP_038315455
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha27995,593 - 1,008,807 (-)NCBI
RefSeq Acc Id: XM_038512659   ⟹   XP_038368587
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12745,972,589 - 45,983,046 (+)NCBI
RefSeq Acc Id: XM_038577890   ⟹   XP_038433818
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.027351,258 - 361,741 (-)NCBI
RefSeq Acc Id: XM_038642102   ⟹   XP_038498030
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02745,946,141 - 45,956,620 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_038368587   ⟸   XM_038512659
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038498030   ⟸   XM_038642102
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038295528   ⟸   XM_038439600
- Peptide Label: isoform X1
- UniProtKB: A0A8C0K0D8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038315455   ⟸   XM_038459527
- Peptide Label: isoform X1
- UniProtKB: A0A8C0K0D8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038433818   ⟸   XM_038577890
- Peptide Label: isoform X1
- UniProtKB: A0A8C0K0D8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845043213   ⟸   ENSCAFT00845054952
RefSeq Acc Id: ENSCAFP00845043221   ⟸   ENSCAFT00845054967
RefSeq Acc Id: ENSCAFP00845043215   ⟸   ENSCAFT00845054957
RefSeq Acc Id: ENSCAFP00845043225   ⟸   ENSCAFT00845054972
RefSeq Acc Id: ENSCAFP00845043210   ⟸   ENSCAFT00845054948
Protein Domains
Tubulin/FtsZ 2-layer sandwich   Tubulin/FtsZ GTPase

Promoters
RGD ID:13688238
Promoter ID:EPDNEW_C6308
Type:multiple initiation site
Name:PEX26_1
Description:peroxisomal biogenesis factor 26
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12745,675,476 - 45,675,536EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000016229 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00845030913 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000025745.5 UniProtKB/TrEMBL
  ENSCAFT00000046056.4 UniProtKB/TrEMBL
  ENSCAFT00000098587.1 UniProtKB/TrEMBL
  ENSCAFT00845054948.1 UniProtKB/TrEMBL
  ENSCAFT00845054952.1 UniProtKB/TrEMBL
  ENSCAFT00845054957 ENTREZGENE
  ENSCAFT00845054957.1 UniProtKB/TrEMBL
  ENSCAFT00845054967.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.600 UniProtKB/TrEMBL
  3.30.1330.20 UniProtKB/TrEMBL
  3.40.50.1440 UniProtKB/TrEMBL
InterPro Alpha_tubulin UniProtKB/TrEMBL
  Pex26 UniProtKB/TrEMBL
  Tub_FtsZ_C UniProtKB/TrEMBL
  Tubulin UniProtKB/TrEMBL
  Tubulin/FtsZ-like_C UniProtKB/TrEMBL
  Tubulin/FtsZ_2-layer-sand-dom UniProtKB/TrEMBL
  Tubulin/FtsZ_GTPase_sf UniProtKB/TrEMBL
  Tubulin_C UniProtKB/TrEMBL
  Tubulin_CS UniProtKB/TrEMBL
  Tubulin_FtsZ_GTPase UniProtKB/TrEMBL
NCBI Gene PEX26 ENTREZGENE
PANTHER PEROXISOME ASSEMBLY PROTEIN 26 UniProtKB/TrEMBL
  PTHR11588 UniProtKB/TrEMBL
  PTHR16262 UniProtKB/TrEMBL
  TUBULIN ALPHA-8 CHAIN-RELATED UniProtKB/TrEMBL
Pfam Pex26 UniProtKB/TrEMBL
  Tubulin UniProtKB/TrEMBL
  Tubulin_C UniProtKB/TrEMBL
PRINTS ALPHATUBULIN UniProtKB/TrEMBL
  TUBULIN UniProtKB/TrEMBL
PROSITE TUBULIN UniProtKB/TrEMBL
SMART Tubulin UniProtKB/TrEMBL
  Tubulin_C UniProtKB/TrEMBL
Superfamily-SCOP SSF52490 UniProtKB/TrEMBL
  SSF55307 UniProtKB/TrEMBL
UniProt A0A8C0K0D8 ENTREZGENE
  A0A8I3Q5T9_CANLF UniProtKB/TrEMBL
  A0A8I3QB72_CANLF UniProtKB/TrEMBL
  A0A8I3QQ86_CANLF UniProtKB/TrEMBL
  A0A8I3S7W0_CANLF UniProtKB/TrEMBL
  A0A8P0NSX4_CANLF UniProtKB/TrEMBL
  A0A8P0PH23_CANLF UniProtKB/TrEMBL
  A0A8P0SKJ1_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:44433 ENTREZGENE