IFT20 (intraflagellar transport 20)

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Gene: IFT20 (intraflagellar transport 20) Canis lupus familiaris

Analyze

Symbol:

IFT20

Name:

intraflagellar transport 20

RGD ID:

12307164

Description:

ENCODES a protein that exhibits opsin binding (inferred); small GTPase binding (inferred); INVOLVED IN cardiac muscle cell differentiation (ortholog); centrosome localization (ortholog); cilium assembly (ortholog); FOUND IN intraciliary transport particle B (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

intraflagellar transport 20 homolog; intraflagellar transport protein 20 homolog

RGD Orthologs

Human

Mouse

Rat

Chinchilla

Bonobo

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	42,581,117 - 42,587,830 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	42,581,433 - 42,587,804 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	41,738,040 - 41,744,762 (-)	NCBI
ROS_Cfam_1.0	9	43,400,250 - 43,406,984 (-)	NCBI
ROS_Cfam_1.0 Ensembl	9	43,400,253 - 43,406,956 (-)	Ensembl
UMICH_Zoey_3.1	9	42,184,523 - 42,191,233 (-)	NCBI
UNSW_CanFamBas_1.0	9	42,475,746 - 42,482,460 (-)	NCBI
UU_Cfam_GSD_1.0	9	42,552,794 - 42,559,508 (-)	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cardiac muscle cell differentiation (IEA,ISO)

centrosome localization (IBA,IEA,ISO)

cilium assembly (IEA,ISO)

cochlea development (IEA,ISO)

establishment of epithelial cell apical/basal polarity (IEA,ISO)

establishment of planar polarity (IEA,ISO)

inner ear receptor cell stereocilium organization (IEA,ISO)

intraciliary transport (IBA,IEA,ISO)

kidney development (IEA,ISO)

neural precursor cell proliferation (IEA,ISO)

neurogenesis (IEA,ISO)

opsin transport (IEA,ISO)

photoreceptor cell outer segment organization (IEA,ISO)

positive regulation of cilium assembly (IEA)

protein localization to ciliary membrane (IEA)

protein localization to cilium (IBA,IEA,ISO)

protein localization to Golgi apparatus (IEA,ISO)

protein localization to plasma membrane (IEA,ISO)

regulation of autophagosome assembly (IEA)

regulation of canonical Wnt signaling pathway (IEA,ISO)

regulation of cilium assembly (IEA)

regulation of platelet-derived growth factor receptor-alpha signaling pathway (IEA)

smoothened signaling pathway (IEA,ISO)

spermatogenesis (IEA,ISO)

stem cell proliferation (IEA,ISO)

visual learning (IEA,ISO)

Cellular Component

acrosomal vesicle (IEA)

cell projection (IEA)

centriole (IEA)

centrosome (IBA,IEA)

ciliary basal body (IEA)

ciliary base (IEA)

cilium (IBA,IEA)

cis-Golgi network (IEA)

cytoplasm (IEA)

cytoplasmic vesicle (IEA)

dendrite terminus (IEA)

Golgi apparatus (IBA,IEA)

intraciliary transport particle B (IBA,IEA,ISO)

kinociliary basal body (IEA)

manchette (IEA)

microvillus (IEA)

motile cilium (IEA)

neuron projection (IEA)

photoreceptor connecting cilium (IEA)

photoreceptor outer segment (IEA)

stereocilium (IEA)

Molecular Function

opsin binding (IEA)

protein binding (ISO)

small GTPase binding (IEA)

References

Genomics

Comparative Map Data

IFT20
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	42,581,117 - 42,587,830 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	42,581,433 - 42,587,804 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	41,738,040 - 41,744,762 (-)	NCBI
ROS_Cfam_1.0	9	43,400,250 - 43,406,984 (-)	NCBI
ROS_Cfam_1.0 Ensembl	9	43,400,253 - 43,406,956 (-)	Ensembl
UMICH_Zoey_3.1	9	42,184,523 - 42,191,233 (-)	NCBI
UNSW_CanFamBas_1.0	9	42,475,746 - 42,482,460 (-)	NCBI
UU_Cfam_GSD_1.0	9	42,552,794 - 42,559,508 (-)	NCBI

IFT20
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	28,328,326 - 28,335,472 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	17	28,328,325 - 28,335,489 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	26,655,352 - 26,662,498 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	23,679,480 - 23,686,622 (-)	NCBI	NCBI36		hg18	NCBI36
Celera	17	23,517,095 - 23,524,237 (-)	NCBI
Cytogenetic Map	17	q11.2	NCBI
HuRef	17	22,863,745 - 22,870,909 (-)	NCBI		HuRef
CHM1_1	17	26,718,244 - 26,725,407 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	29,270,174 - 29,277,320 (-)	NCBI

Ift20
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	78,427,187 - 78,432,558 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	11	78,427,187 - 78,432,563 (+)	Ensembl
GRCm38	11	78,536,361 - 78,541,732 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	78,536,361 - 78,541,737 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	78,349,938 - 78,354,975 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	11	78,352,631 - 78,357,668 (+)	NCBI			mm8
Celera	11	88,168,509 - 88,173,546 (+)	NCBI		Celera
Cytogenetic Map	11	B5	NCBI

Ift20
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	10	63,432,597 - 63,438,125 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	10	63,432,633 - 63,438,124 (+)	Ensembl
Rnor_6.0	10	65,805,808 - 65,811,353 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	65,805,860 - 65,811,351 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	65,832,267 - 65,837,794 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	64,647,046 - 64,652,537 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	10	64,660,751 - 64,665,876 (+)	NCBI
Celera	10	62,409,186 - 62,414,668 (+)	NCBI		Celera
Cytogenetic Map	10	q25	NCBI

Ift20
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955481	4,799,548 - 4,807,751 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955481	4,799,548 - 4,807,751 (+)	NCBI	ChiLan1.0	ChiLan1.0

IFT20
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	17	28,941,303 - 28,948,129 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	28,941,303 - 28,948,129 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	17	28,438,960 - 28,446,113 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

Ift20
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	41,603,943 - 41,613,893 (-)	NCBI
SpeTri2.0	NW_004936538	4,484,484 - 4,491,688 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

IFT20
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	44,609,586 - 44,616,669 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	44,609,586 - 44,616,685 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	46,522,079 - 46,529,162 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

IFT20
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	22,094,383 - 22,102,234 (-)	NCBI	ChlSab1.1		chlSab2
Vero_WHO_p1.0	NW_023666075	8,026,450 - 8,034,181 (+)	NCBI	Vero_WHO_p1.0

Ift20
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624786	928,123 - 939,515 (-)	NCBI	HetGla_female_1.0		hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium	5	5	21	5	6	5	6	3	12	8	10	6
Low			1	1		1		3
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003435305	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038486385	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038486386	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038486387	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038548223	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038548224	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038548225	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038610490	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038612188	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038612189	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038612190	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038677445	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038677447	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038677448	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_537740	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000094	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSCAFT00000029619 ⟹ ENSCAFP00000027528

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	9	42,581,433 - 42,587,804 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000071964 ⟹ ENSCAFP00000060249

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	9	42,581,535 - 42,587,804 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845027301 ⟹ ENSCAFP00845021485

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	9	43,400,253 - 43,406,956 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845027318 ⟹ ENSCAFP00845021499

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	9	43,400,671 - 43,406,956 (-)	Ensembl

RefSeq Acc Id:

XM_003435305 ⟹ XP_003435353

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	9	42,581,117 - 42,587,828 (-)	NCBI
Dog10K_Boxer_Tasha	9	41,738,040 - 41,744,760 (-)	NCBI

Sequence:

show sequence

GTACTTCCGCAGTCAGGTAATGACGTTACGGGTAAACAGTAGCCGTGGCAGCGGCTGAGGCCGG
CGGGCGAGGCACCGGCTGCTGCTGCCCGGGGAGAGAGGCTGCCTGCAGGAAACAGCTCGGGCGG
TAGCGCGCCGCCGCTACGGGGTTGCCAGCTATGGCCAAGGACATCCTGGGTGAAGCAGGGCTGC
ACTTTGATGAACTGAACAAGCTGCGCGTGTTGGACCCTGAGGTCACCCAGCAGACCATAGAGCT
CAAGGAGGAGTGCAAGGACTTTGTGGACAAAATTGGCCAGTTTCAGAAAATAGTTGGTGGTTTA
ATTGAGCTTGTTGACCAACTTGCAAAAGAAGCAGAAAATGAAAAGATGAAGGCCATTGGTGCTC
GGAACTTGCTCAAATCTATAGCAAAACAAAGAGAAGCCCAACAGCAGCAACTCCAAGCACTAAT
AGCAGAAAAGAAAATGCAGCTTGAAAGGTATCGGGTTGAATATGAAGCTTTGTGTAAAGTAGAA
GCAGAACAAAATGAATTTATTGACCAATTTATTTTTCAGAAATGAACTGAAAGTTTCATTTTAT
AGCAGGAGGGCAAAAAAACAAAACAAAACCCAAAAAACCTCTGTGCCGTTCCAGTGACTTGACT
AATGACCCACGTTTGTCCTGAGAGATGGTGTGTAAGGAACACAGCATCTTTGAAGGCAGTAAAC
CAATATGGGGGAGCTTATTGCAGATGGCCATGTGCATCTGCTGGTGAACACCTAGTAGCCATGG
TGGTCCAGGCTCTCACTTCTTGGCATTCTTAGCCTGAACTGAGCAGTCTGTACACTCTGATCCT
TTTTTCTTTTTCTTCTTTTTTTGTAAATTCACATAGCTTTGGAAAGGAAGAGCAATAAATTATT
GTTTTCAAA

hide sequence

RefSeq Acc Id:

XM_038486385 ⟹ XP_038342313

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	9	42,184,523 - 42,191,232 (-)	NCBI

RefSeq Acc Id:

XM_038486386 ⟹ XP_038342314

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	9	42,184,523 - 42,191,231 (-)	NCBI

RefSeq Acc Id:

XM_038486387 ⟹ XP_038342315

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	9	42,184,523 - 42,191,233 (-)	NCBI

RefSeq Acc Id:

XM_038548223 ⟹ XP_038404151

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	9	42,552,794 - 42,559,507 (-)	NCBI

RefSeq Acc Id:

XM_038548224 ⟹ XP_038404152

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	9	42,552,794 - 42,559,506 (-)	NCBI

RefSeq Acc Id:

XM_038548225 ⟹ XP_038404153

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	9	42,552,794 - 42,559,508 (-)	NCBI

RefSeq Acc Id:

XM_038610490 ⟹ XP_038466418

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	9	41,738,040 - 41,744,762 (-)	NCBI

RefSeq Acc Id:

XM_038612188 ⟹ XP_038468116

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	9	42,475,746 - 42,482,459 (-)	NCBI

RefSeq Acc Id:

XM_038612189 ⟹ XP_038468117

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	9	42,475,746 - 42,482,458 (-)	NCBI

RefSeq Acc Id:

XM_038612190 ⟹ XP_038468118

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	9	42,475,746 - 42,482,460 (-)	NCBI

RefSeq Acc Id:

XM_038677445 ⟹ XP_038533373

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	9	43,400,250 - 43,406,983 (-)	NCBI

RefSeq Acc Id:

XM_038677447 ⟹ XP_038533375

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	9	43,400,250 - 43,406,982 (-)	NCBI

RefSeq Acc Id:

XM_038677448 ⟹ XP_038533376

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	9	43,400,250 - 43,406,984 (-)	NCBI

RefSeq Acc Id:

XM_537740 ⟹ XP_537740

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	9	42,581,117 - 42,587,830 (-)	NCBI
Dog10K_Boxer_Tasha	9	41,738,040 - 41,744,761 (-)	NCBI

Sequence:

show sequence

AAGTACTTCCGCAGTCAGGTAATGACGTTACGGGTAAACAGTAGCCGTGGCAGCGGCTGAGGCC
GGCGGGCGAGGCACCGGCTGCTGCTGCCCGGGGAGAGAGGCTGCCTGCAGGAAACAGCTCGGGC
GGTAGCGCGCCGCCGCTACGGGGTTGCCAGCTAAACTATGTACTCCTCCCGGGCGGGCACCATG
TTGCGCTCATCTTTGTACCCCCAGCATCTAGCAGTGTTGGCATGTAGTAGGCACTCAAGAAATG
TGTGTTGAATGAACGATGCCAGTGACAAGCCACCTGGACTTTATTCTTTCCTGACCCTTGCTCC
TATGACACTTCCTCCTGGCTGCCACTATCACAGAGCTTCTCTTCTCTAGGGAAGCCGGAAGGGA
AACAGCTATGGCCAAGGACATCCTGGGTGAAGCAGGGCTGCACTTTGATGAACTGAACAAGCTG
CGCGTGTTGGACCCTGAGGTCACCCAGCAGACCATAGAGCTCAAGGAGGAGTGCAAGGACTTTG
TGGACAAAATTGGCCAGTTTCAGAAAATAGTTGGTGGTTTAATTGAGCTTGTTGACCAACTTGC
AAAAGAAGCAGAAAATGAAAAGATGAAGGCCATTGGTGCTCGGAACTTGCTCAAATCTATAGCA
AAACAAAGAGAAGCCCAACAGCAGCAACTCCAAGCACTAATAGCAGAAAAGAAAATGCAGCTTG
AAAGGTATCGGGTTGAATATGAAGCTTTGTGTAAAGTAGAAGCAGAACAAAATGAATTTATTGA
CCAATTTATTTTTCAGAAATGAACTGAAAGTTTCATTTTATAGCAGGAGGGCAAAAAAACAAAA
CAAAACCCAAAAAACCTCTGTGCCGTTCCAGTGACTTGACTAATGACCCACGTTTGTCCTGAGA
GATGGTGTGTAAGGAACACAGCATCTTTGAAGGCAGTAAACCAATATGGGGGAGCTTATTGCAG
ATGGCCATGTGCATCTGCTGGTGAACACCTAGTAGCCATGGTGGTCCAGGCTCTCACTTCTTGG
CATTCTTAGCCTGAACTGAGCAGTCTGTACACTCTGATCCTTTTTTCTTTTTCTTCTTTTTTTG
TAAATTCACATAGCTTTGGAAAGGAAGAGCAATAAATTATTGTTTTCAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_003435353	(Get FASTA)	NCBI Sequence Viewer
	XP_038342313	(Get FASTA)	NCBI Sequence Viewer
	XP_038342314	(Get FASTA)	NCBI Sequence Viewer
	XP_038342315	(Get FASTA)	NCBI Sequence Viewer
	XP_038404151	(Get FASTA)	NCBI Sequence Viewer
	XP_038404152	(Get FASTA)	NCBI Sequence Viewer
	XP_038404153	(Get FASTA)	NCBI Sequence Viewer
	XP_038466418	(Get FASTA)	NCBI Sequence Viewer
	XP_038468116	(Get FASTA)	NCBI Sequence Viewer
	XP_038468117	(Get FASTA)	NCBI Sequence Viewer
	XP_038468118	(Get FASTA)	NCBI Sequence Viewer
	XP_038533373	(Get FASTA)	NCBI Sequence Viewer
	XP_038533375	(Get FASTA)	NCBI Sequence Viewer
	XP_038533376	(Get FASTA)	NCBI Sequence Viewer
	XP_537740	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	XP_003435353 ⟸ XM_003435305
- UniProtKB:	E2QWN9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAKDILGEAGLHFDELNKLRVLDPEVTQQTIELKEECKDFVDKIGQFQKIVGGLIELVDQLAKE AENEKMKAIGARNLLKSIAKQREAQQQQLQALIAEKKMQLERYRVEYEALCKVEAEQNEFIDQF IFQK hide sequence

RefSeq Acc Id:	XP_537740 ⟸ XM_537740
- UniProtKB:	E2QWN9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAKDILGEAGLHFDELNKLRVLDPEVTQQTIELKEECKDFVDKIGQFQKIVGGLIELVDQLAKE AENEKMKAIGARNLLKSIAKQREAQQQQLQALIAEKKMQLERYRVEYEALCKVEAEQNEFIDQF IFQK hide sequence

RefSeq Acc Id:

ENSCAFP00000027528 ⟸ ENSCAFT00000029619

RefSeq Acc Id:

ENSCAFP00000060249 ⟸ ENSCAFT00000071964

RefSeq Acc Id:

XP_038342315 ⟸ XM_038486387

RefSeq Acc Id:

XP_038342313 ⟸ XM_038486385

RefSeq Acc Id:

XP_038342314 ⟸ XM_038486386

RefSeq Acc Id:

XP_038468118 ⟸ XM_038612190

RefSeq Acc Id:

XP_038468116 ⟸ XM_038612188

RefSeq Acc Id:

XP_038468117 ⟸ XM_038612189

RefSeq Acc Id:

XP_038533376 ⟸ XM_038677448

RefSeq Acc Id:

XP_038533373 ⟸ XM_038677445

RefSeq Acc Id:

XP_038533375 ⟸ XM_038677447

RefSeq Acc Id:

XP_038466418 ⟸ XM_038610490

RefSeq Acc Id:

XP_038404153 ⟸ XM_038548225

RefSeq Acc Id:

XP_038404151 ⟸ XM_038548223

RefSeq Acc Id:

XP_038404152 ⟸ XM_038548224

RefSeq Acc Id:

ENSCAFP00845021499 ⟸ ENSCAFT00845027318

RefSeq Acc Id:

ENSCAFP00845021485 ⟸ ENSCAFT00845027301

Promoters

RGD ID:

13684669

Promoter ID:

EPDNEW_C2737

Type:

initiation region

Name:

IFT20_1

Description:

intraflagellar transport 20

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	9	42,587,791 - 42,587,851	EPDNEW

Damaging Variants

Assembly: CanFam3.1

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
9	42581494	42581495	A	T	snv	Chinese indigenous dogs (DQ4)
9	42583941	42583942	G	A	snv	Mixed Breed (MI016)

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000018659	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030013952	UniProtKB/TrEMBL
	ENSCAFG00040019992	UniProtKB/TrEMBL
	ENSCAFG00845015286	Ensembl, ENTREZGENE
Ensembl Protein	ENSCAFP00000027528	UniProtKB/TrEMBL
	ENSCAFP00000060249	UniProtKB/TrEMBL
	ENSCAFP00030022676	UniProtKB/TrEMBL
	ENSCAFP00030022732	UniProtKB/TrEMBL
	ENSCAFP00040032291	UniProtKB/TrEMBL
	ENSCAFP00040032309	UniProtKB/TrEMBL
	ENSCAFP00845021485	ENTREZGENE
Ensembl Transcript	ENSCAFT00000029619	UniProtKB/TrEMBL
	ENSCAFT00000071964	UniProtKB/TrEMBL
	ENSCAFT00030025966	UniProtKB/TrEMBL
	ENSCAFT00030026031	UniProtKB/TrEMBL
	ENSCAFT00040037070	UniProtKB/TrEMBL
	ENSCAFT00040037090	UniProtKB/TrEMBL
	ENSCAFT00845027301	ENTREZGENE
InterPro	FT20	UniProtKB/TrEMBL
KEGG Report	cfa:480620	UniProtKB/TrEMBL
NCBI Gene	IFT20	ENTREZGENE
PANTHER	PTHR31978	UniProtKB/TrEMBL
Pfam	IFT20	UniProtKB/TrEMBL
UniProt	A0A5F4D0T1_CANLF	UniProtKB/TrEMBL
	A0A8C0N7T2_CANLF	UniProtKB/TrEMBL
	A0A8C0NC67_CANLF	UniProtKB/TrEMBL
	E2QWN9	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:54957	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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