CBARP (CACN subunit beta associated regulatory protein) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: CBARP (CACN subunit beta associated regulatory protein) Canis lupus familiaris
Analyze
Symbol: CBARP
Name: CACN subunit beta associated regulatory protein
RGD ID: 12306921
Description: ENCODES a protein that exhibits transmembrane transporter binding (ortholog); INVOLVED IN negative regulation of calcium ion transmembrane transport (ortholog); negative regulation of calcium ion-dependent exocytosis (ortholog); negative regulation of voltage-gated calcium channel activity (ortholog); ASSOCIATED WITH cerebral creatine deficiency syndrome (ortholog); Peutz-Jeghers syndrome (ortholog); FOUND IN growth cone (ortholog); plasma membrane (ortholog); secretory granule (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: C20H19orf26; voltage-dependent calcium channel beta subunit-associated regulatory protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12057,554,162 - 57,559,126 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2057,554,032 - 57,559,612 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2057,352,590 - 57,361,543 (+)NCBI
ROS_Cfam_1.02058,292,499 - 58,301,436 (+)NCBI
UMICH_Zoey_3.12057,348,311 - 57,356,988 (+)NCBI
UNSW_CanFamBas_1.02057,827,591 - 57,836,230 (+)NCBI
UU_Cfam_GSD_1.02058,030,594 - 58,039,504 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
CBARP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12057,554,162 - 57,559,126 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2057,554,032 - 57,559,612 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2057,352,590 - 57,361,543 (+)NCBI
ROS_Cfam_1.02058,292,499 - 58,301,436 (+)NCBI
UMICH_Zoey_3.12057,348,311 - 57,356,988 (+)NCBI
UNSW_CanFamBas_1.02057,827,591 - 57,836,230 (+)NCBI
UU_Cfam_GSD_1.02058,030,594 - 58,039,504 (+)NCBI
CBARP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl191,228,287 - 1,238,027 (-)EnsemblGRCh38hg38GRCh38
GRCh38191,228,287 - 1,238,512 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37191,228,286 - 1,238,004 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36191,180,947 - 1,188,990 (-)NCBINCBI36hg18NCBI36
Build 34191,180,954 - 1,188,841NCBI
Celera191,164,180 - 1,172,223 (-)NCBI
Cytogenetic Map19p13.3NCBI
HuRef191,005,343 - 1,039,838 (-)NCBIHuRef
CHM1_1191,229,860 - 1,237,926 (-)NCBICHM1_1
Cbarp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391079,966,268 - 79,976,189 (-)NCBIGRCm39mm39
GRCm39 Ensembl1079,966,285 - 79,976,669 (-)Ensembl
GRCm381080,130,434 - 80,140,355 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1080,130,451 - 80,140,835 (-)EnsemblGRCm38mm10GRCm38
MGSCv371079,590,603 - 79,602,234 (-)NCBIGRCm37mm9NCBIm37
MGSCv361079,593,179 - 79,598,128 (-)NCBImm8
Celera1081,142,690 - 81,154,321 (-)NCBICelera
Cytogenetic Map10C1NCBI
Cbarp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.279,566,637 - 9,575,204 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl79,566,364 - 9,575,204 (+)Ensembl
Rnor_6.0712,433,422 - 12,441,048 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl712,433,933 - 12,441,048 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0712,603,527 - 12,611,153 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4711,079,431 - 11,087,057 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1711,079,064 - 11,086,662 (+)NCBI
Celera77,743,241 - 7,750,842 (+)NCBICelera
Cytogenetic Map7q11NCBI
Cbarp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554956,671,726 - 6,677,205 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554956,671,719 - 6,678,338 (+)NCBIChiLan1.0ChiLan1.0
LOC100989336
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1191,212,854 - 1,220,108 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl191,212,854 - 1,220,104 (-)Ensemblpanpan1.1panPan2
LOC101976074
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118217,216,615 - 217,233,911 (+)NCBI
SpeTri2.0NW_004936588601,108 - 607,823 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CBARP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl277,221,171 - 77,230,056 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1277,220,790 - 77,230,418 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2277,823,483 - 77,831,001 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103233598
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.16999,327 - 1,006,632 (-)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660817,857,295 - 7,864,976 (+)NCBIVero_WHO_p1.0
Cbarp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248287,435,633 - 7,444,483 (+)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 16 5 6 12 8 10 5
Low 5 6 6 1 6 6 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000037156   ⟹   ENSCAFP00000032612
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2057,554,032 - 57,559,612 (+)Ensembl
RefSeq Acc Id: XM_038426677   ⟹   XP_038282605
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02058,292,499 - 58,301,436 (+)NCBI
RefSeq Acc Id: XM_038455347   ⟹   XP_038311275
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2057,352,590 - 57,361,543 (+)NCBI
RefSeq Acc Id: XM_038504986   ⟹   XP_038360914
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12057,348,311 - 57,356,988 (+)NCBI
RefSeq Acc Id: XM_038565394   ⟹   XP_038421322
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02058,030,594 - 58,039,504 (+)NCBI
RefSeq Acc Id: XM_038629514   ⟹   XP_038485442
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02057,827,591 - 57,836,230 (+)NCBI
Reference Sequences
RefSeq Acc Id: ENSCAFP00000032612   ⟸   ENSCAFT00000037156
RefSeq Acc Id: XP_038360914   ⟸   XM_038504986
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038485442   ⟸   XM_038629514
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038282605   ⟸   XM_038426677
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038311275   ⟸   XM_038455347
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038421322   ⟸   XM_038565394
- Peptide Label: isoform X4


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000023991 Ensembl
NCBI Gene CBARP ENTREZGENE
VGNC ID VGNC:54587 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-01 CBARP  CACN subunit beta associated regulatory protein    CACN beta subunit associated regulatory protein  Symbol and/or name change 5135510 APPROVED