UCKL1 (uridine-cytidine kinase 1 like 1) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: UCKL1 (uridine-cytidine kinase 1 like 1) Canis lupus familiaris
Analyze
Symbol: UCKL1
Name: uridine-cytidine kinase 1 like 1
RGD ID: 12303010
Description: ENCODES a protein that exhibits ATP binding (inferred); uridine kinase activity (inferred); INVOLVED IN CTP salvage (inferred); nucleoside metabolic process (inferred); phosphorylation (inferred); PARTICIPATES IN beta-ureidopropionase deficiency pathway; dihydropyrimidinase deficiency pathway; mitochondrial neurogastrointestinal encephalopathy syndrome pathway
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOW QUALITY PROTEIN: uridine-cytidine kinase-like 1; uridine-cytidine kinase-like 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2447,412,521 - 47,432,860 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12447,412,520 - 47,423,222 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA)

Molecular Function

References

Genomics

Comparative Map Data
UCKL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2447,412,521 - 47,432,860 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12447,412,520 - 47,423,222 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
UCKL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2063,939,829 - 63,956,416 (-)EnsemblGRCh38hg38GRCh38
GRCh382063,939,829 - 63,956,447 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372062,571,182 - 62,587,769 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh372062,571,182 - 62,587,800 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362062,041,630 - 62,058,212 (-)NCBINCBI36hg18NCBI36
Build 342062,041,634 - 62,058,212NCBI
Celera2059,255,043 - 59,274,434 (-)NCBI
Cytogenetic Map20q13.33NCBI
HuRef2059,304,567 - 59,323,105 (-)NCBIHuRef
CHM1_12062,471,794 - 62,488,226 (-)NCBICHM1_1
Uckl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392181,210,942 - 181,223,820 (-)NCBIGRCm39mm39
GRCm382181,569,149 - 181,582,027 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2181,569,149 - 181,584,892 (-)EnsemblGRCm38mm10GRCm38
MGSCv372181,303,857 - 181,316,678 (-)NCBIGRCm37mm9NCBIm37
MGSCv362181,498,559 - 181,511,380 (-)NCBImm8
Celera2185,650,746 - 185,663,572 (-)NCBICelera
Cytogenetic Map2H4NCBI
Uckl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23168,674,849 - 168,687,513 (-)NCBI
Rnor_6.0 Ensembl3177,066,014 - 177,078,594 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.03177,066,022 - 177,078,611 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03180,775,487 - 180,788,073 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43170,707,803 - 170,720,880 (-)NCBIRGSC3.4rn4RGSC3.4
Celera3163,900,156 - 163,912,730 (+)NCBICelera
Cytogenetic Map3q43NCBI
Uckl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955528297,952 - 311,306 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955528297,952 - 311,306 (+)NCBIChiLan1.0ChiLan1.0
UCKL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12061,860,084 - 61,876,202 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2061,860,084 - 61,876,194 (-)Ensemblpanpan1.1panPan2
Uckl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493651411,144,641 - 11,156,470 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UCKL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1762,785,419 - 62,807,552 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11762,785,419 - 62,796,396 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
UCKL1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12282,267 - 299,148 (+)NCBI
ChlSab1.1 Ensembl2282,365 - 299,099 (+)Ensembl
Uckl1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474129,568,980 - 29,581,923 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 16 1 5 12 10 2
Low 5 5 6 6 5 6 1 6 8 4
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_014107216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014107217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038434435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038434436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038434437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038434438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038434439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038434440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038434441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038434442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038434443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038434444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038457898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038457899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038457901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038457902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038457903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038457904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038457905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038509552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038572928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038572929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038572930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038572931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038572932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038572933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038572934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038637193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038637194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038637195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038637196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038637197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038637198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038637199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038637200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038637201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038637202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_850293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005635316   ⟹   XP_005635373
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12447,412,520 - 47,422,223 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014107214   ⟹   XP_013962689
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12447,412,520 - 47,422,227 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014107215   ⟹   XP_013962690
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12447,412,520 - 47,422,227 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014107216   ⟹   XP_013962691
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12447,412,520 - 47,423,222 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014107217   ⟹   XP_013962692
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12447,412,520 - 47,422,223 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022409083   ⟹   XP_022264791
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12447,412,520 - 47,421,433 (-)NCBI
Sequence:
RefSeq Acc Id: XM_850293   ⟹   XP_855386
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12447,412,520 - 47,422,222 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013962691 (Get FASTA)   NCBI Sequence Viewer  
  XP_013962692 (Get FASTA)   NCBI Sequence Viewer  
  XP_038290363 (Get FASTA)   NCBI Sequence Viewer  
  XP_038290364 (Get FASTA)   NCBI Sequence Viewer  
  XP_038290365 (Get FASTA)   NCBI Sequence Viewer  
  XP_038290366 (Get FASTA)   NCBI Sequence Viewer  
  XP_038290367 (Get FASTA)   NCBI Sequence Viewer  
  XP_038290368 (Get FASTA)   NCBI Sequence Viewer  
  XP_038290369 (Get FASTA)   NCBI Sequence Viewer  
  XP_038290370 (Get FASTA)   NCBI Sequence Viewer  
  XP_038290371 (Get FASTA)   NCBI Sequence Viewer  
  XP_038290372 (Get FASTA)   NCBI Sequence Viewer  
  XP_038313826 (Get FASTA)   NCBI Sequence Viewer  
  XP_038313827 (Get FASTA)   NCBI Sequence Viewer  
  XP_038313829 (Get FASTA)   NCBI Sequence Viewer  
  XP_038313830 (Get FASTA)   NCBI Sequence Viewer  
  XP_038313831 (Get FASTA)   NCBI Sequence Viewer  
  XP_038313832 (Get FASTA)   NCBI Sequence Viewer  
  XP_038313833 (Get FASTA)   NCBI Sequence Viewer  
  XP_038365480 (Get FASTA)   NCBI Sequence Viewer  
  XP_038428856 (Get FASTA)   NCBI Sequence Viewer  
  XP_038428857 (Get FASTA)   NCBI Sequence Viewer  
  XP_038428858 (Get FASTA)   NCBI Sequence Viewer  
  XP_038428859 (Get FASTA)   NCBI Sequence Viewer  
  XP_038428860 (Get FASTA)   NCBI Sequence Viewer  
  XP_038428861 (Get FASTA)   NCBI Sequence Viewer  
  XP_038428862 (Get FASTA)   NCBI Sequence Viewer  
  XP_038493121 (Get FASTA)   NCBI Sequence Viewer  
  XP_038493122 (Get FASTA)   NCBI Sequence Viewer  
  XP_038493123 (Get FASTA)   NCBI Sequence Viewer  
  XP_038493124 (Get FASTA)   NCBI Sequence Viewer  
  XP_038493125 (Get FASTA)   NCBI Sequence Viewer  
  XP_038493126 (Get FASTA)   NCBI Sequence Viewer  
  XP_038493127 (Get FASTA)   NCBI Sequence Viewer  
  XP_038493128 (Get FASTA)   NCBI Sequence Viewer  
  XP_038493129 (Get FASTA)   NCBI Sequence Viewer  
  XP_038493130 (Get FASTA)   NCBI Sequence Viewer  
  XP_855386 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013962691   ⟸   XM_014107216
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013962692   ⟸   XM_014107217
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_855386   ⟸   XM_850293
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_013962689   ⟸   XM_014107214
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013962690   ⟸   XM_014107215
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005635373   ⟸   XM_005635316
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_022264791   ⟸   XM_022409083
- Peptide Label: isoform X7
- Sequence:
Protein Domains
C2H2-type   PRK

Promoters
RGD ID:13687690
Promoter ID:EPDNEW_C5759
Type:initiation region
Name:UCKL1_1
Description:uridine-cytidine kinase 1 like 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12447,423,495 - 47,423,555EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000013120 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000019316 ENTREZGENE, UniProtKB/TrEMBL
  ENSCAFP00000019341 UniProtKB/TrEMBL
  ENSCAFP00000048307 UniProtKB/TrEMBL
  ENSCAFP00000049745 UniProtKB/TrEMBL
  ENSCAFP00000062792 ENTREZGENE, UniProtKB/TrEMBL
  ENSCAFP00000064694 UniProtKB/TrEMBL
  ENSCAFP00000064773 UniProtKB/TrEMBL
  ENSCAFP00000065720 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000020804 UniProtKB/TrEMBL
  ENSCAFT00000020832 UniProtKB/TrEMBL
  ENSCAFT00000065222 UniProtKB/TrEMBL
  ENSCAFT00000077367 UniProtKB/TrEMBL
  ENSCAFT00000077652 UniProtKB/TrEMBL
  ENSCAFT00000084827 UniProtKB/TrEMBL
  ENSCAFT00000091797 UniProtKB/TrEMBL
  ENSCAFT00000092118 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.2020 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  PRibTrfase_dom UniProtKB/TrEMBL
  PRK/URK UniProtKB/TrEMBL
  PRTase-like UniProtKB/TrEMBL
  UCKL1 UniProtKB/TrEMBL
  Uridine_kinase-like UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene UCKL1 ENTREZGENE
PANTHER PTHR10285:SF68 UniProtKB/TrEMBL
Pfam PRK UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
  SSF53271 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
TIGRFAMs udk UniProtKB/TrEMBL
UniProt A0A5F4C5Q5_CANLF UniProtKB/TrEMBL
  A0A5F4C8G8_CANLF UniProtKB/TrEMBL
  A0A5F4DD68_CANLF UniProtKB/TrEMBL
  A0A5F4DD85_CANLF UniProtKB/TrEMBL
  A0A5F4DIR7_CANLF UniProtKB/TrEMBL
  A0A5F4DIU7_CANLF UniProtKB/TrEMBL
  E2REI3_CANLF UniProtKB/TrEMBL
  F1P819_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:48106 ENTREZGENE