AGPS (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
CanFam3.1 | 36 | 21,131,616 - 21,264,615 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 36 | 21,131,641 - 21,329,467 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 36 | 21,149,863 - 21,284,172 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 36 | 21,274,757 - 21,409,268 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 36 | 21,276,105 - 21,474,081 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 36 | 21,345,042 - 21,479,391 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 36 | 21,346,803 - 21,481,415 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 36 | 21,462,141 - 21,596,527 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
|
AGPS (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCh38 | 2 | 177,392,773 - 177,543,834 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 2 | 177,392,746 - 177,567,024 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 2 | 178,257,501 - 178,408,562 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 2 | 177,965,731 - 178,112,411 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 2 | 178,083,009 - 178,228,512 | NCBI | | | | | Celera | 2 | 171,860,003 - 172,011,409 (+) | NCBI | | Celera | | | Cytogenetic Map | 2 | q31.2 | NCBI | | | | | HuRef | 2 | 170,128,203 - 170,279,631 (+) | NCBI | | HuRef | | | CHM1_1 | 2 | 178,262,812 - 178,413,489 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 2 | 177,875,047 - 178,026,109 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Agps (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCm39 | 2 | 75,662,477 - 75,761,694 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 2 | 75,662,521 - 75,761,694 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 2 | 75,832,177 - 75,931,350 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 2 | 75,832,177 - 75,931,350 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 2 | 75,670,234 - 75,769,407 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 2 | 75,633,031 - 75,730,489 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 2 | 77,493,849 - 77,593,052 (+) | NCBI | | Celera | | | Cytogenetic Map | 2 | C3 | NCBI | | | | | cM Map | 2 | 44.77 | NCBI | | | | |
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Agps (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCr8 | 3 | 81,154,599 - 81,253,099 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 3 | 60,747,323 - 60,845,831 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 3 | 60,747,323 - 60,845,830 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 3 | 64,120,994 - 64,219,055 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 3 | 72,704,658 - 72,802,714 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 3 | 70,471,616 - 70,569,962 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 3 | 62,648,352 - 62,749,250 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 3 | 62,648,447 - 62,749,153 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 3 | 69,193,349 - 69,296,169 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.1 | 3 | 58,425,040 - 58,444,100 (+) | NCBI | | | | | Celera | 3 | 60,248,210 - 60,345,456 (+) | NCBI | | Celera | | | Cytogenetic Map | 3 | q23 | NCBI | | | | |
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Agps (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChiLan1.0 Ensembl | NW_004955403 | 19,257,501 - 19,381,901 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955403 | 19,253,784 - 19,381,883 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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AGPS (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
NHGRI_mPanPan1-v2 | 13 | 80,058,687 - 80,208,144 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 2B | 80,073,679 - 80,223,118 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 2B | 64,671,136 - 64,823,956 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 2B | 182,375,149 - 182,526,192 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 2B | 182,375,149 - 182,520,557 (+) | Ensembl | panpan1.1 | | panPan2 | |
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Agps (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
HiC_Itri_2 | NW_024405303 | 138,188,897 - 138,319,862 (+) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936509 | 6,742,673 - 6,868,401 (+) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936509 | 6,742,800 - 6,872,045 (+) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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AGPS (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
Sscrofa11.1 Ensembl | 15 | 83,146,002 - 83,391,984 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 15 | 83,146,063 - 83,285,905 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 15 | 92,609,561 - 92,727,304 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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AGPS (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChlSab1.1 | 10 | 62,943,914 - 63,101,644 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 10 | 62,946,695 - 63,096,044 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666040 | 136,479,515 - 136,640,249 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Agps (Heterocephalus glaber - naked mole-rat) |
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