NNAT (neuronatin) - Rat Genome Database

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Gene: NNAT (neuronatin) Canis lupus familiaris
Analyze
Symbol: NNAT
Name: neuronatin
RGD ID: 12305530
Description: INVOLVED IN establishment of localization in cell (ortholog); insulin secretion (ortholog); neuron differentiation (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 5 (ortholog); focal epilepsy (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12426,119,153 - 26,121,573 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2426,118,991 - 26,120,906 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2425,764,843 - 25,767,256 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02426,815,822 - 26,818,235 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2426,815,835 - 26,817,449 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12426,091,104 - 26,093,520 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02426,198,494 - 26,200,910 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02426,686,053 - 26,688,469 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
membrane  (IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
NNAT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12426,119,153 - 26,121,573 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2426,118,991 - 26,120,906 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2425,764,843 - 25,767,256 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02426,815,822 - 26,818,235 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2426,815,835 - 26,817,449 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12426,091,104 - 26,093,520 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02426,198,494 - 26,200,910 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02426,686,053 - 26,688,469 (+)NCBIUU_Cfam_GSD_1.0
NNAT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382037,521,250 - 37,523,690 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2037,521,206 - 37,523,690 (+)EnsemblGRCh38hg38GRCh38
GRCh372036,149,652 - 36,152,092 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362035,583,021 - 35,585,506 (+)NCBINCBI36Build 36hg18NCBI36
Build 342035,583,020 - 35,585,502NCBI
Celera2032,856,869 - 32,859,355 (+)NCBICelera
Cytogenetic Map20q11.23NCBI
HuRef2032,885,325 - 32,887,812 (+)NCBIHuRef
CHM1_12036,052,423 - 36,054,893 (+)NCBICHM1_1
T2T-CHM13v2.02039,245,345 - 39,247,787 (+)NCBIT2T-CHM13v2.0
Nnat
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392157,401,936 - 157,404,445 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2157,401,998 - 157,404,442 (+)EnsemblGRCm39 Ensembl
GRCm382157,560,078 - 157,562,525 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2157,560,078 - 157,562,522 (+)EnsemblGRCm38mm10GRCm38
MGSCv372157,385,846 - 157,388,258 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362157,251,564 - 157,253,945 (+)NCBIMGSCv36mm8
Celera2163,504,157 - 163,506,569 (+)NCBICelera
Cytogenetic Map2H1NCBI
cM Map278.4NCBI
Nnat
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83166,646,373 - 166,648,845 (+)NCBIGRCr8
mRatBN7.23146,225,941 - 146,228,868 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3146,226,407 - 146,228,834 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3150,051,744 - 150,054,205 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03158,552,933 - 158,555,392 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03156,294,850 - 156,297,310 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03154,043,873 - 154,046,334 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3154,043,873 - 154,046,330 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03161,553,358 - 161,557,429 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43148,269,404 - 148,271,781 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13148,175,312 - 148,177,690 (+)NCBI
Celera3144,930,375 - 144,932,836 (+)NCBICelera
Cytogenetic Map3q42NCBI
Nnat
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544519,121,164 - 19,125,514 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544519,121,164 - 19,125,514 (-)NCBIChiLan1.0ChiLan1.0
NNAT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22143,246,341 - 43,251,217 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12043,239,925 - 43,244,315 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02033,842,071 - 33,845,575 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12034,955,233 - 34,959,493 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2034,955,234 - 34,959,493 (+)Ensemblpanpan1.1panPan2
Nnat
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640175,007,353 - 175,009,820 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365613,739,664 - 3,742,154 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365613,739,664 - 3,744,015 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NNAT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11740,625,990 - 40,629,523 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21746,042,960 - 46,045,928 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NNAT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1226,229,765 - 26,232,249 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl226,230,696 - 26,232,127 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605075,102,293 - 75,105,653 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nnat
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248422,122,968 - 2,125,490 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NNAT
28 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High 1
Medium 3 15 5 12 10 5
Low 2 5 7 6 6 6 1 6 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_038433796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038433797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038508945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038508946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038508947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038572277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038572278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038572279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038636531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038636532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038636533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_847444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_860793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000013957   ⟹   ENSCAFP00000012912
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2426,118,991 - 26,120,904 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000067990   ⟹   ENSCAFP00000051402
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2426,119,166 - 26,120,906 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845050246   ⟹   ENSCAFP00845039392
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2426,815,835 - 26,817,449 (+)Ensembl
RefSeq Acc Id: XM_038433796   ⟹   XP_038289724
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02426,815,822 - 26,818,235 (+)NCBI
RefSeq Acc Id: XM_038433797   ⟹   XP_038289725
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02426,815,822 - 26,818,191 (+)NCBI
RefSeq Acc Id: XM_038508945   ⟹   XP_038364873
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12426,091,104 - 26,093,518 (+)NCBI
RefSeq Acc Id: XM_038508946   ⟹   XP_038364874
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12426,091,104 - 26,093,474 (+)NCBI
RefSeq Acc Id: XM_038508947   ⟹   XP_038364875
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12426,091,104 - 26,093,520 (+)NCBI
RefSeq Acc Id: XM_038572277   ⟹   XP_038428205
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02426,686,053 - 26,688,467 (+)NCBI
RefSeq Acc Id: XM_038572278   ⟹   XP_038428206
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02426,686,053 - 26,688,423 (+)NCBI
RefSeq Acc Id: XM_038572279   ⟹   XP_038428207
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02426,686,053 - 26,688,469 (+)NCBI
RefSeq Acc Id: XM_038636531   ⟹   XP_038492459
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02426,198,494 - 26,200,908 (+)NCBI
RefSeq Acc Id: XM_038636532   ⟹   XP_038492460
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02426,198,494 - 26,200,864 (+)NCBI
RefSeq Acc Id: XM_038636533   ⟹   XP_038492461
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02426,198,494 - 26,200,910 (+)NCBI
RefSeq Acc Id: XM_847444   ⟹   XP_852537
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12426,119,153 - 26,121,573 (+)NCBI
Dog10K_Boxer_Tasha2425,764,843 - 25,767,256 (+)NCBI
Sequence:
RefSeq Acc Id: XM_860793   ⟹   XP_865886
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12426,119,154 - 26,121,573 (+)NCBI
Dog10K_Boxer_Tasha2425,764,843 - 25,767,212 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_852537   ⟸   XM_847444
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KHI0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_865886   ⟸   XM_860793
- Peptide Label: isoform X2
- UniProtKB: A0A8C0SZY5 (UniProtKB/TrEMBL),   A0A8C0KJ11 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000051402   ⟸   ENSCAFT00000067990
RefSeq Acc Id: ENSCAFP00000012912   ⟸   ENSCAFT00000013957
RefSeq Acc Id: XP_038364875   ⟸   XM_038508947
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038364873   ⟸   XM_038508945
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038364874   ⟸   XM_038508946
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038492461   ⟸   XM_038636533
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038492459   ⟸   XM_038636531
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038492460   ⟸   XM_038636532
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038289724   ⟸   XM_038433796
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KHI0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038289725   ⟸   XM_038433797
- Peptide Label: isoform X2
- UniProtKB: A0A8C0SZY5 (UniProtKB/TrEMBL),   A0A8C0KJ11 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038428207   ⟸   XM_038572279
- Peptide Label: isoform X5
- UniProtKB: A0A8C0T148 (UniProtKB/TrEMBL),   A0A8I3Q3S9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038428205   ⟸   XM_038572277
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KHI0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038428206   ⟸   XM_038572278
- Peptide Label: isoform X2
- UniProtKB: A0A8C0KJ11 (UniProtKB/TrEMBL),   A0A8C0SZY5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845039392   ⟸   ENSCAFT00845050246

Promoters
RGD ID:13687602
Promoter ID:EPDNEW_C5671
Type:single initiation site
Name:NNAT_1
Description:neuronatin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12426,119,175 - 26,119,235EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000008786 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030025700 UniProtKB/TrEMBL
  ENSCAFG00040017811 UniProtKB/TrEMBL
  ENSCAFG00845028468 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000067990.2 UniProtKB/TrEMBL
  ENSCAFT00030047457.1 UniProtKB/TrEMBL
  ENSCAFT00030047470.1 UniProtKB/TrEMBL
  ENSCAFT00040032895.1 UniProtKB/TrEMBL
  ENSCAFT00040032973.1 UniProtKB/TrEMBL
  ENSCAFT00845050246.1 UniProtKB/TrEMBL
InterPro Neuronatin UniProtKB/TrEMBL
NCBI Gene NNAT ENTREZGENE
PANTHER NEURONATIN UniProtKB/TrEMBL
  PTHR15285 UniProtKB/TrEMBL
UniProt A0A8C0KHI0 ENTREZGENE
  A0A8C0KJ11 ENTREZGENE
  A0A8C0PGM3_CANLF UniProtKB/TrEMBL
  A0A8C0SZY5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0T148 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3Q3S9 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:43868 ENTREZGENE