SH2D4B (SH2 domain containing 4B) - Rat Genome Database

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Gene: SH2D4B (SH2 domain containing 4B) Canis lupus familiaris
Analyze
Symbol: SH2D4B
Name: SH2 domain containing 4B
RGD ID: 12299726
Description: ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SH2 domain-containing protein 4B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1429,651,821 - 29,736,464 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl429,651,821 - 29,734,411 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha429,777,081 - 29,861,671 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0429,954,809 - 30,039,902 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl429,954,809 - 30,038,871 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1429,824,339 - 29,909,130 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0430,026,724 - 30,110,379 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0430,381,180 - 30,464,984 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SH2D4B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1429,651,821 - 29,736,464 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl429,651,821 - 29,734,411 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha429,777,081 - 29,861,671 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0429,954,809 - 30,039,902 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl429,954,809 - 30,038,871 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1429,824,339 - 29,909,130 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0430,026,724 - 30,110,379 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0430,381,180 - 30,464,984 (+)NCBIUU_Cfam_GSD_1.0
SH2D4B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381080,537,902 - 80,646,560 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1080,537,902 - 80,646,560 (+)EnsemblGRCh38hg38GRCh38
GRCh371082,297,658 - 82,406,316 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361082,287,638 - 82,396,296 (+)NCBINCBI36Build 36hg18NCBI36
Celera1076,287,936 - 76,398,071 (+)NCBICelera
Cytogenetic Map10q23.1NCBI
HuRef1076,140,484 - 76,250,465 (+)NCBIHuRef
CHM1_11082,580,831 - 82,689,817 (+)NCBICHM1_1
T2T-CHM13v2.01081,405,201 - 81,518,620 (+)NCBIT2T-CHM13v2.0
Sh2d4b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391440,533,478 - 40,624,294 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1440,535,746 - 40,615,223 (-)EnsemblGRCm39 Ensembl
GRCm381440,811,521 - 40,902,337 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1440,813,789 - 40,893,266 (-)EnsemblGRCm38mm10GRCm38
MGSCv371441,629,157 - 41,706,254 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361439,724,581 - 39,801,678 (-)NCBIMGSCv36mm8
Celera1436,982,288 - 37,052,263 (-)NCBICelera
Cytogenetic Map14BNCBI
cM Map1422.36NCBI
Sh2d4b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81616,708,641 - 16,817,266 (-)NCBIGRCr8
mRatBN7.21616,673,518 - 16,783,076 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1616,677,889 - 16,769,087 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1616,740,226 - 16,837,532 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01617,866,970 - 17,964,280 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01616,793,124 - 16,890,423 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01617,611,115 - 17,708,387 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1617,611,115 - 17,708,387 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01617,493,970 - 17,588,425 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41617,233,702 - 17,325,791 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11617,233,699 - 17,341,302 (-)NCBI
Celera1616,906,283 - 16,995,410 (-)NCBICelera
Cytogenetic Map16p14NCBI
Sh2d4b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955510506,117 - 599,716 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955510506,117 - 602,140 (+)NCBIChiLan1.0ChiLan1.0
SH2D4B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2892,500,716 - 92,608,412 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11092,506,033 - 92,613,733 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01076,934,403 - 77,043,103 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11080,535,435 - 80,643,349 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1080,535,435 - 80,643,349 (+)Ensemblpanpan1.1panPan2
Sh2d4b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721350,967,538 - 51,052,015 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936716359,297 - 442,616 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936716359,211 - 442,998 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SH2D4B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1482,379,176 - 82,467,221 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11482,378,044 - 82,467,236 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21488,986,051 - 89,075,033 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SH2D4B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1951,193,535 - 51,302,073 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl951,196,002 - 51,301,643 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604811,514,436 - 11,634,037 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sh2d4b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248416,490,811 - 6,588,453 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248416,487,257 - 6,560,654 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SH2D4B
1778 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 4
Low 4
Below cutoff 2 12 1 3 1 6 1 8 7 6

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_038473420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038473421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038492792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038534489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038534490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038663087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038663088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_536404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005324254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000025151   ⟹   ENSCAFP00000023347
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl429,651,821 - 29,734,411 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000090349   ⟹   ENSCAFP00000064843
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl429,651,821 - 29,734,010 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845027918   ⟹   ENSCAFP00845021974
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl429,954,809 - 30,038,871 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845027943   ⟹   ENSCAFP00845021996
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl429,954,809 - 30,038,470 (+)Ensembl
RefSeq Acc Id: XM_038473420   ⟹   XP_038329348
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1429,824,339 - 29,909,130 (+)NCBI
RefSeq Acc Id: XM_038473421   ⟹   XP_038329349
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1429,824,339 - 29,909,130 (+)NCBI
RefSeq Acc Id: XM_038492792   ⟹   XP_038348720
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha429,777,081 - 29,861,671 (+)NCBI
RefSeq Acc Id: XM_038534489   ⟹   XP_038390417
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0430,381,180 - 30,464,984 (+)NCBI
RefSeq Acc Id: XM_038534490   ⟹   XP_038390418
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0430,381,180 - 30,464,984 (+)NCBI
RefSeq Acc Id: XM_038598815   ⟹   XP_038454743
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0430,026,724 - 30,110,379 (+)NCBI
RefSeq Acc Id: XM_038598816   ⟹   XP_038454744
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0430,026,724 - 30,110,379 (+)NCBI
RefSeq Acc Id: XM_038663087   ⟹   XP_038519015
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0429,954,809 - 30,039,902 (+)NCBI
RefSeq Acc Id: XM_038663088   ⟹   XP_038519016
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0429,954,809 - 30,039,902 (+)NCBI
RefSeq Acc Id: XM_536404   ⟹   XP_536404
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1429,651,821 - 29,736,464 (+)NCBI
Dog10K_Boxer_Tasha429,777,081 - 29,861,671 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005324254
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1429,878,347 - 29,883,371 (+)NCBI
RefSeq Acc Id: XP_536404   ⟸   XM_536404
- Peptide Label: isoform X2
- UniProtKB: A0A8P0PDH2 (UniProtKB/TrEMBL),   A0A8C0TXS2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000023347   ⟸   ENSCAFT00000025151
RefSeq Acc Id: ENSCAFP00000064843   ⟸   ENSCAFT00000090349
RefSeq Acc Id: XP_038329348   ⟸   XM_038473420
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038329349   ⟸   XM_038473421
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038454743   ⟸   XM_038598815
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038454744   ⟸   XM_038598816
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038519015   ⟸   XM_038663087
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LW49 (UniProtKB/TrEMBL),   A0A8I3NNA8 (UniProtKB/TrEMBL),   A0A8C0KN40 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038519016   ⟸   XM_038663088
- Peptide Label: isoform X2
- UniProtKB: A0A8I3NST0 (UniProtKB/TrEMBL),   A0A8C0TXS2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038348720   ⟸   XM_038492792
- Peptide Label: isoform X1
- UniProtKB: A0A8P0NHD3 (UniProtKB/TrEMBL),   A0A8C0KN40 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038390417   ⟸   XM_038534489
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KN40 (UniProtKB/TrEMBL),   A0A8C0LW49 (UniProtKB/TrEMBL),   A0A8I3NNA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038390418   ⟸   XM_038534490
- Peptide Label: isoform X2
- UniProtKB: A0A8C0TXS2 (UniProtKB/TrEMBL),   A0A8I3NST0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845021996   ⟸   ENSCAFT00845027943
RefSeq Acc Id: ENSCAFP00845021974   ⟸   ENSCAFT00845027918
Protein Domains
SH2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000015877 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030001573 UniProtKB/TrEMBL
  ENSCAFG00040025358 UniProtKB/TrEMBL
  ENSCAFG00845015623 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000025151.5 UniProtKB/TrEMBL
  ENSCAFT00000090349.2 UniProtKB/TrEMBL
  ENSCAFT00030002878.1 UniProtKB/TrEMBL
  ENSCAFT00030002884.1 UniProtKB/TrEMBL
  ENSCAFT00040047307.1 UniProtKB/TrEMBL
  ENSCAFT00845027918 ENTREZGENE
  ENSCAFT00845027918.1 UniProtKB/TrEMBL
  ENSCAFT00845027943 ENTREZGENE
  ENSCAFT00845027943.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.505.10 UniProtKB/TrEMBL
InterPro SH2 UniProtKB/TrEMBL
  SH2_dom_sf UniProtKB/TrEMBL
  SH2D4B_SH2 UniProtKB/TrEMBL
NCBI Gene SH2D4B ENTREZGENE
PANTHER SH2 DOMAIN-CONTAINING PROTEIN 4B UniProtKB/TrEMBL
  T CELL-SPECIFIC ADAPTER PROTEIN TSAD UniProtKB/TrEMBL
Pfam SH2 UniProtKB/TrEMBL
PRINTS SH2DOMAIN UniProtKB/TrEMBL
PROSITE SH2 UniProtKB/TrEMBL
SMART SH2 UniProtKB/TrEMBL
Superfamily-SCOP SSF55550 UniProtKB/TrEMBL
UniProt A0A8C0KN40 ENTREZGENE
  A0A8C0LW49 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0LZ97_CANLF UniProtKB/TrEMBL
  A0A8C0TXS2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NNA8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NST0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NHD3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0PDH2 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:46115 ENTREZGENE