KLRK1 (killer cell lectin like receptor K1) - Rat Genome Database

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Gene: KLRK1 (killer cell lectin like receptor K1) Canis lupus familiaris
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Symbol: KLRK1
Name: killer cell lectin like receptor K1
RGD ID: 12304399
Description: ENCODES a protein that exhibits kinase binding (ortholog); INVOLVED IN cellular response to lipopolysaccharide (ortholog); defense response to Gram-positive bacterium (ortholog); natural killer cell activation (ortholog); ASSOCIATED WITH Adenoviridae Infections (ortholog); AIDS-Related Complex (ortholog); anogenital venereal wart (ortholog); FOUND IN cell surface (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: NKG2-D type II integral membrane protein
RGD Orthologs
Human
Mouse
Rat
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12735,634,938 - 35,658,978 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2735,639,280 - 35,658,882 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2710,971,898 - 10,995,916 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02735,980,734 - 36,004,766 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2735,980,514 - 36,004,659 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12735,862,915 - 35,886,819 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02735,891,407 - 35,915,433 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02710,500,576 - 10,524,567 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
KLRK1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12735,634,938 - 35,658,978 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2735,639,280 - 35,658,882 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2710,971,898 - 10,995,916 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02735,980,734 - 36,004,766 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2735,980,514 - 36,004,659 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12735,862,915 - 35,886,819 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02735,891,407 - 35,915,433 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02710,500,576 - 10,524,567 (-)NCBIUU_Cfam_GSD_1.0
KLRK1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381210,372,353 - 10,390,041 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1210,372,353 - 10,391,874 (-)EnsemblGRCh38hg38GRCh38
GRCh371210,524,952 - 10,542,640 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361210,416,219 - 10,451,632 (-)NCBINCBI36Build 36hg18NCBI36
Build 341210,416,219 - 10,451,632NCBI
Celera1215,686,800 - 15,704,498 (-)NCBICelera
Cytogenetic Map12p13.2NCBI
HuRef1210,267,379 - 10,285,074 (-)NCBIHuRef
CHM1_11210,494,385 - 10,512,080 (-)NCBICHM1_1
T2T-CHM13v2.01210,259,174 - 10,276,858 (-)NCBIT2T-CHM13v2.0
Klrk1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396129,587,286 - 129,600,863 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6129,587,286 - 129,600,827 (-)EnsemblGRCm39 Ensembl
GRCm386129,610,323 - 129,623,903 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6129,610,323 - 129,623,864 (-)EnsemblGRCm38mm10GRCm38
MGSCv376129,560,339 - 129,573,859 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366129,560,174 - 129,588,327 (-)NCBIMGSCv36mm8
Celera6131,334,935 - 131,348,842 (-)NCBICelera
Cytogenetic Map6F3NCBI
cM Map663.44NCBI
Klrk1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84164,767,377 - 164,778,453 (-)NCBIGRCr8
mRatBN7.24163,079,887 - 163,092,434 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4163,081,927 - 163,092,459 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4169,316,732 - 169,327,172 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04165,099,689 - 165,110,129 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04163,733,737 - 163,744,177 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04163,392,652 - 163,403,735 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4163,393,217 - 163,403,653 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04212,035,683 - 212,046,724 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44166,914,786 - 166,922,659 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14167,159,723 - 167,167,595 (-)NCBI
Celera4151,761,022 - 151,771,458 (-)NCBICelera
RH 3.4 Map41013.4RGD
Cytogenetic Map4q42NCBI
KLRK1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl561,647,043 - 61,656,192 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1561,646,691 - 61,655,386 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2564,370,029 - 64,378,332 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap5q25NCBI

Variants

.
Variants in KLRK1
423 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_014108273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014108275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038439017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038439018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038439019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038459811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038513675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038513676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038513677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038576779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038576780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038576781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038641498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038641499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038641500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00000039858   ⟹   ENSCAFP00000035771
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2735,639,280 - 35,658,882 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845046343   ⟹   ENSCAFP00845036392
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2735,980,514 - 36,004,659 (+)Ensembl
RefSeq Acc Id: XM_014108273   ⟹   XP_013963748
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12735,634,938 - 35,658,978 (+)NCBI
Dog10K_Boxer_Tasha2710,971,898 - 10,995,916 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014108275   ⟹   XP_013963750
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12735,634,938 - 35,658,977 (+)NCBI
Dog10K_Boxer_Tasha2710,971,899 - 10,995,915 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038439017   ⟹   XP_038294945
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02735,980,734 - 36,004,766 (+)NCBI
RefSeq Acc Id: XM_038439018   ⟹   XP_038294946
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02735,984,936 - 36,004,766 (+)NCBI
RefSeq Acc Id: XM_038439019   ⟹   XP_038294947
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02735,980,735 - 36,004,765 (+)NCBI
RefSeq Acc Id: XM_038459811   ⟹   XP_038315739
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2710,971,898 - 10,991,714 (-)NCBI
RefSeq Acc Id: XM_038513675   ⟹   XP_038369603
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12735,862,915 - 35,886,819 (+)NCBI
RefSeq Acc Id: XM_038513676   ⟹   XP_038369604
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12735,867,116 - 35,886,819 (+)NCBI
RefSeq Acc Id: XM_038513677   ⟹   XP_038369605
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12735,862,916 - 35,886,819 (+)NCBI
RefSeq Acc Id: XM_038576779   ⟹   XP_038432707
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02710,500,576 - 10,524,567 (-)NCBI
RefSeq Acc Id: XM_038576780   ⟹   XP_038432708
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02710,500,576 - 10,520,159 (-)NCBI
RefSeq Acc Id: XM_038576781   ⟹   XP_038432709
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02710,500,576 - 10,524,566 (-)NCBI
RefSeq Acc Id: XM_038641498   ⟹   XP_038497426
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02735,891,407 - 35,915,433 (+)NCBI
RefSeq Acc Id: XM_038641499   ⟹   XP_038497427
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02735,895,609 - 35,915,433 (+)NCBI
RefSeq Acc Id: XM_038641500   ⟹   XP_038497428
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02735,891,408 - 35,915,432 (+)NCBI
RefSeq Acc Id: XP_013963748   ⟸   XM_014108273
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013963750   ⟸   XM_014108275
- Peptide Label: isoform X2
- UniProtKB: A0A8C0NXD8 (UniProtKB/TrEMBL),   A0A8I3PNL2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000035771   ⟸   ENSCAFT00000039858
RefSeq Acc Id: XP_038369603   ⟸   XM_038513675
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038369605   ⟸   XM_038513677
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038369604   ⟸   XM_038513676
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038497426   ⟸   XM_038641498
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038497428   ⟸   XM_038641500
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038497427   ⟸   XM_038641499
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038294945   ⟸   XM_038439017
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038294947   ⟸   XM_038439019
- Peptide Label: isoform X2
- UniProtKB: A0A8C0NXD8 (UniProtKB/TrEMBL),   A0A8I3PNL2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038294946   ⟸   XM_038439018
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038315739   ⟸   XM_038459811
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038432707   ⟸   XM_038576779
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038432709   ⟸   XM_038576781
- Peptide Label: isoform X2
- UniProtKB: A0A8C0NXD8 (UniProtKB/TrEMBL),   A0A8I3PNL2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038432708   ⟸   XM_038576780
- Peptide Label: isoform X1
Ensembl Acc Id: ENSCAFP00845036392   ⟸   ENSCAFT00845046343
Protein Domains
C-type lectin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000025596 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030019258 UniProtKB/TrEMBL
  ENSCAFG00040012655 UniProtKB/TrEMBL
  ENSCAFG00845026278 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000039858.4 UniProtKB/TrEMBL
  ENSCAFT00030035402.1 UniProtKB/TrEMBL
  ENSCAFT00040023324.1 UniProtKB/TrEMBL
  ENSCAFT00845046343 ENTREZGENE
  ENSCAFT00845046343.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.100.10 UniProtKB/TrEMBL
InterPro C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin-like/link_sf UniProtKB/TrEMBL
  CTDL_fold UniProtKB/TrEMBL
  NKG2D UniProtKB/TrEMBL
  NKR-like_CTLD UniProtKB/TrEMBL
NCBI Gene KLRK1 ENTREZGENE
PANTHER NKG2-D TYPE II INTEGRAL MEMBRANE PROTEIN UniProtKB/TrEMBL
  PTHR47494 UniProtKB/TrEMBL
Pfam Lectin_C UniProtKB/TrEMBL
PROSITE C_TYPE_LECTIN_2 UniProtKB/TrEMBL
SMART CLECT UniProtKB/TrEMBL
Superfamily-SCOP SSF56436 UniProtKB/TrEMBL
UniProt A0A8C0NXD8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PNL2 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:54966 ENTREZGENE